LOC110524688 (LOC106573082)


Basic Information

Item Value
gene id LOC110524688
gene name LOC106573082
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 52520506 ~ 52524718 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021604551.2
ggtcctcactttcttccaccaacagccgttacaagAACCTAAAGGGGTTAtttggttgtccccataggagaaccctttgaagaaccctttttggttccaagtaaaaccctattgggttccatgtagaaccctttaacCGGAAAATACCAGATACCTTTCTCCATCCACtcattgtaaaatatatatttttttaaaattaggATGCATATAGTGTTCttcatactgtagctactgtcTTTGGTTTCAGTTTAATTCCGTTTTCGATTTCCACTCTTTTCCCCCTTCGCATCCAGTAGTTGGCAGCAATAAACCTTTTCCGGTGTAGTCCGCCCTAAACACCACCAAAGAGGAAGGTGCGCAATGGAGCATCAAAATATCAAAAATAGTGCGACTTAACTGAAGTTATCCTTCGCAATTCAGCAAAAAATAAGCCACCAGCACCATGGCAACTTCACAGTCAGCCTTCGCATTTGCAGTTTGTATCCTGATAATAACAGAGTTAATACTGGCCAAAAAGGACTACTATGACATATTGGGAGTGCCGAAAGATGCCAACGAGCGTCAGATAAAGAAGGCTTTTCACAAGCTGGCTATGAAGTATCACCCAGACAAGAACAAGAGCCCAGATGCTGAGACAAAGTTCAGAGACATTGCTGAGGCATATGAAACATTGTCAGACGAGAAGAGGAGACAAGAGTATGACCAGTTTGGACATGGCACATTCCATAATGATGGAACCAAAGGCAGAAACGGTCCAAACGTCCACCAGCCCTTCAACTTTGGCGACATGTTCAAGGACTTTGATATTTACAGCCAGAACCGACACGCCCTTCACAAGAGGCACTTCGAGGATCACTTCCGGGCCCACCAGGAGGCCCATCACAGCAGACACAAGAGACACTCCCAGGGGGCTTTTGGAGCAGCGGGTGGTGGTGGCTTTGACGGCATGTTTAACGACATGAAGAAGTTTACTTTTCACAGGGACACTACTAAGCAGACTGAGAGCAGGTTTCAGAGTACTACAGCGAAGCAACACTGCAGAACAGTGACACAACGCAGGGGGAACATGGTCACCACGTACACTGACTGCACTGGCTCCTGAGGACAGGGGCAAAGTCCGTATCCACATCACTTGGGTTGTGTTCATCAGGCATGAAATGGAAGAAAGCGGTTTGAGATGGGGAGGTACTATCTGAACCAGTTGTGGCTGATGGGAGGAGCTattggaggatgggctcattgtaatggctggaatggaattaatggaacggtatcaaacacatggaaaccacgtttgactccgttccttcattccattccagacattttttaaatgtttttttattttaccttttatttaactaagcaagtcagttaagaataaattcttatttacaatgactgcctcccctaacccggaagacgctgggccaattgtgcgccgccctatggtactcccgatcacagccggttgtgatacagcccgggatcgaaccagggactgcagtgacgcctctagcactgagatgcagtgctttagaccgctgtaCCACTTGggagccattacaatgagcccgtcctcctatagctccccccACTGATCTgcacttgtccaataagaaaaggttgtttttgttttccattgcacaacattttgaaatgtttatctatggtgtgccctaatgaacatgaccctgcaaCAGCTTGCAACTGAGTAGGCATCTGGTGGGAGCTAGGTGTTTTTGTTGATGCTGTGACCTAAGTGCTGGTCATTTCTACTTTTTTGAGTTAAAGTAAGTAGCTAATGAAAACACTTGAGCAGACACTGTTTGTAAAAcaatcaataataataattcaagcACTGAACAGATTTTGAAGCTTATTGCTCACAGTTTACATCAAGTATAGTTAAGAATTTGAATGTGGTAGAGGAGAATATTTTTGGGAATAGTGTTAAGAAATTGTTTTAAAAATCTATTTGACCAACGTTTCACAAACTCGGtgaacgttttggtttttgccctaacacttcACAGctaattcaaatgatcaaagctggaTGATTAGttgataatttgaatcagctgtgtagtggtagggcaaaaaccaaaacatgtacCCCTTGGGGTCCCGGTGGACCAAGTTTGGAAAACCCTGCATTAGACTATCATTCTATGTACAGTTTATTTAGTACCCCTCTTGAATATTTACAAAGGCTCTTACTCGTTAGCCAAAAGTGTTGAGTAACTACTACCACTCCCAGACATTTTCTGTGTGCATTTAGTAGTTTGTATAGCCTACACAACTTCATTGTGTGACTCCAGCAACCTTTAGTTGGAACAAAACGGTGTGGACAATGACGCTGGGACAGGTTTGCTTTTGGTTGATAGATGGAGAAAAATGTCAGATATGTCCCCTCAGTTTGAACATTTAGTGAAATTATAATGCAGCATTTTTATGTACTGCTTTGTAAAGGGATGCTCACCACTTGTAGTTGAAATTGGGTCAAACTATTCAGCTCTACAAGAACTCGTatggccatggaaacacattggaAACTACTTGCAGTTCACGTAGCCAGCTGTTTCTGTTGCTGCTGTGTGCTGGCCATTGCTTCTTTGTCAACATCTTTCCTCCTGTCTGCATGGACCACTTGAATTCATCAGCTCACGTTGGTGTAAATTACAATCCAGTGTTGTTCATCCAACAGCTCATAAACATCTGTTACCTGTTTCCCTAGACTGTAGACgagaaatgtatgttttgttatgTAAATGTGTAAAGCCAGCACTCTTTTTTCCATCTTTTTTTTTGCCACTGTTTGCTGGCTTTATCGTTGTGATACCTTGACCCATATAAGCACTTTCATTATTTTAATCCTTTGGATAAAATGTTTTACTTTGACAGAAAAATTGTGTATCGTCCCTGTAAATAAAGTGTTAAATAAAATATCAGAAAATAAA

