LOC110524646 (LOC106573087)


Basic Information

Item Value
gene id LOC110524646
gene name LOC106573087
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 51992437 ~ 52100196 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021604493.2
gtagtgtgtgagtgagtgagagacagagatagagagaggagacgagagagagagagaggagacgagagagagagaggagacgagagagagagagagagagagagagagaggcaccggCTGATGCTGAAACCGCTACCATTACTATCACAGCTGCTCCTACTGCTGTATCCATTACAGTGCTTCACATTAGAGCTTCCTTCTGTTCTACCACGCTGGAGCTTTGCATATCCTTGGCTCGGTGTGTATGAGGGTGTTTGTTTGCGAATGTGAGTGTGTcaatgtgtggtgtgtgtgagatgCCCACTACGGAGTGACTGATGAGAACGGGTGCACCGGTCTGGAGGGTGACCCCCTGTCCGTACGGTtccactgctgctgctgtcgcTCGGGGACGATTGGACGCCCGGCGTTGCCACGACGATTAGAATGGGCTGCAATCTGTGCACTTTACAGAAACGAGAGGAACACTATAAGCTGCTGTATGAGATCGCACAGGTGAATGGAAAGGACCTCTCCAAGGCCAGTCATGACGAGGCAGTGGAGGCGTTTCGCTCTGCTAAGGAACCCATTGTGGTGCAGGTCCTCAGGAGGAACACTGCTGGCCgcggcagccatgttagctccactCAGGAAGGGGACGTGGTGGACGTGGTGGACATGTGCACGCAGACCGACATCACCTTTGAACATATCATGGCCCTGGCCAAGCTCCGGGCCACTACTCCTCCCGTGCCGGACATCTGCCCCTTCCTGCTGTCTGACAGCTGTCACTCTCTCCACACCATGGAACAGGATTACTATGAGGGGAGAGCtgatggagggaggacagaggagtttGAGTATGAGGAGGTGGAGCTGTGTCGACTGAACAGCCAGGAGAAGCTGGGCCTGACGTTGTGCTACAGGACAGACGAGGAGGAGGACATGGCTATCTATGTCAGTGAGGTTGGGCCAAACAGCATCGCTGCAAGGGACGGGCGCATAAGAGAAGGAGACCACATTTTACAGATCAATGGTCAGGATgtgcaggacagagaggaggctgtaGCTGTGCTCTCCAGTGAAGACACAAGGAATATCATACTGCTGGTCGCCAGGCCCGAGTTACAGCTAGAGGAGGCGTGGTTGGATGATGAACACAGTGAGTTCCTGGAGCAGTTGAAGATGGAGATGTTGGAGGAGcagcagagagaagagatggagctGGAGGCACTACAGGAGGAACAGGAGCAGCCCAGAGGAACACAAGAGGATGACATCACTGCCACCTGTTCCTCCCTAACTCAGGACATGGACAGTGAGCTGGGGATGTCTGACCACAATGCCCTTCTAACCCACATCCAGAGACGACTGTCCCAGTGCCTGAGGGATAGACAGGACACTGGGCATCATCGTCtggacgaggaagaggaggaagaggagttggaggtggaggagggtgaCCGCTTCCAGCAGCTCCTGGAGCTGAAGTGTCAGATCCGTAACAGCGGGGAGTACGACCTGTTCTACAGCAGACACAGCACCATCGAGTGTAGTCTGGGAGAGCCGGCTGGCGGCGTGCAGCATGAGCTCCGCATGCTCAACGAGGAGCTCTGCAGCATTGAGCTTGAGTGCCAGAACATCATGCAGGCCCACAAGCTCCGCAAGGGACCGGGGGGGACCCAGAGAGACCAGGTGCAGCAGGTGTCAACCATAACCGGCCACCCAGTGCCCAAGGACCAAAGCTTCCTACGAGGCAGCAGGGACTCGCCCAGCAGGGGCAAGCTGGCTGACATCAACAAGCGCCAAGAGAAACCGGAGAAGTCAGACAAGGACAGCTCGAGCGCCTACAACACGGCAGAGAGCTCGCGCAGCACGCCGCTGGCCATGGACCGATCCCCCGAGCACTCCCTCCAGAGGAGGATGGTCACCATCACCAACCAGAGGAACCTCCGCAGCAGCCTGGCAAGCCTTCATGCCACAGCCAGCCCCAGTCCTAGTCCCAGCCCAACACAACGGTCGCTCCACCGAACCCCCATCCCAGGCAAGGCCAGTAGCCCCGACCACAGCCCCAACCGCTTCGAGTCGGACCAGACTGCCCCGGCAGACGATGAAAGGAGCGGGAACGGGAAGGTGAAGCCTCAGCATCCTCCCAGGGCTTCCCAGATCCCTTACCTCTCCCCGTCCCGTAGCTCCCAGCATAGGCAGCCCAACACCAACATCCCGGCACACTACCAGAGCTACATGCAGCTGATCCAGCAGCGCTCGGCCGTGGAGTACGCTCAGAGCCAGCTCAGCCTGCTCAGCGTGGTCAAGGAGCCCCAGTTGATCCCCACCAGCGAGCCCAAGATGGAGTGGAAGGTCAAGATCCGTTCCGATGGCACGCGCTACATCACAAAGAGACCCATCAGGGATAAGATCCTGCGGGAACGCGCCCTCAAGATCAAGGAGGAGCGCAGCGGCGGGATGACCACGGACGACGACGCTATGTCCGAGATGAAGATGGGGCGGTACTGGAGTAAGGAGGAGAGGAAGCAGCATCTGGTCAGGGCTAAAGAACAGCGGAGGAGACGAGAGTTCATGCAGCGGAGCAGGCTGGAAAGCCTGAGGGAGAGTCCTCAGAGCAGCAGCGAAGGACGCAAGGAGGTcagcatcatcgaactgagcCACAGGAAGATGATGAAGAAGCGCAACAAGAAGATCCTGGACAACTGGATGACCATTCAGGAACTGATGACTCACGGGGCCAAGGCCCCTGATGACCCCAGGGCCAAAGTACATAACGCCTTCCTGTCGGTCACCACTGTATAATATACAACAAACACAATCTAcagcagtgtttctcaaccttATTCATACCAGGGGCCAGCAAGCTATGGTTCTTACCTTCTTGGAAGGCAGCTTATTTTAATAGGGACTAACATGAGTACTGACAAAAAAATGAGTTTCAGCTATTAAACATCTTAGGGACCGGTCGGCAACATCCCAGGGACTGTTCCTGGCCCTTAGACCAGAGGTTGAGAAATACTGATCTAGCTACAGTACCCCATGTGGTATAATATACTTGCCTCGTTCAATGTGGCATTTTTATGAGGACGATAGTAATATTTTCACAACTTTGTTACCCGAAAAAATAGCATTTTGTAAAGAATTTTAACCAATGTCAattttgtttatatttttcttcatgtTTTTCATGATGTCACCCTCTTCCAGATCCAGAAGCACTTTTGTATGAGATTACTGTGCAATTATCTTTCTTAGTTGATCGTTTTCTTAGTTCATCCTGTGAAAATGttaaattattttcatatttCTGTTCTGTTATGCAGTGATTCCAACCCACGCAGATCAGGAGACTTGGACTCCCTCAGGGGGAGACATGTTGAATTTAATGTACAGTACACGGAAATGTATTGTCATCCTACTTCTTGCCGGTCTAGATTTGATGAACCAGCCATTAGATTTATCGTTCAGGACTTTCTACAAATGTCACAGATACATTCAGAACTTTCGGCCAATTCCACACGAGCCCATACGACTTCAACTACAACCACTGATTTACCAAATATAATGATACATTCCTTCAAAACAAGATGGTTAAGTTGGCATTTGATAACGATAACTTGGACTGAATGCATACAGCTTCTACCTGCATATTCTAAGGGAACCCATGTTGAGATAGACAGATTAGCTAAGGACTGGACTACCTGACCTATACCGTTTACAGTATGGATCATCTAAGCTTTTCAAGCCAAGAATGTATCCCCATTCCAAAACAAAGGACCATTTGCAATTTCCTTTGCAATCATTTTAATTGCAAAGGATTATTTTATTCCAAGAGGCTATGAAGACTAGCTGTGATATGTTGCAGCCAACAATTACTCTGCAGTGCATCAGGAGTTCTTCCAATGCAATACTGGTAAACCCTCTTTCATAAGATTTTGCATATTTATGTTTACATAATCCTTTATTTTACACACAGTAGGTATTGTACAATGTTAATGTTTCTCAACAAAGCCTTAAACAGTTGCCAATTAGATTCATGTAACTTTGTTGTGGCAAGAAATTCGTTATGAGCTGTCTATGGTTCTCTGTTGCAGCTCAAAATGGTTCAAACTTGAAGCTCAGGCTTCACTTGATGTTTTTAACAACGCCAGCTCATTTCAGAGCCCACCCAACACTCTGTATGCTTGTACTTACTAGTTATGGATTGGATGATTGCCAGTGAGCAGGACTCATAACTTGGCAGTACATTTTCCAATTGTGAAATCAGGTTTTGCATATGTATAACTGCATACTTTTCAGTCTGGTTCTGTGTACAGTAGAATACATACTTTTCAGTCTGGTTCTGTGTACAGTAGAATACATACTTTTCAGTCTGGTTCTGTGTACAGTAGAATACATACTTTTCAGTCTGGTTCTGTGTACAGTAGAATACATACTTGTTTCAAACAGCTCATTTTCAGTTTAAATATTGTAAATGTGAACTTTGAAACCAACTCCTGTATTTGTTTCAAGTCAATGTCAATGGTCTTATTTCAAGTAATATGTAGTTGGCACACCTGTAGCCAGGTAAACGTGTGGTATAATTGTGATCATTGAAAAATGACATGAGAATAAATgatagttttttttctttctttatggAA
>TU63565
TTTAATGTACAGTACACGGAAATGTATTGTCATCCTACTTCTTGCCGGTCTAGATTTGATGAACCAGCCATTAGATTTATCGTTCAGGACTTTCTACAAATGTCACAGATACATTCAGAACTTTCGGCCAATTCCACACGAGCCCATACGACTTCAACTACAACCACTGATTTACCAAATATAATGATACATTCCTTCAAAACAAGATGGTTAAGTTGGCATTTGATAACGATAACTTGGACTGAATGCATACAGCTTCTACCTGCATATTCTAAGGGAACCCATGTTGAGATAGACAGATTAGCTAAGGACTGGACTACCTGACCTATACCGTTTACAGTATGGATCATCTAAGCTTTTCAAGCCAAGAATGTATCCCCATTCCAAAACAAAGGACCATTTGCAATTTCCTTTGCAATCATTTTAATTGCAAAGGATTATTTTATTCCAAGAGGCTATGAAGACTAGCTGTGATATGTTGCAGCCAACAATTACTCTGCAGTGCATCAGGAGTTCTTCCAATGCAATACTGGTAAACCCTCTTTCATAAGATTTTGCATATTTATGTTTACATAATCCTTTATTTTACACACAGTAGGTATTGTACAATGTTAATGTTTCTCAACAAAGCCTTAAACAGTTGCCAATTAGATTCATGTAACTTTGTTGTGGCAAGAAATTCGTTATGAGCTGTCTATGGTTCTCTGTTGCAGCTCAAAATGGTTCAAACTTGAAGCTCAGGCTTCACTTGATGTTTTTAACAACGCCAGCTCATTTCAGAGCCCACCCAACACTCTGTATGCTTGTACTTACTAGTTATGGATTGGATGATTGCCAGTGAGCAGGACTCATAACTTGGCAGTACATTTTCCAATTGTGAAATCAGGTTTTGCATATGTATAACTGCATACTTTTCAGTCTGGTTCTGTGTACAGTAGAATACATACTTTTCAGTCTGGTTCTGTGTACAGTAGAATACATACTTGTTTCAAACAGCTCATTTTCAGTTTAAATATTGTAAATGTGAACTTTGAAACCAACTCCTGTATTTGTTTCAAGTCAATGTCAATGGTCTTATTTCAAGTAATATGTAGTTGGCACACCTGTAGCCAGGTAAACGTGTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021604493.2 False 4631 mRNA 0.49 8 51992437 52100196
TU63565 True 1124 lncRNA 0.46 2 51992503 51993698

