LOC110524590 (ccnd1)


Basic Information

Item Value
gene id LOC110524590
gene name ccnd1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 51479046 ~ 51491719 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036979616.1
CCATAACCAACCTACATAACAACAGTCACGTCATTTCCCCAGTGCGCGGAGGGGAGGGGAGTTTATTGAGGGAAGCTGATCAAAGTTTGGTGGCCTCCTGAGAGCTTCGACACAGCAGTCGCAGCAGACAGAGGTAAAGCAACGTCCACGGAACTTTTTGGGGGAAGCAATAGTTCAgactctctttcagtctctctcatTGCTCGAGCGACTGCCGGAATGGAACACCTGTTGCTGTGCTGTGAAGTGGAGACCATCCGGAGAGCTTACCAAGACTCGAACCTGCTCAACGACAGAGTTCTGCAGACCATGCTAAAAGCGGAAGACAATTATCTCCCCGCAACGAACTACTTCAAATGTGTACAGAAAGAGATTGTACCCTGCATGAGGAGAATTGTTGCTACGTGGATGCTGGAGGTCTGTGAGGAACAGAAATGCGAAGAGGAGGTTTTTCCCCTAGCTATGAATTTTTTAGACAGATATTTGTCTGTTGAACCCACAAAGAAGACTCGACTACAGTTATTGGGCGCTACATGCATGTTTCTGGCGTCTAAAATGAAGGAGACCATTCCTCTAACAGCTGTGAAGTTGTGCATATACACAGACAATTCCATCCGGACGGGCGAGTTGCTGCAAATGGAACTACTGGTATTGAACAAGCTGAAATGGGATCTAGCCTCAGTTACTCCGCACGATTTCATAGACCACTTCCTCTCCAAGCTACCCATCCATCAGGACACCAAGCAAATCCTGTGCAAGCATGCCCAGACCTTTGTGGCTCTCTGTGCTACAGATGTCAAATTCATTGCCAACCCTCCGTCAATGATCGCAGCGGGCAGTGTGGCGGCTGCTGTCCAGGGGCTGAATCTGAAGAGCATGGACGATGCACTGTCATCCCAGCAACTCACTGACTTCCTGTCTCAAGTCATCAGAAGTGACCCGGATTGTCTACGGGCATGTCAAGAACAGATCGAGTCCTTATTGGAGACCAGTCTCCGTCAGGCACAACAACACACTGTTTCCATTGACACCAAGAGCATGGATGAGGAGGTCGACCTGTCGTGCACGCCAACGGACGTTAGAGATGTGAACATCTGAGTTGGACAGCCTTTTCTGGTGCACACTAAGCAGAAGCCATGGATGGAGGATAGGGCTTCGGGGATAGAAGAGAACGCGCTGATTGACACTGTCTCAGCAGCACCGCTCCCACTGACTGCGCTCTCACCTACTCACACACCTGTGCTCGTAGCATAGGGTCTGGCCTGAACATCCTGTCTGGCTCCTAACAGGTGTTGTAAGGGATCAGCCCGGGCTTCATGCGTACACTTGCTCTCTGTCCCCTCACTGGTTTGAGGCAGCATCAATTGGGCATGGTTCCCATTATGTATTTTAGACGAAACAAACTTgaataacaaaaaaaagaaatgtagtGCTGTATGTACAACAGAATAGACAACTAGAGAATAATGAACTaggtatttttgttgttgtttggacAGATTGAGCACGATACACCTGCAATGTCTCACGTAAAAAAAGCTAGTCCTGAGTTGTTTGATGACATAGGCGTTTTATGGTATGGTAAACCCGTTTCTAATGGAGGGGCGTTTTTGTTGTCCCTGGTTAGTTTGGTGTGGCCATTTAACCAACTTTGAGATATTGTTTTGAAAATCAGTCTTCTAATCTCCTCTTCCTTTTTTTTATGGAGAATGTACAATGTTAATTTGTTTAGCGTACTTAAGGCCTCTATTCAATCCATATCGCGGAAGTTCATCGTTACGACAGGTTTGAAAttgaaaggcaatgttcccgcgttagcagagactgcattaaCTGTAAACTCTGCGTATGTCGGCTtaatcggaaatgacctttaccTCTTCGATCGcgcaatctgtaacgcttcagcgatACTCATTGAATAGAGCCTTTTATTCAATTGTCATCAGAGGTCTGTGGATTACCTAGGCCTCTGTCCTAACTGCTAACACACTGCTTTCCGGAGACAGCAAGCTAACCAGTGAAGTACAGCTACTTCAAAATATCTGCAGGACGTCTAGATCATATTATACTGAATGCTTGCAACATTGCATTCTGCGACAGAATAATTAGCTAGCTGTCCTGTATGTTCTCTCTATGTAAGCTAACGTAGTCCACAGTCTTTATCGAATTGTAATTCTGTCTTACTATCTAAAAACCATTCCATCAAAAAAAAGCACTTTGGGTCAATAACTCCTTACTGCCTATTTTGAGAAGAACCATATGGGACATGACGTAACATAATGGAATGGTTTGGGAACAACGTCAGCTTCTGGGATGAAGAGTGTTTCTAAACATGGTGTTATGTGGGAATGGCAGGACATATTAGAGTGTTTTGGGCAAATCTAATCTATTTGTCTAGCTAAAATACCTGGACCCCATCTTTCCGACATCTTGGtagtaaagacagtgaaaaatggtAGTCCCATTCACGCAAGAAGGCACCTATCTACCTATTCTCCTCATGGCAGTTGATAACAGACTTTTCTAACAGCTTGAATTGCATCTGAGGCTTGTAATTTGTAGTTACACTAAGAACTATTTATTGCAGAGTATTCTCTTTTCAAGGCCAGTGTGGATCATGATGACAGAAGCTATTTCATATAtgtaaatatttcaaaacattcaATTCAGAGttgcaaatacattttttacaaatatGTGTAATTTCATCCAATCAAAATACAACATTTTGGCCCTACTTTGAAAGGCATATGAAGTAAAAGTACACTCAAAAGTATTGCTTTGAAATCATTGCATTGGCTTAGTGTACTGAATGTTATTAAGGAAAAACTAGAATTCAAAAGAGGAATGTCTCAAATCTTCCCTTGTCATCAAATGAAAATTGAAAAGGCTTTGAAATCATTTTGCACATATTCAAAGATGTCTTTTGCGTATTGTTGAAGCTGGAAGAAATAACTGAAGTTGCTATGGGGTTGCGAGGTGAGTGATGGGGGGCATAAGGTATGTGGGCAAACGGTTTGATTGTACAGTGACAGAAAAAAATGGTTAACACTCCTAACAACAAGCTGCTATGGAGGAATATTCCCAGCAAAGTTGCATGACTTTAaatgaaatgaaaatgaaaagaaaaacaatCCTTTTTTTTCTCAAAGTGTTTGCTGCTATTTTGTGGATATTTGTATTAGTTAAATGTCAATATACTGCCATGTAATAGAATTTCTCATAGAAAATGATGATATTATTGACATTGTCATTTGTAGTGTATTGGAATGTGATCAGATTTTTCTTACTATGTTTTATGATTTCTGCTCTATtccaaaaaagaaaaaaagaaaacgtaAAAAAATAGAGCTCCTGTTTCCTTCACTATACCTCATGCTACAGACAAAAATATCTGATTATTTCGTCTGAGTTTTACTTTAATTCTGACtgtatctttttttttatttgtctGTCCATTTTGAAAATTTGAATACTATTATCCAAATGGGTCCTTCAGGGAGCTAGTCGAAAGCATTGATTGAACCTGGTGACATAACAACCAACCTGATGTTAGAAAGTTGTTATAACTAGTTTAAAACACCTTTATAACTCCTTTTTAAGCTGTTTCATTAAAAGAGACTATCCCCCATTAGGCCGTTGATGgcccttatatatatatatatatttataaagctTTTGTACAAATTGAAAACAGATTTTTGTAAATGGCATGTTTACCTATTAAGCCATAGGTTGTTTTCTGATAGCGATTTAACACCgttttgataataaaaaaaaatgtacctcATGTCATCAGCTCGAAACGACCAGAGACATGATGTTATCAATCATGTGTTTTTGCTGCagcacaataaaaaataaataaccatAAAGA

