LOC110524575 (fgf3)


Basic Information

Item Value
gene id LOC110524575
gene name fgf3
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 51449353 ~ 51451460 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021604377.2
GCGGCTTTCAGCAATGAGCCTCTgtgtgtaatgtcatgtaatttTATCCATCCATAGCCTAGCATACTGCACACACAGCTCACACAAAACGGTACCTTGCCTTGAATGATGATAATTTGATTTTTGCGCGCAACTTGGGCATTCTCTCTTGCGCGCTATATTTGTCACGAGAGGCTGTTTCAATCAAAAGTAGATGTTTGAAAAGTACCCATTTTTTCGGGGTGGATTAATCAATGGACCTAATAAGACTTCGATGGAAACTATTGATTCCGATTTTGGCACTCATGGAAAAGGACTAAAATACTATTTTCGGCCATGCCATAATGGTTATAATACTGGTTTTGTTATTGTTGAATTTGATGCATCCCAGTCACCAAAAGCCCCGTTATTCTATGACGCTTAGGACATCTACTCCACAGCATCAGAGCTTTAACCCGAGGCAGCGCAGGGATGCTGCGGGGCGTGGGGGAGTGTACGAGCACCTTGGGGGAGCACCGAGACACAGAAAGTTGTACTGTGCCACAAAGTATCACTTACAAATACATCCCAACGGGAGAATAGACGGGACCCTGGAGGAGAATAACCCTTTCAGCATATTGGAGATAGCAGCAGTGGATGTGGGAGTGGTGGTGATTAAAGGACTGTTCTCTGATAGATATCTGGCCATGAACGAAAAAGGAGGACTATATGCATCGGCTGCCTTCAACCAGGAGTGTGAGTTCATGGAGCGGATCCATGAGTTAGGCTACAACACGTACGCCTCTCGCAACTACCAgacaacccctccctccacctcaaCAGGAAGCAGCAGCAGGCGAAGGGCGAGCGCTGAGAGGCTCTGGTACGTGTCAATCAATGGAAAGGGCCGGCCAAAGCGTGGCCTGAAGACTCGCAGGACAGAGAAGGCCTCCCTCTTCCTGCCCAGGGTCCTTGGCCACAAGGACCATGACATGGTTCACCTGTTGTTCAACAGTAGTCTCGGGTACAGACAGACTGCCCTCAGACTTGCAGGAAAGACAGGGCCACGGAGACAGAGACATGTTTCCATATCCAGGCAGTTTGATGACTAGTCTGACTCATGTCATTCCACACTGCCCAAAGCCtgactacctacctacctgatGACTGAGAGATACCTGGTGACTGAGAGATACTGAGAGATACCAGGACGCCTTTCCCTCCTTTAAACTGGCATAATGATACTGTTGGAATAATGTACAACCTTATATAGAGATTGCATGCATCATACTGTCTTGTGAATAAAGTGGTCAATGTCTTGAATGTATCTTTGTACTGTTATTGTTAACTCACATTATCGGAAATACATGCAGTTAATGTCCCGTGTAATTATTCTTGAGGACCATTCCATACAAAGATGTCTGGAAGGATGCATGTGGATTACTCAATAATATGTTATACAAAAAGCACATTGGTCTAATAATTGTCCTCTGTAGCGCAGTTAGTAGCTTTTGATGCATTCAacgccaggattgtgggttcgatCCCAGCTGGGACCACCTATATG
>TU62774
AGTGTACGAGCACCTTGGGGGAGCACCGAGACACAGAAAGTTGTACTGTGCCACAAAGTATCACTTACAAATACATCCCAACGGGAGAATAGACGGGACCCTGGAGGAGAATAACCCTTTCAGCATATTGGAGATAGCAGCAGTGGATGTGGGAGTGGTGGTGATTAAAGGACTGTTCTCTGATAGATATCTGGCCATGAACGAAAAAGGAGGACTATATGCATCGGCTGCCTTCAACCAGGAGTGTGAGTTCATGGAGCGGATCCATGAGTTAGGCTACAACACGTACGCCTCTCGCAACTACCAgacaacccctccctccacctcaaCAGGAAGCAGCAGCAGGCGAAGGGCGAGCGCTGAGAGGCTCTGGTACGTGTCAATCAATGGAAAGGGCCGGCCAAAGCGTGGCCTGAAGACTCGCAGGACAGAGAAGGCCTCCCTCTTCCTGCCCAGGGTCCTTGGCCACAAGGACCATGACATGGTTCACCTGTTGTTCAACAGTAGTCTCGGGTACAGACAGACTGCCCT

