LOC110524629 (LOC106573088)


Basic Information

Item Value
gene id LOC110524629
gene name LOC106573088
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 51900323 ~ 51917984 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021604484.2
GACAGAAGGTGGAGCTCAAAGTTGACGTAAACACAACCCTAGTTAGTCAATGTAAATCCATATCTGAAAGAATGTTACGGTAGCACGGTTAAGTGCATTTTTTTTATTCACAAAATGCGATGTTATCTTCATGCACTTCTACTGTGCATGGTCTTTGCTGTCTTTTCGGTGCTGTATGTTTTTAATCAACTACCGGTAGCCTCGTCTTTTGAGTCGCAATACGAAGACGGATGGACCGACAGAAGAACAAAAAAATCCAGTGGCAGGCAACCCCAATTTGGGGCCCAAGACACTAGGCACATAGTCAGGAATGGTGAAGGAGTGCCAAGCCTTTTTGCCCACCAAGAACATGACAGGACCAGggagaagccagcctcCGCCAGCATCCAGGAGGCCACTAAAGATGAGCGGCTCCATCTGGCTGTAGTGGCCTGTGGTCCCAGACTAGAGGAGACTCTCACCATGTTAAAGTCTGCGCTCCTCTTCAGCGCCAAACTGCTACACTTTCACATTTTCGCAGAGGACCATCTGCATGGCAGCTTTGGAGAGTCTCTGGACTTGTGGCCCAGTGACTTCCAGACCAGGTTTAACTACACCATGTACCCCATCACCTTCCCCAGTGAGAACGCCAAGGAGTGGAAGAAACTCTTCAAACCCTGTGCTTCTCAAAGGCTCTTCCTTCCGTTGATCCTAAAAGACGTAGACTCTCTGCTGTACGTGGACACCGATATCTTGTTCCTTCAGCCTGTAGAGGAGATCTGgtccctgctctccctcttcaaCTCCACCCATCTGGCAGCCATGGCCCCTGAGCATGAGGAGCCACGCATCGCCTGGTACAACCGCTTCGCACGTCACCCTTACTATGGAAAGACCGGGGTCAACTCTGGCGTCATGCTCATGAACATGACCCGGATAAGAGAGAAATACTTCAAGAATGACATGACGTCAGTCCCCCTCAAATGGGTGGAGCTGCTGATGCCACTTCTCcagaaatataaactcaacatcaCCTGGGGAGACCAGGACCTGCTCAACATCATATTCCATCATAACCCAGAGAGCCTGTATGTGTTCCCGTGCCAATGGAACTACCGTCCAGACCACTGTATCTACGGCAGCAACTGTCTCGAGGCCGAACAAGAGGGCGTCTTCATTCTCCACGGAAATCGAGGTGTTTACCATGACGACAAGCAGCCAGCGTTCCGGGCCGTCTATGAAGCCATCCAGAAGTACACATTTGGGGACAACCTAGTCCAGTCCCTACTCCTCCCCCTGGAGGCAAATCTTCAGGAGACCAAACACACCTACTGTGGAAGAGCCAGTCACATGTTTACTAAGAGGTTAAAACGGAGCATCAGCATACTTCAACAGGAAACCATAGAGGGAAGGTGACGTATACCACTAGACTACCACTCTCCTACTACCATCGATGGCTGACTGACACTCTGTGGCACACCTCGAAACTATGCCCCCAGGAGTACAGGGAAGAGCATGCATTACTGGCATGTGTATATGATCCCAGGCGGGATTTAGCCCACGCTCTTTCCTCAACCGTCTATGCCCAAAGTTAGATGAATCCGTCTTCTGTTTACAAACGGGCAACAGCTACCGGCGCGTCGACACTGCTCCAAAGACAATTTCGAGGGGAAGATGATCAGTGTAACACCGTGTCTGTTTTCCTGTGGAGCTGTTGTTCCTCAAAAAACTTTGTCCCGTGAACGtgataatcatcaggttaggtaaCTGCAGTCAAAACGTGTGGGAAAGCGCTGAAATTAAATCTCTTTGCCCTCTACAGAATTGGACATTTCTATCATCTGAGTGCAAAAATGGTACACTTCACAATCGGGTTGCTGTATGTTTTTCACCTGTGATGAGAATGTCAGTCTGACGATCGCATTGCAATCCTCAGAAGTATTCAAGGAAGAGAACCCATCACGGTTCTTTATATGCCCCGCATGATccaaaagtatatattttatttaaagtATATGTTAATGTTATATCAATTAGATTTAAATGTTAGAATTAAATTGAAATTATACACCTGCAGTGTCATGAAGAATGACAACACACCGGTTAAAGTTTGTCATAACTATTCCATGAATGCAGTTTCATTGGTACAAAACTTGATTGTAAACAAATGCTAAAGGGAAGTATTTTGAGGTTTAGAATCTGAGGATATCAATATTGgtgttatacagtgcattcggaaagtattcagacaccttgacctttttcacattttgttacgttacaaccttattctaaaatggattcaattgtttttttcctccctcatcaatctacacacaataccccataatgagagaGCAGGTTTTTAGGTTTTTGGGGGGCAAATTTATAAAATAAATCtaactgaaatcacatttacataagtattgaagCCCTTTATTCAGTAGTTtcttgaaacacct
>XR_002473620.2
GTGGAGCTCAAAGTTGACGTAAACACAACCCTAGTTAGTCAATGTAAATCCATATCTGAAAGAATGTTACGGTAGCACGGTTAAGTGCATTTTTTTTATTCACAAAATGCGATGTTATCTTCATGCACTTCTACTGTGCATGGTCTTTGCTGTCTTTTCGGTGCTGTATGTTTTTAATCAACTACCGGTAGCCTCGTCTTTTGAGTCGCAATACGAAGACGGATGGACCGACAGAAGAACAAAAAAATCCAGTGGCAGGCAACCCCAATTTGGGGCCCAAGACACTAGGCACATAGTCAGGAATGGTGAAGGAGTGCCAAGCCTTTTTGCCCACCAAGAACATGACAGGACCAGAACTACAAATGCCTGTCTCAAGCTTCACATCACTCACCAGGGCtatgatgatctggacgagactgacaaatcgaggcaaagggagaagccagcctcCGCCAGCATCCAGGAGGCCACTAAAGATGAGCGGCTCCATCTGGCTGTAGTGGCCTGTGGTCCCAGACTAGAGGAGACTCTCACCATGTTAAAGTCTGCGCTCCTCTTCAGCGCCAAACTGCTACACTTTCACATTTTCGCAGAGGACCATCTGCATGGCAGCTTTGGAGAGTCTCTGGACTTGTGGCCCAGTGACTTCCAGACCAGGTTTAACTACACCATGTACCCCATCACCTTCCCCAGTGAGAACGCCAAGGAGTGGAAGAAACTCTTCAAACCCTGTGCTTCTCAAAGGCTCTTCCTTCCGTTGATCCTAAAAGACGTAGACTCTCTGCTGTACGTGGACACCGATATCTTGTTCCTTCAGCCTGTAGAGGAGATCTGgtccctgctctccctcttcaaCTCCACCCATCTGGCAGCCATGGCCCCTGAGCATGAGGAGCCACGCATCGCCTGGTACAACCGCTTCGCACGTCACCCTTACTATGGAAAGACCGGGGTCAACTCTGGCGTCATGCTCATGAACATGACCCGGATAAGAGAGAAATACTTCAAGAATGACATGACGTCAGTCCCCCTCAAATGGGTGGAGCTGCTGATGCCACTTCTCcagaaatataaactcaacatcaCCTGGGGAGACCAGGACCTGCTCAACATCATATTCCATCATAACCCAGAGAGCCTGTATGTGTTCCCGTGCCAATGGAACTACCGTCCAGACCACTGTATCTACGGCAGCAACTGTCTCGAGGCCGAACAAGAGGGCGTCTTCATTCTCCACGGAAATCGAGGTGTTTACCATGACGACAAGCAGCCAGCGTTCCGGGCCGTCTATGAAGCCATCCAGAAGtttcctctctccctgctcccccatTCCCTCCCCTCCCAGTCCTTTGAGGACAGCAGGCCTGAAGCCCATACTGTAGCAGGCATTTCTGGAGAACACTCTCATTCTCAGCACACAAAGAACTCAGTCAGTGTCTCTCCCTAGACGACCTATCCCAGCTTGCACTGAGGCTGCTTGGCAATAAACCCGGGCTCACCATTACTGATATGAGCCAAATCCACAGAAGAGTTGTAAAAAGTACACATTTGGGGACAACCTAGTCCAGTCCCTACTCCTCCCCCTGGAGGCAAATCTTCAGGAGACCAAACACACCTACTGTGGAAGAGCCAGTCACATGTTTACTAAGAGGTTAAAACGGAGCATCAGC
