LOC110524618 (LOC106573092)


Basic Information

Item Value
gene id LOC110524618
gene name LOC106573092
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 51850982 ~ 51886676 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021604448.2
GAAGAAGATAGGCGGCGGTAAACCCCGCGTAACATACTGCACTCCGCCAATCAAACACCGACGAGGAAGAGGTTGAATTTTACTCGTGGTGTTTGTTGTCAAATGTTGCACATGCAGAAAGGGTTGGAACTGTATAAAAAAATCAACCACTTTATCGCAAAAAGTGCAAAACTACCTTTTAATACACAGAGCACGTTCAACTGGTTTTACATTCTCCAAGTCCCACATCGAGGAGCCCTTCAGCAACTTGGATGGCGTACAGGCGAGACCGAAGCCGAATCAGAGAGGCCACCGATGAGCATATTTCAGAGAGAGCGGGAACGTACCAGAGAGTTGTGAATGTTGTTGAGAGGAGGACTGCTGTGACAAGACCGGAGCAAGAATATGACAGAGAATTTGAATATGAAACCAAGCGGTATGGTGGCGTTCAAAGTTACCATGACGATGACCAGATAGGATACCCTAGCGACAACATTCACACAGGAAGTGATCGTGGGTACCATGGTGACGTGGTAGGGAGCATCCGAGGGAAGAACTCCCCATCTCCCCGACAGGAGGACTACAGGGATCCATACTACAGGGGATCCAGAGTTGATTCTCAGATGGGCCGTCAAGGAGGGATGAGGAACAGCAGCAGAGTGGGCTCCCATCCCAGCAGCAGAGTTCAAGTGATAGCTCCTCTCTCGAGGACCATGTCTCCAGCCTACCCCAACCTGAGGGAGAACCCTGAGGGTATCAGGCGGAGAGTCCTGGGCCCCTACCCTGCAAGCCCTGCCGGGGACTCGTACACTAGATTACGGGACCGCTCTCCTATCAGAAGGGATACTCCACCAATAACAGGCTCCGTTCTCATGCGCTCCGGGTCCAACACCAGCAGAAGGAGCTACTCCCCAGACAGGGACCAGGCTGGCTTCCCCTACCATCAGAAGAGGTATAAAGAAGAGCCTCACAGCCAGAGCAGAGAGCCTGATAAGCCCAGGTTGCTAGGCCACACAAAGACTGCCTCCATAGACGGTTCTCCACACAGCGCTGTCTCAATCAAGGAGGAACTTGACCCCACCCCAGCCCTGCTAGCAGAGCCTGAGGACACAGTGCCGGCCAAGGATGAGACCGACCAGACACAGAAGGCCAACTTCAAGACACGGCGCTCTCAAGCCATCGCAGCTAAAGCCCTCGAAATTGAGAAGctaTACAAGCAGGACTGCGAGACGTTTGGAACGGTTGTCAAGATGCTGGTGGTCAAGGAGCCCAGTCTGGAGAAGCTGCTCCAGAACCCTCTGAAAGACAACCTGATTGAGATCAGGGAGCTTTGCCTTGACGACCTCCGACACTTTATCATAGAGCTGGACCAGGTCATGAAGCCAGAACCATCAACATGAGGGGGAACCACAAAACCCTTATTACGTGCAGGTATTGATGGACCAGAGGTGGCATTTGTGTGGTGGCATAGAATACTGTGAGAGGAGGCAACCTAGTGTGGCATCCTCTCCACACTGTGATTAAGAAGAAATCATATTCATAGAAAAAAAATggtaccccttttttctccccaatttcgtgatattcAATTGATAGTTAGTCTTGTcgccatcgctgcaactcccgtacggactcgggagaggcaaaggtcgagagccatgcatcctctgaaacacgaccctgccaagatATTCAAGTACATTTTCAAGAAAAAACACTAACAATTGTTCACTAAAATATTTTATTATTGGAAACATGCTTATTTGAGGTCACTTTATGGCGTTAGAAagaatatttttgtttttttcccatgCTGTTTATATAGATTTCAGGTGTCGTTCCTTTAAACCTCATGTCCAGCAGTAATTTCTTCACTCCTTAGTTAGACACATTGCAGAACTCCACTTCTGGCTTTCTGACCAACTTAAACAACCAAATCACACAGATTTTTTAAAaggtacactgtgtgtgtgtgtgtacaccgaAGGAATGGAAAGAATACGCTTTTTGGAGTTCAGTCATCAACATTTGTGTACCGTAATGAAGAGTTTTGAGTTGTTTCAATACCGTTTAGTTCTCTCCAGAAAACTTGTCCGAAAACCAATGTTTTGCATATTTTATGGTGTTTACtgtcatacagtaccagtcaaaagtttggacacacctactcattcaagggtttttctttatttttactattttctacattgtagaataatagtgaagacaaactatggaatcatgtagtaaccaagaaagtgttaaacagagcaaaatgtattttctatttgagattcttcaaagtagccaccctttgcattgacagttttgcacactcttggcattctctcaaccagcttcacctggaatgcttttccaatcgtcttgaaggagttccctgggtcattgtcctgttgaaaaacaaatgatagtcccactaagcgcaaaccaaacttttgactggtactgtctgtTCTTTGTGTTACTTTTTCTGTTAGGTAATAAAAGTTATTTAACAAGC
>XM_036979643.1
GAAGAAGATAGGCGGCGGTAAACCCCGCGTAACATACTGCACTCCGCCAATCAAACACCGACGAGGAAGAGGTTGAATTTTACTCGTGGTGTTTGTTGTCAAATGTTGCACATGCAGAAAGGGTTGGAACTGTATAAAAAAATCAACCACTTTATCGCAAAAAGTGCAAAACTACCTTTTAATACACAGAGCACGTTCAACTGGTTTTACATTCTCCAAGTCCCACATCGAGGAGCCCTTCAGCAACTTGGATGGCGTACAGGCGAGACCGAAGCCGAATCAGAGAGGCCACCGATGAGCATATTTCAGAGAGAGCGGGAACGTACCAGAGAGTTGTGAATGTTGTTGAGAGGAGGACTGCTGTGACAAGACCGGAGCAAGAATATGACAGAGAATTTGAATATGAAACCAAGCGGTATGGTGGCGTTCAAAGTTACCATGACGATGACCAGATAGGATACCCTAGCGACAACATTCACACAGGAAGTGATCGTGGGTACCATGGTGACGTGGTAGGGAGCATCCGAGGGAAGAACTCCCCATCTCCCCGACAGGAGGACTACAGGGATCCATACTACAGGGGATCCAGAGTTGATTCTCAGATGGGCCGTCAAGGAGGGATGAGGGAGAACCCTGAGGGTATCAGGCGGAGAGTCCTGGGCCCCTACCCTGCAAGCCCTGCCGGGGACTCGTACACTAGATTACGGGACCGCTCTCCTATCAGAAGGGATACTCCACCAATAACAGGCTCCGTTCTCATGCGCTCCGGGTCCAACACCAGCAGAAGGAGCTACTCCCCAGACAGGGACCAGGCTGGCTTCCCCTACCATCAGAAGAGGTATAAAGAAGAGCCTCACAGCCAGAGCAGAGAGCCTGATAAGCCCAGGTTGCTAGGCCACACAAAGACTGCCTCCATAGACGGTTCTCCACACAGCGCTGTCTCAATCAAGGAGGAACTTGACCCCACCCCAGCCCTGCTAGCAGAGCCTGAGGACACAGTGCCGGCCAAGGATGAGACCGACCAGACACAGAAGGCCAACTTCAAGACACGGCGCTCTCAAGCCATCGCAGCTAAAGCCCTCGAAATTGAGAAGctaTACAAGCAGGACTGCGAGACGTTTGGAACGGTTGTCAAGATGCTGGTGGTCAAGGAGCCCAGTCTGGAGAAGCTGCTCCAGAACCCTCTGAAAGACAACCTGATTGAGATCAGGGAGCTTTGCCTTGACGACCTCCGACACTTTATCATAGAGCTGGACCAGGTCATGAAGCCAGAACCATCAACATGAGGGGGAACCACAAAACCCTTATTACGTGCAGGTATTGATGGACCAGAGGTGGCATTTGTGTGGTGGCATAGAATACTGTGAGAGGAGGCAACCTAGTGTGGCATCCTCTCCACACTGTGATTAAGAAGAAATCATATTCATAGAAAAAAAATggtaccccttttttctccccaatttcgtgatattcAATTGATAGTTAGTCTTGTcgccatcgctgcaactcccgtacggactcgggagaggcaaaggtcgagagccatgcatcctctgaaacacgaccctgccaagatATTCAAGTACATTTTCAAGAAAAAACACTAACAATTGTTCACTAAAATATTTTATTATTGGAAACATGCTTATTTGAGGTCACTTTATGGCGTTAGAAagaatatttttgtttttttcccatgCTGTTTATATAGATTTCAGGTGTCGTTCCTTTAAACCTCATGTCCAGCAGTAATTTCTTCACTCCTTAGTTAGACACATTGCAGAACTCCACTTCTGGCTTTCTGACCAACTTAAACAACCAAATCACACAGATTTTTTAAAaggtacactgtgtgtgtgtgtgtacaccgaAGGAATGGAAAGAATACGCTTTTTGGAGTTCAGTCATCAACATTTGTGTACCGTAATGAAGAGTTTTGAGTTGTTTCAATACCGTTTAGTTCTCTCCAGAAAACTTGTCCGAAAACCAATGTTTTGCATATTTTATGGTGTTTACtgtcatacagtaccagtcaaaagtttggacacacctactcattcaagggtttttctttatttttactattttctacattgtagaataatagtgaagacaaactatggaatcatgtagtaaccaagaaagtgttaaacagagcaaaatgtattttctatttgagattcttcaaagtagccaccctttgcattgacagttttgcacactcttggcattctctcaaccagcttcacctggaatgcttttccaatcgtcttgaaggagttccctgggtcattgtcctgttgaaaaacaaatgatagtcccactaagcgcaaaccaaacttttgactggtactgtctgtTCTTTGTGTTACTTTTTCTGTTAGGTAATAAAAGTTATTTAACAAGC
>TU63471
TGAAAGAAAATGACAGCAACAACAACCTCGTTGACTCTAATCAGTGTTGCCCTCACACGCTTTGAATTTGAAACCTGAATCAGTTAAGCCATTTGAACTGCTGTGTCCTGCCTGGCGCGCTAACCCATTAGCTGTAACCTTTACCCTCCCAGGAGGAACTTGACCCCACCCCAGCCCTGCTAGCAGAGCCTGAGGACACAGTGCCGGCCAAGGATGAGACCGACCAGACACAGAAGGCCAACTTCAAGACACGGCGCTCTCAAGCCATCGCAGCTAAAGCCCTCGAAATTGAGAAGctaTACAAGCAGGACTGCGAGACGTTTGGAACGGTTGTCAAGATGCTGGTGGTCAAGGAGCCCAGTCTGGAGAAGCTGCTCCAGAACCCTCTGAAAGACAACCTGATTGAGATCAGGGAGCTTTGCCTTGACGACCTCCGACACTTTATCATAGAGCTGGACCAGGTCATGAAGCCAGAACCATCAACATGAGGGGGAACCACAAAACCCTTATTACGTGCAGGTATTGATGGACCAGAGGTGGCATTTGTGTGGTGGCATAGAATACTGTGAGAGGAGGCAACCTAGTGTGGCATCCTCTCCACACTGTGATTAAGAAGAAATCATATTCATAGAAAAAAAATggtaccccttttttctccccaatttcgtgatattcAATTGATAGTTAGTCTTGTcgccatcgctgcaactcccgtacggactcgggagaggcaaaggtcgagagccatgcatcctctgaaacacgaccctgccaagatATTCAAGTACATTTTCAAGAAAAAACACTAACAATTGTTCACTAAAATATTTTATTATTGGAAACATGCTTATTTGAGGTCACTTTATGGCGTTAGAAagaatatttttgtttttttcccatgCTGTTTATATAGATTTCAGGTGTCGTTCCTTTAAACCTCATGTCCAGCAGTAATTTCTTCACTCCTTAGTTAGACACATTGCAGAACTCCACTTCTGGCTTTCTGACCAACTTAAACAACCAAATCACACAGATTTTTTAAAaggtacactgtgtgtgtgtgtgtacaccgaAGGAATGGAAAGAATACGCTTTTTGGAGTTCAGTCATCAACATTTGTGTACCGTAATGAAGAGTTTTGAGTTGTTTCAATACCGTTTAGTTCTCTCCAGAAAACTTGTCCGAAAACCAATGTTTTGCATATTTTATGGTGTTTACtgtcatacagtaccagtcaaaagtttggacacacctactcattcaagggtttttctttatttttactattttctacattgtagaataatagtgaagacaaactatggaatcatgtagtaaccaagaaagtgttaaacagagcaaaatgtattttctatttgagattcttcaaagtagccaccctttgcattgacagttttgcacactcttggcattctctcaaccagcttcacctggaatgcttttccaatcgtcttgaaggagttccctgggtcattgtcctgttgaaaaacaaatgatagtcccactaagcgcaaaccaaacttttgactggtactgtctgtTCTTTGTGTTACTTTTTCTGTTAGGTAATAAAAGTTATTTAACAAGC

