LOC110524804


Basic Information

Item Value
gene id LOC110524804
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 52698680 ~ 52702647 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005052055.1
TCCTTGGGTCTACAGAGCGACCTGCTATTAGCTGTGCCCATCCCTGAGGAGCATGCAGCAGCCGGCCAACCGATTGAGGACGCTATACAGGCTGCACTGGCAGAGGCCAATGCTAAAGGCATTAGAAGAAGAGATGTGACGCCCCCTTCATCCTTCAAAAGGTCAACGAATTTGCCCAGAGGAAAGTCCGTCCTAGCTAGTTACCTTCTCAGATCAATACCGTGACACAAGAAActatggtagagggagagaatcaATCTCAGTGTAAGGTTAGAAATTGTGGGAAAAAAAGGTAATGAGCTGACATATTGTtgttcttaaaaaatatatatatattatatatatttctcCATATAACTTTATATGAGGTCCCTTAACCTCATATTCCCAAAGATATCGCTCAACATGCATAATAGTGTCAGGTTGGGCAGGCAGATAGCCTGTGCACTGTCTGAACAAATGCAGAAGAAGAGGACTATTCCTGGTCTTCACgtaaaagaggaagagaaagattcTGACTATCAAAAATTGTGAGTACTAGTCATATGTTCCTCATCAAATGCAGGTGAACCCCTCTTATCTTGTCTTATAGAGTGCACCACTTTAGTTTTAGCATGATGGACAGTGGGTGACATGCTTGCTGTACAATACCACtgtggcttgtttaaaaaaaatcgtAGGTGGTGTGAACGTGGATTTTATTGCAATGGGGAACACAGAGTAGCTTGTGGTACATAGGCTTACAtcaaacacactgtactgtatactgtaggctTATGTCTATAACATTCAGATTATGTTAATATAATGGGTTTATTTGATTGAGACATAACTACTTTTATATTTCACATTTGGACAGACGAATACTGGAATTGTTGGCCTTGTTGGCCCTGGTGGAGTAGGAAGGAACCTTGCTGGTTCGTTTTAATTTCCTGATCTGCAAAACTTCAACTGGTTATGAGGATATGGTGTACAAATATTACATTGAGTTAAGTTCTTTTGGGATGTTTTTCCCAACAGACTCTCTGAACAGAATTGGACAAAGACCTCTGTTCATCTCAGCCATTGGAACTGACTCTCACAGTGATGCTGTACTGAACTACTCTCAGCACATGTGCACCAGAGGCGTCGCCAGGCTTCAAGAGCAGAGGACCGCAACTTATTGTGCCGGGATGACTGAGAACGGTGACCTGAGTCTCGGATTGGGCGACAGGCATAACAGCCAGCAAATCACAGAACAGTATtCTTGCAGGTGGGATAACGGCTGGGATGTTCCCGGGCAGAGACACTCAAAGCTGTGTTAAGATGGGGCTCCTGGCAACATGCCTGTCACTGCCCTCCCCACACCCCACCTGCCCAACTCTGACCACAGACTATATTGAACCAAACAATGTCCAACCACCCAAACCCTGGCCTTAACCCACCCTTATGTGGATGGAGGAATGAGGAACAACTATCTTTTATTATGTTGTTTGACCATCAAAATAACTTTTCAATGATTAGTTTAAAAAACTGTCTACCACAGTGACAGAATGGTGATCATTTgcatacattttaaataaaatacTTTTAAATTCTTCTA
>XR_005052056.1
TCCTTGGGTCTACAGAGCGACCTGCTATTAGCTGTGCCCATCCCTGAGGAGCATGCAGCAGCCGGCCAACCGATTGAGGACGCTATACAGGCTGCACTGGCAGAGGCCAATGCTAAAGGCATTAGAAGAAGAGATGTGACGCCCCCTTCATCCTTCAAAAGGTCAACGAATTTGCCCAGAGGAAAGTCCGTCCTAGCTAGTTACCTTCTCAGATCAATACCGTGACACAAGAAActatggtagagggagagaatcaATCTCAGTGTAAGGTTAGAAATTGTGGGAAAAAAAGGTAATGAGCTGACATATTGTtgttcttaaaaaatatatatatattatatatatttctcCATATAACTTTATATGAGGTCCCTTAACCTCATATTCCCAAAGATATCGCTCAACATGCATAATAGTGTCAGGTTGGGCAGGCAGATAGCCTGTGCACTGTCTGAACAAATGCAGAAGAAGAGGACTATTCCTGGTCTTCACgtaaaagaggaagagaaagattcTGACTATCAAAAATTACTCTCTGAACAGAATTGGACAAAGACCTCTGTTCATCTCAGCCATTGGAACTGACTCTCACAGTGATGCTGTACTGAACTACTCTCAGCACATGTGCACCAGAGGCGTCGCCAGGCTTCAAGAGCAGAGGACCGCAACTTATTGTGCCGGGATGACTGAGAACGGTGACCTGAGTCTCGGATTGGGCGACAGGCATAACAGCCAGCAAATCACAGAACAGTATtCTTGCAGGTGGGATAACGGCTGGGATGTTCCCGGGCAGAGACACTCAAAGCTGTGTTAAGATGGGGCTCCTGGCAACATGCCTGTCACTGCCCTCCCCACACCCCACCTGCCCAACTCTGACCACAGACTATATTGAACCAAACAATGTCCAACCACCCAAACCCTGGCCTTAACCCACCCTTATGTGGATGGAGGAATGAGGAACAACTATCTTTTATTATGTTGTTTGACCATCAAAATAACTTTTCAATGATTAGTTTAAAAAACTGTCTACCACAGTGACAGAATGGTGATCATTTgcatacattttaaataaaatacTTTTAAATTCTTCTA
>TU64296
TCCTTGGGTCTACAGAGCGACCTGCTATTAGCTGTGCCCATCCCTGAGGAGCATGCAGCAGCCGGCCAACCGATTGAGGACGCTATACAGGCTGCACTGGCAGAGGCCAATGCTAAAGGCATTAGAAGAAGAGATGTGACGCCCCCTTCATCCTTCAAAAGGTCAACGAATTTGCCCAGAGGAAAGTCCGTCCTAGCTAATATCGCTCAACATGCATAATAGTGTCAGGTTGGGCAGGCAGATAGCCTGTGCACTGTCTGAACAAATGCAGAAGAAGAGGACTATTCCTGGTCTTCACgtaaaagaggaagagaaagattcTGACTATCAAAAATTACTCTCTGAACAGAATTGGACAAAGACCTCTGTTCATCTCAGCCATTGGAACTGACTCTCACAGTGATGCTGTACTGAACTACTCTCAGCACATGTGCACCAGAGGCGTCGCCAGGCTTCAAGAGCAGAGGACCGCAACTTATTGTGCCGGGATGACTGAGAACGGTGACCTGAGTCTCGGATTGGGCGACAGGCATAACAGCCAGCAAATCACAGAACAGTATtCTTGCAGGTGGGATAACGGCTGGGATGTTCCCGGGCAGAGACACTCAAAGCTGTGTTAAGATGGGGCTCCTGGCAACATGCCTGTCACTGCCCTCCCCACACCCCACCTGCCCAACTCTGACCACAGACTATATTGAACCAAACAATGTCCAACCACCCAAACCCTGGCCTTAACCCACCCTTATGTGGATGGAGGAATGAGGAACAACTATCTTTTATTATGTTGTTTGACCATCAAAATAACTTTTCAATGATTAGTTTAAAAAACTGTCTACCACAGTGACAGAATGGTGATCATTTgc
>TU64295
GTGACATGCTTGCTGTACAATACCACtgtggcttgtttaaaaaaaatcgtAGGTGGTGTGAACGTGGATTTTATTGCAATGGGGAACACAGAGTAGCTTGTGGTACATAGGCTTACAtcaaacacactgtactgtatactgtaggctTATGTCTATAACATTCAGATTATGTTAATATAATGGGTTTATTTGATTGAGACATAACTACTTTTATATTTCACATTTGGACAGACGAATACTGGAATTGTTGGCCTTGTTGGCCCTGGTGGAGTAGGAAGGAACCTTGCTGACTCTCTGAACAGAATTGGACAAAGACCTCTGTTCATCTCAGCCATTGGAACTGACTCTCACAGTGATGCTGTACTGAACTACTCTCAGCACATGTGCACCAGAGGCGTCGCCAGGCTTCAAGAGCAGAGGACCGCAACTTATTGTGCCGGGATGACTGAGAACGGTGACCTGAGTCTCGGATTGGGCGACAGGCATAACAGCCAGCAAATCACAGAACAGTATtCTTGCAGGTGGGATAACGGCTGGGATGTTCCCGGGCAGAGACACTCAAAGCTGTGTTAAGATGGGGCTCCTGGCAACATGCCTGTCACTGCCCTCCCCACACCCCACCTGCCCAACTCTGACCACAGACTATATTGAACCAAACAATGTCCAACCACCCAAACCCTGGCCTTAACCCACCCTTATGTGGATGGAGGAATGAGGAACAACTATCTTTTATTATGTTGTTTGACCATCAAAATAACTTTTCAATGATTAGTTTAAAAAACTGTCTACCACAGTGACAGAATGGTGATCATTTgc