Function

NR:

description
dnaJ homolog subfamily B member 9-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021604551.2 True 2963 mRNA 0.42 3 52520506 52524718

Neighbor

gene id symbol gene type direction distance location
LOC110524629 LOC106573088 coding upstream 602522 51900323 ~ 51917984 (+)
LOC110524623 LOC106573089 coding upstream 625589 51888400 ~ 51894917 (+)
LOC110524604 LOC106573091 coding upstream 668731 51801997 ~ 51852291 (+)
trnap-agg NA coding upstream 889603 51630832 ~ 51630903 (+)
trnap-ugg-2 NA coding upstream 890267 51630168 ~ 51630239 (+)
LOC110524698 LOC106573080 coding downstream 4060 52528778 ~ 52551209 (+)
LOC110524804 NA coding downstream 173962 52698680 ~ 52702647 (+)
LOC110524813 LOC106573076 coding downstream 182832 52707550 ~ 52722838 (+)
LOC110524844 LOC106573071 coding downstream 358152 52882870 ~ 52889860 (+)
LOC110524847 LOC106561671 coding downstream 379926 52904644 ~ 52925473 (+)
G57740 NA non-coding upstream 25124 52495138 ~ 52495382 (+)
G57738 NA non-coding upstream 25536 52494434 ~ 52494970 (+)
G57736 NA non-coding upstream 27531 52492738 ~ 52492975 (+)
G57729 LOC100194703 non-coding upstream 31432 52488690 ~ 52489074 (+)
G57728 NA non-coding upstream 32640 52487666 ~ 52487866 (+)
G57769 NA non-coding downstream 28582 52553300 ~ 52555377 (+)
G57758 NA non-coding downstream 40304 52565022 ~ 52592365 (+)
G57802 NA non-coding downstream 99671 52624389 ~ 52631323 (+)
G57811 NA non-coding downstream 219638 52744356 ~ 52748628 (+)
LOC110524575 fgf3 other upstream 1069571 51449353 ~ 51451460 (+)
LOC118964841 NA other upstream 2436510 50037523 ~ 50184257 (+)
G53181 NA other upstream 3626594 48893497 ~ 48893912 (+)
G52324 NA other upstream 4137249 48380542 ~ 48383257 (+)
G52080 NA other upstream 4495548 48006674 ~ 48024958 (+)
LOC118936380 LOC106581842 other downstream 1141497 53632830 ~ 53705421 (+)
G59031 NA other downstream 1463422 53988140 ~ 53988597 (+)
LOC110525327 LOC106573036 other downstream 1520131 54044813 ~ 54089850 (+)
G59963 NA other downstream 2196470 54721188 ~ 54721463 (+)
G61202 LOC106573044 other downstream 3380790 55905508 ~ 55923376 (+)

Expression


Co-expression Network