trnap-agg


Basic Information

Item Value
gene id trnap-agg
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 51630832 ~ 51630903 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>trnap-agg
ggctcgttggtctaggggtatgattctcgcttagggtgcgagaggtcccgggttcaaatcccggacgagccc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
trnap-agg True 72 mRNA 0.47 1 51630832 51630903

Neighbor

gene id symbol gene type direction distance location
trnap-ugg-2 NA coding upstream 593 51630168 ~ 51630239 (+)
LOC110524584 LOC106573153 coding upstream 172035 51455131 ~ 51458797 (+)
LOC110524575 fgf3 coding upstream 179372 51449353 ~ 51451460 (+)
LOC110524569 LOC106573096 coding upstream 206529 51358288 ~ 51424303 (+)
shank2b LOC106573098 coding upstream 289199 51214830 ~ 51342260 (+)
LOC110524604 LOC106573091 coding downstream 171094 51801997 ~ 51852291 (+)
LOC110524623 LOC106573089 coding downstream 257497 51888400 ~ 51894917 (+)
LOC110524629 LOC106573088 coding downstream 269420 51900323 ~ 51917984 (+)
LOC110524688 LOC106573082 coding downstream 889603 52520506 ~ 52524718 (+)
LOC110524698 LOC106573080 coding downstream 897875 52528778 ~ 52551209 (+)
G56554 NA non-coding upstream 22841 51607614 ~ 51607991 (+)
G56507 NA non-coding upstream 65059 51549369 ~ 51565773 (+)
G56487 NA non-coding upstream 74963 51518735 ~ 51555869 (+)
G56475 NA non-coding upstream 130389 51500205 ~ 51500443 (+)
G56455 NA non-coding upstream 156911 51473696 ~ 51473921 (+)
G56541 NA non-coding downstream 42672 51673575 ~ 51674734 (+)
G56835 NA non-coding downstream 133878 51764781 ~ 51764994 (+)
G56860 NA non-coding downstream 155553 51786456 ~ 51786792 (+)
G56861 NA non-coding downstream 155933 51786836 ~ 51787037 (+)
G56916 NA non-coding downstream 215027 51845930 ~ 51846185 (+)
LOC118964841 NA other upstream 1546836 50037523 ~ 50184257 (+)
G53181 NA other upstream 2736920 48893497 ~ 48893912 (+)
G52324 NA other upstream 3247575 48380542 ~ 48383257 (+)
G52080 NA other upstream 3605874 48006674 ~ 48024958 (+)
LOC118936380 LOC106581842 other downstream 2035312 53632830 ~ 53705421 (+)
G59031 NA other downstream 2357237 53988140 ~ 53988597 (+)
LOC110525327 LOC106573036 other downstream 2413946 54044813 ~ 54089850 (+)
G59963 NA other downstream 3090285 54721188 ~ 54721463 (+)
G61202 LOC106573044 other downstream 4274605 55905508 ~ 55923376 (+)

Expression


Co-expression Network