>XR_005052038.1
GTGGAGCTCAAAGTTGACGTAAACACAACCCTAGTTAGTCAATGTAAATCCATATCTGAAAGAATGTTACGGTAGCACGGTTAAGTGCATTTTTTTTATTCACAAAATGCGATGTTATCTTCATGCACTTCTACTGTGCATGGTCTTTGCTGTCTTTTCGGTGCTGTATGTTTTTAATCAACTACCGGTAGCCTCGTCTTTTGAGTCGCAATACGAAGACGGATGGACCGACAGAAGAACAAAAAAATCCAGTGGCAGGCAACCCCAATTTGGGGCCCAAGACACTAGGCACATAGTCAGGAATGGTGAAGGAGTGCCAAGCCTTTTTGCCCACCAAGAACATGACAGGACCAGAACTACAAATGCCTGTCTCAAGCTTCACATCACTCACCAGGGCtatgatgatctggacgagactgacaaatcgaggcaaagggagaagccagcctcCGCCAGCATCCAGGAGGCCACTAAAGATGAGCGGCTCCATCTGGCTGTAGTGGCCTGTGGTCCCAGACTAGAGGAGACTCTCACCATGTTAAAGTCTGCGCTCCTCTTCAGCGCCAAACTGCTACACTTTCACATTTTCGCAGAGGACCATCTGCATGGCAGCTTTGGAGAGTCTCTGGACTTGTGGCCCAGTGACTTCCAGACCAGGTTTAACTACACCATGTACCCCATCACCTTCCCCAGTGAGAACGCCAAGGAGTGGAAGAAACTCTTCAAACCCTGTGCTTCTCAAAGGCTCTTCCTTCCGTTGATCCTAAAAGACGTAGACTCTCTGCTGTACGTGGACACCGATATCTTGTTCCTTCAGCCTGTAGAGGAGATCTGgtccctgctctccctcttcaaCTCCACCCATCTGGCAGCCATGGCCCCTGAGCATGAGGAGCCACGCATCGCCTGGTACAACCGCTTCGCACGTCACCCTTACTATGGAAAGACCGGGGTCAACTCTGGCGTCATGCTCATGAACATGACCCGGATAAGAGAGAAATACTTCAAGAATGACATGACGTCAGTCCCCCTCAAATGGGTGGAGCTGCTGATGCCACTTCTCcagaaatataaactcaacatcaCCTGGGGAGACCAGGACCTGCTCAACATCATATTCCATCATAACCCAGAGAGCCTGTATGTGTTCCCGTGCCAATGGAACTACCGTCCAGACCACTGTATCTACGGCAGCAACTGTCTCGAGGCCGAACAAGAGGGCGTCTTCATTCTCCACGGAAATCGAGGTGTTTACCATGACGACAAGCAGCCAGCGTTCCGGGCCGTCTATGAAGCCATCCAGAAGTCCTTTGAGGACAGCAGGCCTGAAGCCCATACTGTAGCAGGCATTTCTGGAGAACACTCTCATTCTCAGCACACAAAGAACTCAGTCAGTGTCTCTCCCTAGACGACCTATCCCAGCTTGCACTGAGGCTGCTTGGCAATAAACCCGGGCTCACCATTACTGATATGAGCCAAATCCACAGAAGAGTTGTAAAAAGTACACATTTGGGGACAACCTAGTCCAGTCCCTACTCCTCCCCCTGGAGGCAAATCTTCAGGAGACCAAACACACCTACTGTGGAAGAGCCAGTCACATGTTTACTAAGAGGTTAAAACGGAGCATCAGC
>XM_021604473.2
GTGGAGCTCAAAGTTGACGTAAACACAACCCTAGTTAGTCAATGTAAATCCATATCTGAAAGAATGTTACGGTAGCACGGTTAAGTGCATTTTTTTTATTCACAAAATGCGATGTTATCTTCATGCACTTCTACTGTGCATGGTCTTTGCTGTCTTTTCGGTGCTGTATGTTTTTAATCAACTACCGGTAGCCTCGTCTTTTGAGTCGCAATACGAAGACGGATGGACCGACAGAAGAACAAAAAAATCCAGTGGCAGGCAACCCCAATTTGGGGCCCAAGACACTAGGCACATAGTCAGGAATGGTGAAGGAGTGCCAAGCCTTTTTGCCCACCAAGAACATGACAGGACCAGAACTACAAATGCCTGTCTCAAGCTTCACATCACTCACCAGGGCtatgatgatctggacgagactgacaaatcgaggcaaagggagaagccagcctcCGCCAGCATCCAGGAGGCCACTAAAGATGAGCGGCTCCATCTGGCTGTAGTGGCCTGTGGTCCCAGACTAGAGGAGACTCTCACCATGTTAAAGTCTGCGCTCCTCTTCAGCGCCAAACTGCTACACTTTCACATTTTCGCAGAGGACCATCTGCATGGCAGCTTTGGAGAGTCTCTGGACTTGTGGCCCAGTGACTTCCAGACCAGGTTTAACTACACCATGTACCCCATCACCTTCCCCAGTGAGAACGCCAAGGAGTGGAAGAAACTCTTCAAACCCTGTGCTTCTCAAAGGCTCTTCCTTCCGTTGATCCTAAAAGACGTAGACTCTCTGCTGTACGTGGACACCGATATCTTGTTCCTTCAGCCTGTAGAGGAGATCTGgtccctgctctccctcttcaaCTCCACCCATCTGGCAGCCATGGCCCCTGAGCATGAGGAGCCACGCATCGCCTGGTACAACCGCTTCGCACGTCACCCTTACTATGGAAAGACCGGGGTCAACTCTGGCGTCATGCTCATGAACATGACCCGGATAAGAGAGAAATACTTCAAGAATGACATGACGTCAGTCCCCCTCAAATGGGTGGAGCTGCTGATGCCACTTCTCcagaaatataaactcaacatcaCCTGGGGAGACCAGGACCTGCTCAACATCATATTCCATCATAACCCAGAGAGCCTGTATGTGTTCCCGTGCCAATGGAACTACCGTCCAGACCACTGTATCTACGGCAGCAACTGTCTCGAGGCCGAACAAGAGGGCGTCTTCATTCTCCACGGAAATCGAGGTGTTTACCATGACGACAAGCAGCCAGCGTTCCGGGCCGTCTATGAAGCCATCCAGAAGTACACATTTGGGGACAACCTAGTCCAGTCCCTACTCCTCCCCCTGGAGGCAAATCTTCAGGAGACCAAACACACCTACTGTGGAAGAGCCAGTCACATGTTTACTAAGAGGTTAAAACGGAGCATCAGCATACTTCAACAGGAAACCATAGAGGGAAGGTGACGTATACCACTAGACTACCACTCTCCTACTACCATCGATGGCTGACTGACACTCTGTGGCACACCTCGAAACTATGCCCCCAGGAGTACAGGGAAGAGCATGCATTACTGGCATGTGTATATGATCCCAGGCGGGATTTAGCCCACGCTCTTTCCTCAACCGTCTATGCCCAAAGTTAGATGAATCCGTCTTCTGTTTACAAACGGGCAACAGCTACCGGCGCGTCGACACTGCTCCAAAGACAATTTCGAGGGGAAGATGATCAGTGTAACACCGTGTCTGTTTTCCTGTGGAGCTGTTGTTCCTCAAAAAACTTTGTCCCGTGAACGtgataatcatcaggttaggtaaCTGCAGTCAAAACGTGTGGGAAAGCGCTGAAATTAAATCTCTTTGCCCTCTACAGAATTGGACATTTCTATCATCTGAGTGCAAAAATGGTACACTTCACAATCGGGTTGCTGTATGTTTTTCACCTGTGATGAGAATGTCAGTCTGACGATCGCATTGCAATCCTCAGAAGTATTCAAGGAAGAGAACCCATCACGGTTCTTTATATGCCCCGCATGATccaaaagtatatattttatttaaagtATATGTTAATGTTATATCAATTAGATTTAAATGTTAGAATTAAATTGAAATTATACACCTGCAGTGTCATGAAGAATGACAACACACCGGTTAAAGTTTGTCATAACTATTCCATGAATGCAGTTTCATTGGTACAAAACTTGATTGTAAACAAATGCTAAAGGGAAGTATTTTGAGGTTTAGAATCTGAGGATATCAATATTGgtgttatacagtgcattcggaaagtattcagacaccttgacctttttcacattttgttacgttacaaccttattctaaaatggattcaattgtttttttcctccctcatcaatctacacacaataccccataatgagagaGCAGGTTTTTAGGTTTTTGGGGGGCAAATTTATAAAATAAATCtaactgaaatcacatttacataagtattgaagCCCTTTATTCAGTAGTTtcttgaaacacct

