zgc:101566 (LOC106573100)


Basic Information

Item Value
gene id zgc:101566
gene name LOC106573100
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 51041431 ~ 51144745 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036979564.1
atactgtatttgTATTACTGATACACAGTTACTTGGGATTGTTAATTGGATTCGTTTTAACGTTTCTTGACTTCGTGTTTGTAGTTTTGGATTATTTGTGCactttgacattttactgcactgttagaagGTAGTAAGATAAGCATTTCGCCGTTATAACATttgctaaactgtgtacgcgacaagtaaactttgatttgatttaataatgGACCATTGTGCTGCTCGTTGAATTATTTGATTCGATGCTACCCCCTTGCGACTGAAAATCATCACAAGTTAAAGAAGAAGAATTCTGTAAACATCCCAAACGTCACTTCCGGTTATTATTTTGACAGCAAAACACTGCAACATTTTGCAATACTAATCTCTGGTCCccattaaattgtattttttattttaacacCTTTTGTGTTTTTTGCGTCACATTTATTAGCTCATTTTACTTGTGTGGTGGAATTGGCAATATTCGGAAAGAGATCAGTATTCTGCTTCTAGCTAGCGGAAGATGAAGGTCCCGAGCGATGAAAATGAGGTGGTGGAGGAAGGCAGTAGCAGTTCAACACCAGTAGACAACTCCGACAACGAGGAAATTCCACCTTATCTACGCGAAGAACCTCCTGAAGACGGCGAGAAGGACCACCCTAAGACCGAGGCGGGGGTCATCTGGAGGGTGACCGGCGGTCTCTTCAACATGACCAGAGGGGCGGTCGGCGCGACATGGGGAGGCGTGGCCTGGGTGGGCTGTAAGAGCTATGACATCACCAAGACGGTGGTGACCAGCGTGCCGGCCGCCGGCGTGGGATTAGTCAAAGGGGGCGTTTCCGTGGTGACGGGAGGAGTTGGAGCAGTAGGGTCCGCAGTAGCCAGTAAAGTGACACCAAAGAAAAAGGATAAGTCGGATTAGGCCTAGACCCAACTACCACCCCAATCTATGCGTCCTTCATTATCTGTCTGCTGTGCATAGGATCCATCTGGTTACTGATGGTAACGATTCAGAGTTGAGATAAGCCCAAGTACCTTGGATTTCCACGTAAATCATTCAACGACATCAATGGGGAAACTTGCGTGAAAAGCCGAGTTAAGCTTGCGGATCTCAAGTCAGAATACTACCCTGAGGCAGCCATTACAGAGGGAATTTTATGGGATTTGTGACGATATAGGAAGGTTGAACTTACTGCCGATGTACTTCTGAGAGGGATCTCATGTTTTTGTGATTGACCTGGGTGTGGGAAGGGCATAATAATATGACGACCACGCACAATGTTTGTCATGCGTAAGAACAATTTGGTAGCGATTCAGCAAGGACACGTCTACACATTTCTCAAAGACTGGAGTTGATTTAAATTCTTCCAGTTGTATTATCTTTACGTTAGTATGAAAACAAAGTGAAAGGTACTTTTTACACAACTTAATTTCACCAGTTTGACATCGGTGATTGGAGAACACACACCAAAAACGACGTGTGTATGTGAAGATGTACAGAGTGCGTATTATAATAGATATGTGAATAAAAGGTACGTGGATCCTATTGATGCAGATAGAGAAGGTAGGAGAGGGACTTTGCAGTCTTGAAACTCCATTGCAActtggatttttttattttattgtacaACAGGTgaggggatttttttattttttttgagttGGAGACCTGTTAAATAAAGCGTGTTATTGCATAGAAACGGATCTAAAAAAATCCTGAAAGACACCTTTTTGTATACATGTTACTTATATCAGCAGAGGTCCTGGGGTGTTTAAAGAAATTAAGCACCATTTCACCACCAACACACGTACGTAAGGTCAAGGGTCATAGTTCATGCCTGCATggcaaatgtcaccctattccctttatagtgcattactttttaccagggccctcttgtttaaaagtagtgcgctatatagggaatagggtgccatgtgggactcATCCTATGTCATTCACTTGTATGGACTTTCCTCAAATCTATATATATGTGCCTACCTGTACAATGTAGATACATTAGATAGATAAGTACGGACATTCCCGGAGTATGAGGGCCAGTTGAAAACTAACCTGCTTTTTCTTTCCACGAATCCCACTTCTGGGTGCCAATATGTTTGGCATGAAAATGAGTTGACAAGATGCCAGAAACAGATCTGGGTACAGGCTAATTCATTTCCACATGGTTTACATTGTTACCATAGTGCTGAATTACTGTCCATTCTGATGAGACATTAGGTGTAcacttttttttgtatttcaatatTCACTAGAAAGAGAACACTCTTGGCATGGTATTTCCACGCCCTTACGTTAAGCATTGCATGCTTCAAGTAGTCGTTTTTCCCTTCTCCCTGTTTATTATTATGACAAGTCTTGCCTATTTCATTTGATGCTTTTTCCTCTTGTCCTGTCTATTTACTGTTTTCCTCATCTCTTACTTCTGCTAGTTAATATATGTATTGGGGACTCTGTTACTATCACCCGAtgtgtgttccaaatgacaccctgttccctatttagtgcagcacttttgaccagggcccataggggctttggtcaaaagtagtgcactatgtagggaatagggtgcaatttgggacgcatacCTGGACCTTTAAGACCAAGTAGATTTTTCTCTATGATAGAACTATTTTTGCAAAAACTGATGCTGTATTCTATAAATAAAACTACTCTGTATTTGAA
>TU62335
GGTTATTATTTTGACAGCAAAACACTGCAACATTTTGCAATACTAATCTCTGGTCCccattaaattgtattttttattttaacacCTTTTGTGTTTTTTGCGTCACATTTATTAGCTCATTTTACTTGTGTGGTGGAATTGGCAATATTCGGAAAGAGATCAGTATTCTGCTTCTAGCTAGCGGAAGATGAAGGTCCCGAGCGATGAAAATGAGGTGGTGGAGGAAGGCAGTAGCAGTTCAACACCAGTAGACAACTCCGACAACGAGGAAATTCCACCTTATCTACGCGAAGAACCTCCTGAAGgacctatagtATACCAggaagtgtcagaggaaggcctggaaaattgtcaaagacccgaGCCAACCcaaccatagactgttcactctcctaccgcatggcaagagataccggagtgccaaatctgggaccaaaaggcacctaaacagCTTTTACTCCCAAgtcataagactactgaacagttaatcaaatggctactatTGCATTTACACTTTTTTGCACTGAGTCTCTTATACTGACTCTACCCATGCACTCActcatacttacactgacacttcaacacacacacacacacacacacacacacacacacacatacacacacacacactacacacactacacacacacacatattgatgTCACACACATACTTTCACTCTAtccatatgctgctgctactctgttctattGTCTATCCTTATTGCCTAGTCACTGTTACCCCTATCTACAAGTACATTCTActtcaactacctcgtacccctgcacattgcctCAGTACCGGT

