LOC110524780 (LOC106573150)


Basic Information

Item Value
gene id LOC110524780
gene name LOC106573150
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 52644949 ~ 52654488 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021604705.2
ACTCGGACAGAGAGCAGTCTATTTTAGTGAGCCATTCACACAGGGGTTATAAACTATAAATCTGAATGATATTTCCCCTATGCGCTCTCAGCTACTCTCCCACCCTaaactccctcactctctccctcagacTTTTCTACACCTTAAAGGGCTAAGACAATAAGGGAAACATGGCGGACGCGCCCAAACCAAAAGAAAAGTCCAAGATCTCCTCAGCCCGACGGTTGGggttgaagATCAGATTGCTGACAGTAGCTGGCCAGATGCTAGAGGTTGAGacggaggagaagaagagagaaagagaagaagctCTCGCTGAGAGAGTCCCTCCTCTCAAGCTTTCTGGCTTGTCTGTGGATGAGCTCATGGATTTGTGCAAAGATCTGCACCGTAAGATCGACGTGGTAGATGAGGAGCGATACGACGTGGGACTGAAAGTAACCAAAACTGACAAGGAGTGCCATGAGTTGGGTCTGAAGATCATTGAGCTGCAGAGCAAGTTCAAGAAGCCAAGCCTGAAGAGGGTGAAGATCTCAGCTGAGATGATGCTCAGTGTTCTGCTGGGCTCCAAGCACAAAGAGACAATCGACTTCAAGTCCAACCTCAAGACAGTCAAGAAAGCAGAGGAGAAGAAAGAGGAGGTCACCGACTGGCGTCAAAATGTGGATGCCATGTCAGGCATGGAGGGCAGAAAGAAGATGTTTGATGCTTGATAAGgtggactccaatcaagttg
>XM_021604701.2
CTCGGACAGAGAGCAGTCTATTTTAGTGAGCCATTCACACAGGGGTTATAAACTATAAATCTGAATGATATTTCCCCTATGCGCTCTCAGCTACTCTCCCACCCTaaactccctcactctctccctcagacTTTTCTACACCTTAAAGGGCTAAGACAATAAGGGAAACATGGCGGACGCGCCCAAACCAAAAGAAAAGTCCAAGATCTCCTCAGCCCGACGGTTGGggttgaagATCAGATTGCTGACAGTAGCTGGCCAGATGCTAGAGGTTGAGacggaggagaagaagagagaaagagaagaagctCTCGCTGAGAGAGTCCCTCCTCTCAAGCTTTCTGGCTTGTCTGTGGATGAGCTCATGGATTTGTGCAAAGATCTGCACCGTAAGATCGACGTGGTAGATGAGGAGCGATACGACGTGGGACTGAAAGTAACCAAAACTGACAAGGAGTGCCATGAGTTGGGTCTGAAGATCATTGAGCTGCAGAGCAAGTTCAAGAAGCCAAGCCTGAAGAGGGTGAAGATCTCAGCTGAGATGATGCTCAGTGTTCTGCTGGGCTCCAAGCACAAAGAGACAATCGACTTCAAGTCCAACCTCAAGACAGTCAAGAAAGCAGAGGAGAAGAAAGAGGAGGTCACCGACTGGCGTCAAAATGTGGATGCCATGTCAGGCATGGAGGGCAGAAAGAAGATGTTTGATGCTTGATAAGATTAGTGATGATTATCAAGGAAGGCTTTTCTGATTGGAAATGAAAGAAGTAGAAAAGGAGAGGACAACTGAAGGTATTATAACTGTAAGAGATAACTGAGTGAACACATGGAGAAGAAAGAAAAAGTTATTGaatatatttgttattttttgttacatGAAATCAAAATGTTAATTTAAATAACTATATGAGACTGTTGAAGCAAATATAAATAGTTGAAATACGTTTTTATTAAGTATTAATACAATATATATTGTATCTGAGCAAATGCATGTCTTTATTTGCAACACCTGTTTGCAGAAGTTACaagacaataaaaaaaaatggtttga
>XM_021604694.2
CTCGGACAGAGAGCAGTCTATTTTAGTGAGCCATTCACACAGGGGTTATAAACTATAAATCTGAATGATATTTCCCCTATGCGCTCTCAGCTACTCTCCCACCCTaaactccctcactctctccctcagacTTTTCTACACCTTAAAGGGCTAAGACAATAAGGGAAACATGGCGGACGCGCCCAAACCAAAAGAAAAGTCCAAGATCTCCTCAGCCCGACGGTTGGggttgaagATCAGATTGCTGACAGTAGCTGGCCAGATGCTAGAGGTTGAGacggaggagaagaagagagaaagagaagaagctCTCGCTGAGAGAGTCCCTCCTCTCAAGCTTTCTGGCTTGTCTGTGGATGAGCTCATGGATTTGTGCAAAGATCTGCACCGTAAGATCGACGTGGTAGATGAGGAGCGATACGACGTGGGACTGAAAGTAACCAAAACTGACAAGGAGTGCCATGAGTTGGGTCTGAAGATCATTGAGCTGCAGAGCAAGTTCAAGAAGCCAAGCCTGAAGAGGGTGAAGATCTCAGCTGAGATGATGCTCAGTGTTCTGCTGGGCTCCAAGCACAAAGAGACAATCGACTTCAAGTCCAACCTCAAGACAGTCAAGAAAGCAGAGGAGAAGAAAGAGGAGGTCACCGACTGGCGTCAAAATGTGGATGCCATGTCAGGCATGGAGGGCAGAAAGAAGATGTTTGATGCTTGATAAGGTACACAAAA

