LOC110524623 (LOC106573089)


Basic Information

Item Value
gene id LOC110524623
gene name LOC106573089
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 51888400 ~ 51894917 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021604462.2
GGTACTTTGAGTGCCTTGAGAGAGTGATTGGGTAGGCGTTGCCACGTGATCATCATCATCCTTCCACTGGAGTTCTACGACAGCAGAGAGCGGCGTTGGTAATTTCCCCGTCAAATTAATCTATATTGAGTTCAAACAAATAAAGGTTTTATAGGATGGGAGACAAGAAGAGCCCCACAAGgcCGAAGCGGCAACCCAAGCCCTCTTCTGACGATGCCTACTGGGACTGTAGCGTATGTACTTTCAGGAACACTGCCGAAGCTTTCAAGTGTATGATGTGCGATGTCAGAAAGGGAACGTCAACACGAAAGCCTCGTCCTGTCTCCCAAATGGTTGCCCAGCAAGTCACTGCACAGTTTGCTTCACCCACACAACCCAAAAAAGAGAAAAAGGAGAAATCGGAGAAAGAGAAGAGTGAAAAGGAACCAACACAGAAAAAGAACAGCCACAAGAAGACGAGGCCCAGGTTAAAAAACGTGGACCGGAGCAGTGCCCAGCACCTAGAGGTAACGGTGGGTGACCTGACGGTCATAATCACAGACTTTAAGGAGAAAACCAAGCCCGCCTCCACTCCTTCCAGTGCCGCCTCGGCAGACCAGCACAGCCAGAGCGGCAACACCAGTTCTGACAACACTGAAAGGGGGGTGTCCCGGTCGTCCTCGCCGCGGGGGGAGGGGTCCTCAGTTAACAGCGAGAGTCactaatctccctctctctcccatttcctCCCTCCTCACCTAACATAGTCTTGTGGAACCAGACAAGTGTGTCTCTGAATATTGCATACAAGTCTGGCATGCAAGATTACACCCAACGCTACATACACCCTTATGTCTCCCCCATATCCATCTCCCCACACTCCAACCCAACATTTCAACATGCACACATTGTAAAAaaagaaataataataaaataaaacatatgtATTATGAGGCTGGTGCTGAGAGGACGCTGTGTATCATCAACGAATTGGTTTCAGCCAATATCTGGGTCGTGTTCAGTCGGCAGCAAGCAGAAGAAAATTGACTGAAACTGGAAGGTAATACCTGGACTTATCCAATAAATAAGAAACGATCatgtttgttttctgttgcacaaagttttaaaacattttgttatggtgtgccctaatgaaaaCGACCATGGCCTGAGTGAACTGAAGCTGGGTCTTGACTGTGTTGAATGAACCCTGCCTTGCATGCACAGCTAGCTGAGTGATGCCACGGGATCTGATGGTATTTACTTACAACACCTCAGTGTTATCGTGTCATCCCTCATCACACACTTAGTGGTTGGTTGGTTTCTGTCTCTTACCAATGTGGACTATTGCAGAATAAGAGAGTGCTTTAGCTACAGAGGAATACGAATATGCATTatgagtagggttgcaaaattctggtaacttaCCCAAAATCcaaaggttttccagaaatcacCTGGACGATTCCCCGACTCAGAGAATAAGTAGGAAATTCAGGATTCCTCCAACTGAGAGAACTGGAAAACCTAGGAATTCTGGCAAAGTTACCAAAATTTGCAACAACCCTAATTATGAGAGAATAAATGTGAAGCGAGTGGTCCATCTCTTGATTGTAGATTGACAAAGATTAATTTTGTTAGCAGCAGATTGCACCTGCTGGCATATGGTGTACATTAATTAATGAGAAGCTATTGGACCAGTTTCCCAGATACAGAGTAGTCCTTGAATAATCACTTTGAATGGAGAATCTCCATATAACATTCTTCTTAGTCCAACAGTTGGctgaatctgtgtctgggaaacaggCCCATTGTTTTATAAAGCATTTCAGTTTGGTCAAAATTTTACTGCACATGTTACTGAATCATATCACTGCTTTATGTTACTGGTTATAGCCAGCCATGTTGTCATATGTACATCAATGAGCATCTCAATTATTGCGTTACTATTTAATGTTTGATTCAAAATTGAGAATATTGTTAAGAAGTATGCTTCTCTTCCACAGTTTGTAGAGTCAAGCATGCTGTCATCCAACAGTGGTTTATattgaaaatatgaaataaaacTAAACTGATAGGTT

Function

NR:

description
YY1-associated factor 2

GO: NA

KEGG:

id description
K11468 YAF2; YY1-associated factor 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021604462.2 True 2060 mRNA 0.43 4 51888400 51894917

Neighbor

gene id symbol gene type direction distance location
LOC110524604 LOC106573091 coding upstream 36625 51801997 ~ 51852291 (+)
trnap-agg NA coding upstream 257497 51630832 ~ 51630903 (+)
trnap-ugg-2 NA coding upstream 258161 51630168 ~ 51630239 (+)
LOC110524584 LOC106573153 coding upstream 429603 51455131 ~ 51458797 (+)
LOC110524575 fgf3 coding upstream 436940 51449353 ~ 51451460 (+)
LOC110524629 LOC106573088 coding downstream 5406 51900323 ~ 51917984 (+)
LOC110524688 LOC106573082 coding downstream 625589 52520506 ~ 52524718 (+)
LOC110524698 LOC106573080 coding downstream 633861 52528778 ~ 52551209 (+)
LOC110524804 NA coding downstream 803763 52698680 ~ 52702647 (+)
LOC110524813 LOC106573076 coding downstream 812633 52707550 ~ 52722838 (+)
G56918 NA non-coding upstream 41283 51846888 ~ 51847117 (+)
G56917 NA non-coding upstream 41610 51846487 ~ 51846790 (+)
G56916 NA non-coding upstream 42215 51845930 ~ 51846185 (+)
G56861 NA non-coding upstream 101363 51786836 ~ 51787037 (+)
G56985 NA non-coding downstream 96192 51991109 ~ 51993312 (+)
G57262 NA non-coding downstream 217958 52112875 ~ 52113109 (+)
G57312 NA non-coding downstream 266635 52161552 ~ 52161839 (+)
G57337 NA non-coding downstream 307787 52202704 ~ 52208886 (+)
G57364 NA non-coding downstream 346897 52241814 ~ 52259706 (+)
LOC118964841 NA other upstream 1804404 50037523 ~ 50184257 (+)
G53181 NA other upstream 2994488 48893497 ~ 48893912 (+)
G52324 NA other upstream 3505143 48380542 ~ 48383257 (+)
G52080 NA other upstream 3863442 48006674 ~ 48024958 (+)
LOC118936380 LOC106581842 other downstream 1771298 53632830 ~ 53705421 (+)
G59031 NA other downstream 2093223 53988140 ~ 53988597 (+)
LOC110525327 LOC106573036 other downstream 2149932 54044813 ~ 54089850 (+)
G59963 NA other downstream 2826271 54721188 ~ 54721463 (+)
G61202 LOC106573044 other downstream 4010591 55905508 ~ 55923376 (+)

Expression


Co-expression Network