Neighbor

gene id symbol gene type direction distance location
LOC110524618 LOC106573092 coding downstream 105761 51850982 ~ 51886676 (-)
LOC110524599 NA coding downstream 317464 51601527 ~ 51674973 (-)
LOC110524590 ccnd1 coding downstream 500718 51479046 ~ 51491719 (-)
zgc:101566 LOC106573100 coding downstream 847692 51041431 ~ 51144745 (-)
LOC110532401 NA coding downstream 1001039 50897530 ~ 50991398 (-)
LOC118966705 LOC106573087 coding upstream 92426 52192622 ~ 52197205 (-)
LOC110524655 LOC106573085 coding upstream 106600 52206796 ~ 52321595 (-)
LOC110524680 LOC106573083 coding upstream 233699 52333895 ~ 52448300 (-)
LOC110532407 NA coding upstream 359061 52459257 ~ 52462122 (-)
LOC118964321 NA coding upstream 399143 52499339 ~ 52503763 (-)
G57114 NA non-coding downstream 103278 51888404 ~ 51889159 (-)
G57097 LOC106573091 non-coding downstream 143337 51848061 ~ 51849100 (-)
G57096 NA non-coding downstream 147415 51844485 ~ 51845022 (-)
G57056 LOC106573091 non-coding downstream 149222 51794340 ~ 51843215 (-)
G57263 NA non-coding upstream 12665 52112861 ~ 52113083 (-)
G57281 NA non-coding upstream 27630 52127826 ~ 52128078 (-)
G57284 NA non-coding upstream 33312 52133508 ~ 52133750 (-)
G57301 NA non-coding upstream 42656 52142852 ~ 52143091 (-)
G57589 LOC106573086 non-coding upstream 212210 52312406 ~ 52313295 (-)
G56764 NA other downstream 245217 51746617 ~ 51747220 (-)
G56372 NA other downstream 588094 51400727 ~ 51412569 (-)
LOC110524514 borcs5 other downstream 1200368 50777716 ~ 50792069 (-)
G55627 NA other downstream 1225006 50765363 ~ 50767431 (-)
G55408 NA other downstream 1580309 50411634 ~ 50412128 (-)
G57742 NA other upstream 395702 52495898 ~ 52496234 (-)
G58565 LOC106561659 other upstream 1039262 53139458 ~ 53140304 (-)
LOC110525078 LOC105021811 other upstream 1234528 53334724 ~ 53338484 (-)
G58718 LOC100194703 other upstream 1325768 53425964 ~ 53426316 (-)
G58842 NA other upstream 1488226 53588422 ~ 53588770 (-)

Expression


Co-expression Network