Function

NR:

description
troponin I, slow skeletal muscle-like

GO:

id name namespace
GO:0005861 troponin complex cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021604705.2 False 736 mRNA 0.49 8 52644949 52654488
XM_021604701.2 False 1048 mRNA 0.42 8 52645982 52654487
XM_021604694.2 True 726 mRNA 0.48 7 52646415 52654487

Neighbor

gene id symbol gene type direction distance location
LOC110524766 pmge coding downstream 8251 52624357 ~ 52636698 (-)
LOC110524730 LOC106573078 coding downstream 23915 52565022 ~ 52621034 (-)
LOC118964321 NA coding downstream 141186 52499339 ~ 52503763 (-)
LOC110532407 NA coding downstream 182827 52459257 ~ 52462122 (-)
LOC110524680 LOC106573083 coding downstream 196649 52333895 ~ 52448300 (-)
LOC118964326 NA coding upstream 27401 52681889 ~ 52682613 (-)
LOC110524838 LOC106573075 coding upstream 89829 52744317 ~ 52753305 (-)
LOC110524843 LOC106573072 coding upstream 111994 52766482 ~ 52769164 (-)
LOC110532414 LOC106573136 coding upstream 156361 52810849 ~ 52815285 (-)
LOC110521107 LOC106573149 coding upstream 161673 52816161 ~ 52818942 (-)
G57949 NA non-coding downstream 93741 52546065 ~ 52551208 (-)
G57950 LOC106573080 non-coding downstream 95720 52547739 ~ 52549229 (-)
G57917 LOC106573080 non-coding downstream 104892 52538346 ~ 52540057 (-)
G57741 NA non-coding downstream 149483 52495173 ~ 52495466 (-)
G57730 NA non-coding downstream 160722 52483952 ~ 52484227 (-)
G58040 NA non-coding upstream 49349 52703837 ~ 52755442 (-)
G58010 NA non-coding upstream 66584 52721072 ~ 52722815 (-)
G58050 NA non-coding upstream 69274 52723762 ~ 52724121 (-)
G58059 NA non-coding upstream 79600 52734088 ~ 52739028 (-)
G57742 NA other downstream 148715 52495898 ~ 52496234 (-)
G56764 NA other downstream 897729 51746617 ~ 51747220 (-)
G56372 NA other downstream 1240606 51400727 ~ 51412569 (-)
LOC110524514 borcs5 other downstream 1852880 50777716 ~ 50792069 (-)
G55627 NA other downstream 1877518 50765363 ~ 50767431 (-)
G58565 LOC106561659 other upstream 484970 53139458 ~ 53140304 (-)
LOC110525078 LOC105021811 other upstream 680236 53334724 ~ 53338484 (-)
G58718 LOC100194703 other upstream 771476 53425964 ~ 53426316 (-)
G58842 NA other upstream 933934 53588422 ~ 53588770 (-)
LOC110525178 LOC106581842 other upstream 1107467 53761612 ~ 53774544 (-)

Expression


Co-expression Network