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036979564.1 False 2692 mRNA 0.41 3 51092525 51144745
TU62335 True 808 lncRNA 0.43 3 51041431 51144424

Neighbor

gene id symbol gene type direction distance location
LOC110532401 NA coding downstream 101127 50897530 ~ 50991398 (-)
mapk8ip1a LOC106573101 coding downstream 204029 50871475 ~ 50888496 (-)
LOC110532393 ckap5 coding downstream 241857 50808713 ~ 50850668 (-)
LOC110524514 borcs5 coding downstream 307486 50777716 ~ 50792069 (-)
LOC110524488 LOC106573155 coding downstream 340353 50718636 ~ 50752172 (-)
LOC110524590 ccnd1 coding upstream 334301 51479046 ~ 51491719 (-)
LOC110524599 NA coding upstream 528808 51601527 ~ 51674973 (-)
LOC110524618 LOC106573092 coding upstream 706237 51850982 ~ 51886676 (-)
LOC110524646 LOC106573087 coding upstream 847692 51992437 ~ 52100196 (-)
LOC118966705 LOC106573087 coding upstream 1047877 52192622 ~ 52197205 (-)
G55840 NA non-coding downstream 98574 50993685 ~ 50993951 (-)
G55755 NA non-coding downstream 195694 50893317 ~ 50896831 (-)
G55753 NA non-coding downstream 200697 50890424 ~ 50891828 (-)
G55665 NA non-coding downstream 240113 50852206 ~ 50852412 (-)
G55628 NA non-coding downstream 278238 50767159 ~ 50814287 (-)
G56122 NA non-coding upstream 61814 51206559 ~ 51206794 (-)
G56148 NA non-coding upstream 86978 51231723 ~ 51233441 (-)
G56270 NA non-coding upstream 108140 51252885 ~ 51253108 (-)
G56271 NA non-coding upstream 108823 51253568 ~ 51253864 (-)
G56326 LOC106573098 non-coding upstream 191899 51336644 ~ 51342245 (-)
G55627 NA other downstream 325094 50765363 ~ 50767431 (-)
G55408 NA other downstream 680397 50411634 ~ 50412128 (-)
LOC110532382 LOC106573120 other downstream 2106608 48971580 ~ 49044257 (-)
LOC110524264 LOC106573263 other downstream 2788389 48291626 ~ 48304829 (-)
G56372 NA other upstream 255982 51400727 ~ 51412569 (-)
G56764 NA other upstream 601872 51746617 ~ 51747220 (-)
G57742 NA other upstream 1351153 52495898 ~ 52496234 (-)
G58565 LOC106561659 other upstream 1994713 53139458 ~ 53140304 (-)
LOC110525078 LOC105021811 other upstream 2189979 53334724 ~ 53338484 (-)

Expression


Co-expression Network