Function

NR:

description
periphilin-1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021604448.2 False 2500 mRNA 0.46 11 51850982 51886676
XM_036979643.1 False 2407 mRNA 0.46 10 51850982 51886676
TU63471 True 1609 lncRNA 0.39 2 51850982 51866882

Neighbor

gene id symbol gene type direction distance location
LOC110524599 NA coding downstream 176009 51601527 ~ 51674973 (-)
LOC110524590 ccnd1 coding downstream 359263 51479046 ~ 51491719 (-)
zgc:101566 LOC106573100 coding downstream 706237 51041431 ~ 51144745 (-)
LOC110532401 NA coding downstream 859584 50897530 ~ 50991398 (-)
mapk8ip1a LOC106573101 coding downstream 962486 50871475 ~ 50888496 (-)
LOC110524646 LOC106573087 coding upstream 105761 51992437 ~ 52100196 (-)
LOC118966705 LOC106573087 coding upstream 305946 52192622 ~ 52197205 (-)
LOC110524655 LOC106573085 coding upstream 320120 52206796 ~ 52321595 (-)
LOC110524680 LOC106573083 coding upstream 447219 52333895 ~ 52448300 (-)
LOC110532407 NA coding upstream 572581 52459257 ~ 52462122 (-)
G57097 LOC106573091 non-coding downstream 1882 51848061 ~ 51849100 (-)
G57096 NA non-coding downstream 5960 51844485 ~ 51845022 (-)
G57056 LOC106573091 non-coding downstream 7767 51794340 ~ 51843215 (-)
G56834 NA non-coding downstream 86484 51764175 ~ 51764498 (-)
G56766 NA non-coding downstream 156082 51683936 ~ 51694900 (-)
G57114 NA non-coding upstream 1728 51888404 ~ 51889159 (-)
G57263 NA non-coding upstream 226185 52112861 ~ 52113083 (-)
G57281 NA non-coding upstream 241150 52127826 ~ 52128078 (-)
G57284 NA non-coding upstream 246832 52133508 ~ 52133750 (-)
G56764 NA other downstream 103762 51746617 ~ 51747220 (-)
G56372 NA other downstream 446639 51400727 ~ 51412569 (-)
LOC110524514 borcs5 other downstream 1058913 50777716 ~ 50792069 (-)
G55627 NA other downstream 1083551 50765363 ~ 50767431 (-)
G55408 NA other downstream 1438854 50411634 ~ 50412128 (-)
G57742 NA other upstream 609222 52495898 ~ 52496234 (-)
G58565 LOC106561659 other upstream 1252782 53139458 ~ 53140304 (-)
LOC110525078 LOC105021811 other upstream 1448048 53334724 ~ 53338484 (-)
G58718 LOC100194703 other upstream 1539288 53425964 ~ 53426316 (-)
G58842 NA other upstream 1701746 53588422 ~ 53588770 (-)

Expression


Co-expression Network