LOC110524937 (LOC106573065)


Basic Information

Item Value
gene id LOC110524937
gene name LOC106573065
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 53047740 ~ 53059946 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021604901.2
GACATGCGCAAAAACATCCGCCAACCCACAGAGAAGGGTACGTTCACGGGTATCATTACCTGCGCTGTGCAGCCGAACAACTTCTTAAACTATCAAACAGCCGTTCCATTTCCACTAACAAAAATTATATATTTAGGGATAAAGTACAGAAGGACACTCAGTATGGATGAAGAATACGATGTTATTGTTCTCGGGACCGGCCTAACGGAATGCATTCTGTCTGGCATTATGTCAGTGAAGGGGAAGAAGGTGCTTCATATGGACAGGAACTCTTACTATGGAGCAGAGAGTGCGTCCATCACGCCACTGGAAGATTTGTACAAGCGCTTCAGTCTTCCAGGCAAACCTCCAGAGTCCATGGGAAGAGGTCGGGACTGGAGCGTGGACCTCATCCCAAAGTTTCTGATGGCCAATGGTCAGCTTGTGCGAATGTTGCTGATCACTCAGGTGACCCGTTACCTGGACTTCAAGGTAATCGAGGGCAGCTATGTCTACAAGAAGGGAGCGATCTACAAAGTGCCGGTTACTGAGACCGAGGCACTGGCCTCCAGTTTGATGGGGATTTTCGAGAAGAGACGTTTCAGGAACTTCTTGATCTTCGTTGCCAACTATGATGTGAACGATCCCAAAACCATGGAGGGTGTCGACCCCAACAAGGCGACAATGCGTGACCTGTACAAGAAGTTCAGCCTGGGCCAGGATGTGATGGACTTCACTGGCCACGCCCTTGCGCTCTACAGGACAGACGACTACCTGGACCAGCCCTGCATCGACACCATCAACAGGATTAAGCTCTACAGTGAGTCTCTGGCCAGATACGGCAAGAGTCCttacctctaccctctctacgGCCTGGGGGAGCTGCCACAAGGCTTTGCTAGGTTGAGTGCTATCTATGGTGGGACCTACATGCTGAACAAGCCCATAGAGGAGATTGTTATGGAGAATGGAAAGGTAGTGGGGGTCAAgtcagagggagagaTAGCCCGCTGTAAGCAGCTGATCTGTGACCCCAGCTACATCATGGACAGAGTCAGCAAGGTCGGCCAAGTGGTCCGTATCATCTGTGTCATGAGCCACCCCATCAAGAACACCGGCGATGTCAACTCCTGTCAGATCATCATTCCTCAGATCCAGGTCAACAGGAAACATGACATCTACGTGTGTATGATCTCCTCGGCCCACAACGTGGCAGCGCAGGGCAAGTACATTGCCATCGCCAGCAGCGTAGTGGAGACCAATGACCCAGAGAAGGAGCTCAAACCGGCCCTGGATCTATTGGAGCCCATTGAACAGAAGTTTGTGAGCATCAGTGATCAGTATGCACCAACTGACATGGGAAAAGACAGCCAGATATTTATCTCCCGTACGTATGATGCAACAACCCACTTCGAGACCACCTGTGACGACATCAAGGACATTTACAAGCGCGTGATGGGCACGGAGTTTGACTTTGCCGAGATGGAGCGCACGAAGAATGACATCTTTGGAGACGCAGGTGATCAGTGATAGTGTCAGCATCATGTTAGTGTCCAGACAGCTCCAAATCTTAACAAACTGGTTTATAATCCAAATGCATTGTTGGAATCTGTATCTATGACCCTTTAAAACAATGGAATTATGTTtgtagaaaaaaaataaagaaaagtgtTTACTGGCATGCGGACAATTTTGGGTGGCTGCGTTTTATAATGAATTTGACAGTTGGTTAAGAACATGCAATGATCACATTGTGTACCATCATGAAGGTTTCTTCAAATTCTGACATGTGAATGTCGCCAAAGAGTTTTATTCAGGGGTTTATACGTAGTCTATAATTGTGatataaattgtatttttacaTAAGGTAATATTCTGTGttaaagtgaaataaataaatatttgatCTGTAATAGAGAAACAAA

Function

NR:

description
rab GDP dissociation inhibitor beta-like

GO:

id name namespace
GO:0015031 protein transport biological_process
GO:0050790 regulation of catalytic activity biological_process
GO:0005093 Rab GDP-dissociation inhibitor activity molecular_function

KEGG:

id description
K17255 GDI1_2; Rab GDP dissociation inhibitor

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021604901.2 True 1904 mRNA 0.47 11 53047740 53059946

Neighbor

gene id symbol gene type direction distance location
LOC118964864 NA coding downstream 27621 53007483 ~ 53020119 (-)
LOC110524896 LOC106573068 coding downstream 92024 52943860 ~ 52955716 (-)
LOC110521107 LOC106573149 coding downstream 228798 52816161 ~ 52818942 (-)
LOC110532414 LOC106573136 coding downstream 232455 52810849 ~ 52815285 (-)
LOC110524843 LOC106573072 coding downstream 278576 52766482 ~ 52769164 (-)
LOC110524998 NA coding upstream 17712 53077658 ~ 53084723 (-)
ucmab LOC106573148 coding upstream 178389 53238335 ~ 53250903 (-)
LOC110525034 elk3 coding upstream 238417 53298363 ~ 53310125 (-)
LOC110525078 LOC105021811 coding upstream 277084 53334724 ~ 53338484 (-)
LOC110525089 LOC106573055 coding upstream 313755 53373701 ~ 53384476 (-)
G58523 NA non-coding downstream 69 53047592 ~ 53047671 (-)
G58519 NA non-coding downstream 15719 53030578 ~ 53032021 (-)
G58518 NA non-coding downstream 19026 53028355 ~ 53028714 (-)
G58485 NA non-coding downstream 106276 52941223 ~ 52941464 (-)
G58596 NA non-coding upstream 144836 53204782 ~ 53205315 (-)
G58659 NA non-coding upstream 235302 53295248 ~ 53296349 (-)
G58672 NA non-coding upstream 285787 53345733 ~ 53347979 (-)
G58613 NA non-coding upstream 324671 53384617 ~ 53386535 (-)
G58694 NA non-coding upstream 334002 53393948 ~ 53400122 (-)
G57742 NA other downstream 551506 52495898 ~ 52496234 (-)
G56764 NA other downstream 1300520 51746617 ~ 51747220 (-)
G56372 NA other downstream 1643397 51400727 ~ 51412569 (-)
LOC110524514 borcs5 other downstream 2255671 50777716 ~ 50792069 (-)
G55627 NA other downstream 2280309 50765363 ~ 50767431 (-)
G58565 LOC106561659 other upstream 79512 53139458 ~ 53140304 (-)
G58718 LOC100194703 other upstream 366018 53425964 ~ 53426316 (-)
G58842 NA other upstream 528476 53588422 ~ 53588770 (-)
LOC110525178 LOC106581842 other upstream 702009 53761612 ~ 53774544 (-)

Expression


Co-expression Network