Function

symbol description
fgf3 Enables fibroblast growth factor receptor binding activity. Acts upstream of with a negative effect on Wnt signaling pathway. Acts upstream of or within with a positive effect on hypothalamus development. Acts upstream of or within several processes, including animal organ development; nervous system development; and regionalization. Located in extracellular matrix and extracellular space. Is expressed in several structures, including germ ring; mesoderm; nervous system; neural rod; and pharynx. Orthologous to human FGF3 (fibroblast growth factor 3).

NR:

description
fibroblast growth factor 3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021604377.2 False 1525 mRNA 0.46 3 51449353 51451460
TU62774 True 531 TUCP 0.53 3 51449822 51450935

Neighbor

gene id symbol gene type direction distance location
LOC110524569 LOC106573096 coding upstream 25050 51358288 ~ 51424303 (+)
shank2b LOC106573098 coding upstream 107720 51214830 ~ 51342260 (+)
acte1 LOC106561611 coding upstream 279009 51164077 ~ 51170344 (+)
LOC118964319 NA coding upstream 293957 51154507 ~ 51155396 (+)
LOC110524544 LOC106573154 coding upstream 373908 51071696 ~ 51075445 (+)
LOC110524584 LOC106573153 coding downstream 3671 51455131 ~ 51458797 (+)
trnap-ugg-2 NA coding downstream 178708 51630168 ~ 51630239 (+)
trnap-agg NA coding downstream 179372 51630832 ~ 51630903 (+)
LOC110524604 LOC106573091 coding downstream 350537 51801997 ~ 51852291 (+)
LOC110524623 LOC106573089 coding downstream 436940 51888400 ~ 51894917 (+)
G56415 NA non-coding upstream 6182 51442964 ~ 51443171 (+)
G56185 NA non-coding upstream 159841 51289109 ~ 51289512 (+)
G56162 NA non-coding upstream 193709 51255351 ~ 51255644 (+)
G56156 NA non-coding upstream 203102 51245958 ~ 51246251 (+)
G56455 NA non-coding downstream 22236 51473696 ~ 51473921 (+)
G56475 NA non-coding downstream 48745 51500205 ~ 51500443 (+)
G56487 NA non-coding downstream 67275 51518735 ~ 51555869 (+)
G56507 NA non-coding downstream 97909 51549369 ~ 51565773 (+)
G56554 NA non-coding downstream 156154 51607614 ~ 51607991 (+)
LOC118964841 NA other upstream 1365357 50037523 ~ 50184257 (+)
G53181 NA other upstream 2555441 48893497 ~ 48893912 (+)
G52324 NA other upstream 3066096 48380542 ~ 48383257 (+)
G52080 NA other upstream 3424395 48006674 ~ 48024958 (+)
LOC110520864 NA other upstream 4190455 47227246 ~ 47260224 (+)
LOC118936380 LOC106581842 other downstream 2214755 53632830 ~ 53705421 (+)
G59031 NA other downstream 2536680 53988140 ~ 53988597 (+)
LOC110525327 LOC106573036 other downstream 2593389 54044813 ~ 54089850 (+)
G59963 NA other downstream 3269728 54721188 ~ 54721463 (+)
G61202 LOC106573044 other downstream 4454048 55905508 ~ 55923376 (+)

Expression


Co-expression Network