Fish Transcriptome and Expression Database

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model fish

XLOC_019765 (BX649250.1)

Basic Information

Item	Value
gene id	XLOC_019765
gene name	BX649250.1
gene type	non-coding
species	zebrafish (Danio rerio)
category of species	model fish

Chromosome Information

Item	Value
chromosome id	NC_007132.7
NCBI id	CM002905.2
chromosome length	45934066
location	37072951 ~ 37073080 (-)
genome version	GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00038902
GTGGTTAACCAACTGTTGCTGCAAGACTGAGCAGTGTTTTGCAGTATTCAATACCACACAGAGCAAGTTTGGTTCCTGCCGACAGGGCCTGTCAAGATATTGGGTTCTCTGTGCGATGGTTCCATACATA

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id

ENSDARG00000085249

RNA

RNA id	representative	length	rna type	GC content	exon number	start site	end site
TCONS_00038902	True	130	scaRNA	0.47	1	37072951	37073080

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.

Neighbor

gene id	symbol	gene type	direction	distance	location
XLOC_019763	zgc:77151	coding	downstream	45699	36985209 ~ 37027252 (-)
XLOC_019762	dbn1	coding	downstream	100824	36801620 ~ 36972127 (-)
XLOC_019761	nop16	coding	downstream	453352	36612440 ~ 36619599 (-)
XLOC_019760	wwc1	coding	downstream	501147	36465939 ~ 36571804 (-)
XLOC_019759	cnot8	coding	downstream	619357	36442085 ~ 36453594 (-)
XLOC_019766	fgfr4	coding	upstream	110044	37183124 ~ 37194839 (-)
XLOC_019767	fam114a2	coding	upstream	350637	37423717 ~ 37435162 (-)
XLOC_019768	NA	coding	upstream	505666	37578746 ~ 37582114 (-)
XLOC_019769	NA	coding	upstream	521271	37594351 ~ 37632708 (-)
XLOC_019770	ndfip1l	coding	upstream	564599	37637679 ~ 37661570 (-)
XLOC_019757	NA	non-coding	downstream	1017544	36054484 ~ 36055407 (-)
XLOC_019755	NA	non-coding	downstream	1422855	35645538 ~ 35650096 (-)
XLOC_019743	NA	non-coding	downstream	3426071	33637162 ~ 33646880 (-)
XLOC_019742	NA	non-coding	downstream	3594988	33465275 ~ 33477963 (-)
XLOC_019740	NA	non-coding	downstream	3926426	33145252 ~ 33146525 (-)
XLOC_019777	BX530030.1	non-coding	upstream	990117	38063197 ~ 38063314 (-)
XLOC_019779	NA	non-coding	upstream	1384203	38457283 ~ 38463146 (-)
XLOC_019782	NA	non-coding	upstream	1556228	38629308 ~ 38632907 (-)

Expression

Co-expression Network