LOC118964864


Basic Information

Item Value
gene id LOC118964864
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 53007483 ~ 53020119 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005052075.1
ATGTCTGTAAAGCACAGTTTCACTTTCCAAAGCAGAGGGAGCAAACATGCACTGAAAAGTCCACCAGCAGCTTGTAAGAACCCATAGGACTCCTCCAGTTCTTCCTCTGAGTATCCcatgcctctccttccagttcggAAGGCCTCATACTGTCCAACAACAAGAAAGAGGGGGGGCGGTGCACTGAGGGGTAAGCAGGTGGATTAAAAAGTTACCAAGTCGTCAAATATACTGACCCGTTCTTGCAGGGTGGTATTCTTTATCAAGAAAGCAGAGTTGTATCTGAAAGACTGCTTGGACTCCTCATACATGTACATGTTCTGCAGTGGAGGCAGAATACTGTTGTCGAAGGGCTCAGAACCTGGTAGTACAGGTAACAAAACACCTGGTGGTTGGAACAGGATGAATATTAAATAGTGACTTTACCGCAGGGTTGTAAATTGTTATGTTTTGTACCAACAGTTGCCATGCATTTGTAACTACCCATATTGATATATTATATAATTGTTTCGATTATATTCTAGGCTATTCTATACTAGGTGCCTTGCATTGGTAACTACCACATGTATGATTGAAAATACTATTACATTCTATTCTAGGTGTCACACATTTGTAACAACCATACTGATTCTATTCTGTTTTCAATTCTATTCTAGGTGTTATGCATCTGTAATAACCATATTGATTCTATTCCATTTTCAATTCTATTCTAGGTGTCATGCATCTGTAATAACCATATTGATTCTATTCCATTTTCAATTATATTCTAGGTGTCATGCATCTGTAATAACCATACTGATTCTATTCCATTTTCAATTATATTCTAGGTGTGTTATGCATTTGTAACAACCATATTGATTATATTTCGTCTTCAATTC
>TU65057
GTTTCACTTTCCAAAGCAGAGGGAGCAAACATGCACTGAAAAGTCCACCAGCAGCTTGGTAACTCTGAGTGTGTTCAGCTCATGATAAATGTAGGAGCTCTGATGGAGGCCCATGACTGCCACTTTGTCCC
>TU65058
GTTTCACTTTCCAAAGCAGAGGGAGCAAACATGCACTGAAAAGTCCACCAGCAGCTTGTAAGAACCCATAGGACTCCTCCAGTTCTTCCTCTGAGTATCCcatgcctctccttccagttcggAAGGCCTCATACTGTCCAACAACAAGAAAGAGGGTGGTATTCTTTATCAAGAAAGCAGAGTTGTATCTGAAAGACTGCTTGGACTCCTCATACATGTACATGTTCTGCAGTGGAGGCAGAATACTGTTGTCGAAGGGCTCAGAACCTGGTAGTACAGGTAACAAAACACCTGGTGGTTGGAACAGGATGAATATTAAATAGTGACTTTACCGCAGGGTTGTAAATTGTTATGTTTTGTACCAACAGTTGCCATGCATTTGTAACTACC

Function

NR:

description
uncharacterized protein LOC110524916

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005052075.1 False 878 mRNA 0.38 3 53009968 53020119
TU65057 False 131 lncRNA 0.36 2 53007483 53020103
TU65058 True 390 lncRNA 0.49 3 53010362 53020103

Neighbor

gene id symbol gene type direction distance location
LOC110524896 LOC106573068 coding downstream 54252 52943860 ~ 52955716 (-)
LOC110521107 LOC106573149 coding downstream 191026 52816161 ~ 52818942 (-)
LOC110532414 LOC106573136 coding downstream 194683 52810849 ~ 52815285 (-)
LOC110524843 LOC106573072 coding downstream 240804 52766482 ~ 52769164 (-)
LOC110524838 LOC106573075 coding downstream 256663 52744317 ~ 52753305 (-)
LOC110524937 LOC106573065 coding upstream 27621 53047740 ~ 53059946 (-)
LOC110524998 NA coding upstream 57539 53077658 ~ 53084723 (-)
ucmab LOC106573148 coding upstream 218216 53238335 ~ 53250903 (-)
LOC110525034 elk3 coding upstream 278244 53298363 ~ 53310125 (-)
LOC110525078 LOC105021811 coding upstream 316911 53334724 ~ 53338484 (-)
G58485 NA non-coding downstream 68504 52941223 ~ 52941464 (-)
G58479 NA non-coding downstream 83417 52926223 ~ 52926551 (-)
G58469 NA non-coding downstream 84495 52924832 ~ 52925473 (-)
G58475 LOC106573070 non-coding downstream 94286 52912660 ~ 52915682 (-)
G58458 LOC106573071 non-coding downstream 120175 52887539 ~ 52889793 (-)
G58518 NA non-coding upstream 8236 53028355 ~ 53028714 (-)
G58519 NA non-coding upstream 10459 53030578 ~ 53032021 (-)
G58523 NA non-coding upstream 27473 53047592 ~ 53047671 (-)
G58596 NA non-coding upstream 184663 53204782 ~ 53205315 (-)
G58659 NA non-coding upstream 275129 53295248 ~ 53296349 (-)
G57742 NA other downstream 513734 52495898 ~ 52496234 (-)
G56764 NA other downstream 1262748 51746617 ~ 51747220 (-)
G56372 NA other downstream 1605625 51400727 ~ 51412569 (-)
LOC110524514 borcs5 other downstream 2217899 50777716 ~ 50792069 (-)
G55627 NA other downstream 2242537 50765363 ~ 50767431 (-)
G58565 LOC106561659 other upstream 119339 53139458 ~ 53140304 (-)
G58718 LOC100194703 other upstream 405845 53425964 ~ 53426316 (-)
G58842 NA other upstream 568303 53588422 ~ 53588770 (-)
LOC110525178 LOC106581842 other upstream 741836 53761612 ~ 53774544 (-)

Expression


Co-expression Network