LOC118966705 (LOC106573087)


Basic Information

Item Value
gene id LOC118966705
gene name LOC106573087
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 52192622 ~ 52197205 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036989650.1
GGGACGTCGACATCGATGGGACGTAGGCGCGGCAAACGTTGACATCGCATTTTCACCTGAAGCGCAACGTTCCTATTGCCTAGGCTGTTTTACATTGGGATTTTGAGTTTACGCACCGTCTGTATAGCAACCGTCTGCAAATCCATCAGTTCACTCTACACCTGGCCAAACGTCTACTAACTTTTTTATATTGCCACTGCAGAGAGGCTGTATATGAAACTGATCAACCGGACTCTGGACCAGCGAGGAAGATAAATCTTTCTCTGCCGCGCCAACTGACCAATTTTTTGCAAGGAGGACGGAGAAAGTAGCGGAGAGGTTTTGAAACCAAGCAAGATGGATAATGGTTTGTGTATGGTAAACGACGACTCGAACTTTGACCACAGAGATGTGGGTGTCTGTAAGAAAGGATGCAGACTTCTCTTGCAGACAGACATCGCCCAGGGAGACCATTGCTGTTTAGATGCGCTTCGCATGCTGAACGATGCGCTCCAGGAACGGAGCGTTACCTTGGAGCATGAAGCCCGGATGCAGCGGCTCAGGTGGGTCAGGAGAGAGCAGTCGCTACTGGCCCAGGTGTCATCCCTCCAAAGCGAGGCGCAGCTGACTGCTCTGAGGTACCAGCGAAAGTTGCACCAATACATGCtgaacatcaacaacatagccaAACAGGTTATTGGATATTACAAGAGTGACTCGGGAGCTTCTGGAGTCTGCCTGTCCCAGCTATCTGAACAAGGTCCAACTGATGCACTGGACGGACTACAGGACCAGGAGGAGCATGGCCTGGTACCAGAGACGAGTGACCCTGATGTCAGGTACTCTGAGGCCGAGCGCCCTCCGCCCAATGACTGGAGCAACCACACCATTATACCACTCGCTCGAACAGCAAGGGAGACCTGTGCGCTCTTCACACCGTAA

Function

NR:

description
PDZ domain-containing RING finger protein 4-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036989650.1 True 921 mRNA 0.52 3 52192622 52197205

Neighbor

gene id symbol gene type direction distance location
LOC110524646 LOC106573087 coding downstream 92426 51992437 ~ 52100196 (-)
LOC110524618 LOC106573092 coding downstream 305946 51850982 ~ 51886676 (-)
LOC110524599 NA coding downstream 517649 51601527 ~ 51674973 (-)
LOC110524590 ccnd1 coding downstream 700903 51479046 ~ 51491719 (-)
zgc:101566 LOC106573100 coding downstream 1047877 51041431 ~ 51144745 (-)
LOC110524655 LOC106573085 coding upstream 9591 52206796 ~ 52321595 (-)
LOC110524680 LOC106573083 coding upstream 136690 52333895 ~ 52448300 (-)
LOC110532407 NA coding upstream 262052 52459257 ~ 52462122 (-)
LOC118964321 NA coding upstream 302134 52499339 ~ 52503763 (-)
LOC110524730 LOC106573078 coding upstream 367817 52565022 ~ 52621034 (-)
G57301 NA non-coding downstream 49531 52142852 ~ 52143091 (-)
G57284 NA non-coding downstream 58872 52133508 ~ 52133750 (-)
G57281 NA non-coding downstream 64544 52127826 ~ 52128078 (-)
G57263 NA non-coding downstream 79539 52112861 ~ 52113083 (-)
G57589 LOC106573086 non-coding upstream 115201 52312406 ~ 52313295 (-)
G57674 NA non-coding upstream 252632 52449837 ~ 52450058 (-)
G57696 NA non-coding upstream 269104 52466309 ~ 52466668 (-)
G57698 NA non-coding upstream 270460 52467665 ~ 52467906 (-)
G57715 NA non-coding upstream 281871 52479076 ~ 52479302 (-)
G56764 NA other downstream 445402 51746617 ~ 51747220 (-)
G56372 NA other downstream 788279 51400727 ~ 51412569 (-)
LOC110524514 borcs5 other downstream 1400553 50777716 ~ 50792069 (-)
G55627 NA other downstream 1425191 50765363 ~ 50767431 (-)
G55408 NA other downstream 1780494 50411634 ~ 50412128 (-)
G57742 NA other upstream 298693 52495898 ~ 52496234 (-)
G58565 LOC106561659 other upstream 942253 53139458 ~ 53140304 (-)
LOC110525078 LOC105021811 other upstream 1137519 53334724 ~ 53338484 (-)
G58718 LOC100194703 other upstream 1228759 53425964 ~ 53426316 (-)
G58842 NA other upstream 1391217 53588422 ~ 53588770 (-)

Expression


Co-expression Network