Function

symbol description
ccnd1 Predicted to enable cyclin-dependent protein serine/threonine kinase regulator activity and transcription corepressor activity. Acts upstream of or within camera-type eye morphogenesis; neuron cellular homeostasis; and regulation of neural retina development. Predicted to be part of cyclin-dependent protein kinase holoenzyme complex and transcription repressor complex. Predicted to be active in cytoplasm and nucleus. Is expressed in several structures, including digestive system; hematopoietic system; immature eye; nervous system; and neural tube. Human ortholog(s) of this gene implicated in several diseases, including carcinoma (multiple); colorectal cancer; hematologic cancer (multiple); invasive lobular carcinoma; and von Hippel-Lindau disease. Orthologous to human CCND1 (cyclin D1).

NR:

description
G1/S-specific cyclin-D1-like

GO:

id name namespace
GO:0000079 regulation of cyclin-dependent protein serine/threonine kinase activity biological_process
GO:0031571 mitotic G1 DNA damage checkpoint biological_process
GO:0000122 negative regulation of transcription by RNA polymerase II biological_process
GO:0048593 camera-type eye morphogenesis biological_process
GO:0051301 cell division biological_process
GO:0017053 transcription repressor complex cellular_component
GO:0019901 protein kinase binding molecular_function
GO:0003714 transcription corepressor activity molecular_function

KEGG:

id description
K04503 CCND1; G1/S-specific cyclin-D1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036979616.1 True 3880 mRNA 0.41 5 51479046 51491719

Neighbor

gene id symbol gene type direction distance location
zgc:101566 LOC106573100 coding downstream 334301 51041431 ~ 51144745 (-)
LOC110532401 NA coding downstream 487648 50897530 ~ 50991398 (-)
mapk8ip1a LOC106573101 coding downstream 590550 50871475 ~ 50888496 (-)
LOC110532393 ckap5 coding downstream 628378 50808713 ~ 50850668 (-)
LOC110524514 borcs5 coding downstream 694007 50777716 ~ 50792069 (-)
LOC110524599 NA coding upstream 181834 51601527 ~ 51674973 (-)
LOC110524618 LOC106573092 coding upstream 359263 51850982 ~ 51886676 (-)
LOC110524646 LOC106573087 coding upstream 500718 51992437 ~ 52100196 (-)
LOC118966705 LOC106573087 coding upstream 700903 52192622 ~ 52197205 (-)
LOC110524655 LOC106573085 coding upstream 715077 52206796 ~ 52321595 (-)
G56446 NA non-coding downstream 12305 51466516 ~ 51466741 (-)
G56429 NA non-coding downstream 26964 51451765 ~ 51452082 (-)
G56427 fgf3 non-coding downstream 27843 51450631 ~ 51451203 (-)
G56405 NA non-coding downstream 43838 51435004 ~ 51435208 (-)
G56391 NA non-coding downstream 54126 51424685 ~ 51424920 (-)
G56766 NA non-coding upstream 192217 51683936 ~ 51694900 (-)
G56834 NA non-coding upstream 272456 51764175 ~ 51764498 (-)
G57056 LOC106573091 non-coding upstream 302621 51794340 ~ 51843215 (-)
G57096 NA non-coding upstream 352766 51844485 ~ 51845022 (-)
G56372 NA other downstream 74703 51400727 ~ 51412569 (-)
G55627 NA other downstream 711615 50765363 ~ 50767431 (-)
G55408 NA other downstream 1066918 50411634 ~ 50412128 (-)
LOC110532382 LOC106573120 other downstream 2493129 48971580 ~ 49044257 (-)
G56764 NA other upstream 254898 51746617 ~ 51747220 (-)
G57742 NA other upstream 1004179 52495898 ~ 52496234 (-)
G58565 LOC106561659 other upstream 1647739 53139458 ~ 53140304 (-)
LOC110525078 LOC105021811 other upstream 1843005 53334724 ~ 53338484 (-)
G58718 LOC100194703 other upstream 1934245 53425964 ~ 53426316 (-)

Expression


Co-expression Network