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005052055.1 False 1582 mRNA 0.43 4 52698680 52702647
XR_005052056.1 False 1092 mRNA 0.44 5 52698680 52702647
TU64296 False 863 lncRNA 0.43 6 52698680 52702612
TU64295 True 816 lncRNA 0.45 4 52699724 52702612

Neighbor

gene id symbol gene type direction distance location
LOC110524698 LOC106573080 coding upstream 147471 52528778 ~ 52551209 (+)
LOC110524688 LOC106573082 coding upstream 173962 52520506 ~ 52524718 (+)
LOC110524629 LOC106573088 coding upstream 780696 51900323 ~ 51917984 (+)
LOC110524623 LOC106573089 coding upstream 803763 51888400 ~ 51894917 (+)
LOC110524604 LOC106573091 coding upstream 846905 51801997 ~ 51852291 (+)
LOC110524813 LOC106573076 coding downstream 4903 52707550 ~ 52722838 (+)
LOC110524844 LOC106573071 coding downstream 180223 52882870 ~ 52889860 (+)
LOC110524847 LOC106561671 coding downstream 201997 52904644 ~ 52925473 (+)
LOC110524881 LOC106573069 coding downstream 222988 52925635 ~ 52936875 (+)
LOC110524905 s35b4 coding downstream 253156 52955803 ~ 52962832 (+)
G57802 NA non-coding upstream 67357 52624389 ~ 52631323 (+)
G57758 NA non-coding upstream 106315 52565022 ~ 52592365 (+)
G57769 NA non-coding upstream 143303 52553300 ~ 52555377 (+)
G57740 NA non-coding upstream 203298 52495138 ~ 52495382 (+)
G57738 NA non-coding upstream 203710 52494434 ~ 52494970 (+)
G57811 NA non-coding downstream 41709 52744356 ~ 52748628 (+)
G58134 NA non-coding downstream 159925 52862572 ~ 52862774 (+)
G58205 NA non-coding downstream 240238 52942885 ~ 52943257 (+)
LOC118964862 NA non-coding downstream 263168 52965815 ~ 52988549 (+)
G58229 NA non-coding downstream 293979 52996626 ~ 52996842 (+)
LOC110524575 fgf3 other upstream 1247745 51449353 ~ 51451460 (+)
LOC118964841 NA other upstream 2614684 50037523 ~ 50184257 (+)
G53181 NA other upstream 3804768 48893497 ~ 48893912 (+)
G52324 NA other upstream 4315423 48380542 ~ 48383257 (+)
G52080 NA other upstream 4673722 48006674 ~ 48024958 (+)
LOC118936380 LOC106581842 other downstream 963568 53632830 ~ 53705421 (+)
G59031 NA other downstream 1285493 53988140 ~ 53988597 (+)
LOC110525327 LOC106573036 other downstream 1342202 54044813 ~ 54089850 (+)
G59963 NA other downstream 2018541 54721188 ~ 54721463 (+)
G61202 LOC106573044 other downstream 3202861 55905508 ~ 55923376 (+)

Expression


Co-expression Network