Function

NR:

description
glucoside xylosyltransferase 1-like isoform X1

GO: NA

KEGG:

id description
K13676 GXYLT; UDP-D-xylose:beta-D-glucoside alpha-1,3-D-xylosyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021604484.2 False 2441 mRNA 0.46 7 51900323 51917984
XR_002473620.2 False 1670 mRNA 0.50 9 51900331 51916905
XR_005052038.1 False 1631 mRNA 0.50 9 51900331 51916905
XM_021604473.2 True 2514 mRNA 0.46 8 51900331 51917984

Neighbor

gene id symbol gene type direction distance location
LOC110524623 LOC106573089 coding upstream 5406 51888400 ~ 51894917 (+)
LOC110524604 LOC106573091 coding upstream 48548 51801997 ~ 51852291 (+)
trnap-agg NA coding upstream 269420 51630832 ~ 51630903 (+)
trnap-ugg-2 NA coding upstream 270084 51630168 ~ 51630239 (+)
LOC110524584 LOC106573153 coding upstream 441526 51455131 ~ 51458797 (+)
LOC110524688 LOC106573082 coding downstream 602522 52520506 ~ 52524718 (+)
LOC110524698 LOC106573080 coding downstream 610794 52528778 ~ 52551209 (+)
LOC110524804 NA coding downstream 780696 52698680 ~ 52702647 (+)
LOC110524813 LOC106573076 coding downstream 789566 52707550 ~ 52722838 (+)
LOC110524844 LOC106573071 coding downstream 964886 52882870 ~ 52889860 (+)
G56918 NA non-coding upstream 53206 51846888 ~ 51847117 (+)
G56917 NA non-coding upstream 53533 51846487 ~ 51846790 (+)
G56916 NA non-coding upstream 54138 51845930 ~ 51846185 (+)
G56861 NA non-coding upstream 113286 51786836 ~ 51787037 (+)
G56985 NA non-coding downstream 73125 51991109 ~ 51993312 (+)
G57262 NA non-coding downstream 194891 52112875 ~ 52113109 (+)
G57312 NA non-coding downstream 243568 52161552 ~ 52161839 (+)
G57337 NA non-coding downstream 284720 52202704 ~ 52208886 (+)
G57364 NA non-coding downstream 323830 52241814 ~ 52259706 (+)
LOC110524575 fgf3 other upstream 449388 51449353 ~ 51451460 (+)
LOC118964841 NA other upstream 1816327 50037523 ~ 50184257 (+)
G53181 NA other upstream 3006411 48893497 ~ 48893912 (+)
G52324 NA other upstream 3517066 48380542 ~ 48383257 (+)
G52080 NA other upstream 3875365 48006674 ~ 48024958 (+)
LOC118936380 LOC106581842 other downstream 1748231 53632830 ~ 53705421 (+)
G59031 NA other downstream 2070156 53988140 ~ 53988597 (+)
LOC110525327 LOC106573036 other downstream 2126865 54044813 ~ 54089850 (+)
G59963 NA other downstream 2803204 54721188 ~ 54721463 (+)
G61202 LOC106573044 other downstream 3987524 55905508 ~ 55923376 (+)

Expression


Co-expression Network