LOC110524927 (LOC106573064)


Basic Information

Item Value
gene id LOC110524927
gene name LOC106573064
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 53059953 ~ 53072748 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021604891.2
ACGTTTTCTGGGATGGGTTTTTTATCGGTGGAAACAAGATGGCGGCTCTGGCAAGAGCGCCAACATATATACTCGAATAGATGTCAGAAGTATCCCTCATCGAGCGTTTTGTTCACAACCTGCACGTCTTTCATGCATCATGAAGACCGGGAGCATGTTTTATAGCCGGGATTGAATAAACTAGGACCGTTATTAAAGTCAGCAAGATGTGCGAGAGCTATGCTCGCTCGCTGCTGCGTGTGTCGGTGGCGCAGATCTGCCAAGCGCTGGGCTGGGATGCAGTGCAGCTCACAGCCTGCGACCTGCTCTCCGATGTTCTTCACAGATATATCCAGCAGTTAGCCAGGGGTTGTCATCGATACTCGGAGCTATATGGGCGAACAGACCCAGTACTGGAGGATGTGGGCCAGGCCTTCAGACTGCTGGGTGTGAGCCTGTCTGAGCTGGAGGACTATGTCCATAACCTGGAGCCTGTGGGGTTCTCCCAGCAgacacctctcttccccctcagcaAAAATAACATGCTGCAGTTCCCTCAGCCTGGAGTGGGGGTACGGGGGGATACCGAGGAGAGGAGGGAATACATTCCAGATTATATGCCACCCTTGGTCTCTTTGCAAGAAGaagaggaggaggaagaagccCTAGCTGACATGGGTACCTCTGCTGAGGCCATGCAGGTCCCGCTGGACGATACAGACGAGGACATGGATGACGACGAGGTGGTGAACGATGAGAACCACCCTGTGAAGAGACACTTGGACAGCCCCGACGCCGCCATGGGTATGATGCCCACCTCCAAGAGGCCTCGCATGCACCCCGGCTTCAGCCCCGACTGGAGCATGGAGCCCAGGGAGCCCCTCACCTCCCTCAACCCTCAGCGTGTCCCTCCAGGCATGATGGCCTCCCATTCCCACGACAGCATGGGTTCAATGTCTCTGTCCCCAGAGACACCTGGGCCTCCGACATTGTTCAGACCCCAGCCGGTGACCCCAGGGAGACACTCTGATCATAAGTCTCATGGCGGTCAAGGCCGCAAAGGGCCAAAAGGCTCATCCCCTGGTAGGCCACGGACTAAGTCCCCAAAAGGGGTCAATGCTGGTGGGGCTATGTCAGGCAGCCCCATCCGCTCTCCCAAATCTTCCAAGGAGCGGAAAAAGTCCCCGGGTCGGACCAAGAGCCCTAAAAGTCCCAAAAGCCCCAAGATGGGTTCTGGAGTCAAGTCTGGTTCTCACTCCCAGGGAAAAGCAGAGGCTCAGGCCCTGGCCCTACAGAGACTTCCCTTGTCGGCCCTCAGCGAGAGGATGGGGAAGGAAAACATCCACGTGCGGCAAAGCCTGGAGGAATGCGAGCTGGCGGGTTTCGTCTCTGATAAACTCTGCGAACCTGGCGGCGACAACGCTGATATTGATGATTCTATCGACGCTGTGATTGCCAGGGCATGCGCTGAGCGAGAGCCTGATCCGTTTGCCTTCTCATCAGGCTCCGAGTCGGAGAGTGATGGCTTCTCCTCTCCACGGAGGCTTACTATCATGGAGCCAGGCGGAACGCCTAAGCTCTCACTAGGTGCCAACAGCCTGGGTAAAGACACTTCTACGCCGCTTCAACTCAATGCAGACGGTGGCCCCGGGAACTGGACCATGGACGACTCCATCAATGAGGTCCTACGTAAAGTAAACCAGGGAGGTCCCAATGCGGGACACCCCCAAGGCGAATCATACCTGTCCTCAGCATCCGCCTCGCCCCCGACCCCTGAGCCCCTCCTCAAGATGTACGAGGAGAAGAACAAGCTTGTCTCCTCGGCTGACATCAAGAAGAAACTCAAAAAGGAGCTGAAGACAAAGATGAAgaagaaggagaaaggagagaagccAAAAGATAAAGAGAGGGATAAGGACAAGGGGAAGATGAAAGAGAAGAACAAGGATAAGAACAGGGATAAGAGCAAAGATTCTTTCTCCAAGGAGGCCAAGATGCCGTGGAAGGACTTCGGTAACAAGGACGATGACCTCAGGGAACACTTCCTGGGTCAGAGGCCAGGGTTCGGCGGACCAGAGGGCTCCATGATCAAGATCAAGTCGCGAGATGGAGGGGATGGCAGTGGTAAGAAGGAGAAGgacaaacacaaagacaaaaAAAAGGACAAGGAGAAGAGCAAGAAGGGCAAAGACAAGCGGGACAAGGGTAAGGACCGGCAGAAGATATCCTCCCTCACCCCGTTCGGTTTGGGTGACATGCCTGCCCTGTTCAGCCCATCGACGTGTCTCCGCATCCCCTCCATGCTGCCGCCTCTTCCGCCTATCCTCCAGGAAAAGGATGTGAAGAGCAAGGAGAAGGACAAGAAGAAAgacaagaaggagaagaagaagaagaaagataaAGACAAGGAGAAGGAAAAGGAGAGGGAAAAGtccaaggagaaggagagggagaaagaggagaagaggaaagagaaggagaaagacaaGGAAAAacgggagaaggagaaagaaaaggAAAAAGAGAGGATTAGGCTGGAAAAGGTGAGGGTGGAGACTCCAGTTGCTGTCCCATCACCAGTCATCCCCAGGCTTACCCTAAGGGTTGGGGCTGGCCAGGACAAAATagttatcagtaaGGTAGTTCCCAATTCCGAGCCACCGCTGCCGCCACCCAAGATGCCAGCACCCAAGATCACCGCCACTAAATCAGGACCTGGCAGTCGCCTTCAGcccccacctcctccaccactatTGTCCCCAGTTGTACCCTCGTTGCTCTCCCCcgcctccattctgtcctccaGCAAACTGCCTGTACGCAGTGTGATCACTGAAACTGTCAGAACATACGTGATTCGTGATGAGTTGGGGAACCAGATCTGGATCTGTCCTGGTTGCAACAAGCCTGATGACGGCAGTCCCATGATCGGCTGTGATGACTGCGATGACTGGTACCATTGGCCATGTGTTGGGATGGTCTCGGCCCCTCCCGAGGACCAGCAGTGGTTCTGTGTGAAGTGTGCTGGCAAGAAGAAGGACAAAAAACACAAGAAGCGGAAACACAAAGTGCATTGAGACTACGCAAAACAAAGCACACTTTGGACTTTTCATTAGCTGGACTGACTGCTTCTTCAAGCCATACTGGAACACTTTTGGCACTgctgtaaaaaaaagaaaagaaagaaattaAAAACATGACAGATAAGACATTCACACATCCTGATGATTTTTAGTGAATGACATGAGCCTAACAGACTCTTTAACCAGCACATATCCAACCTCAGCTTTTAAGGCTATGTCCTAGTTCTGTACCCTTCTCCCAACGTGTGCATGTGGCTTGCAcactaaaagcattggattgatGTAAGCATTGGCTGGAGAGAGTTTCCACCATTGTTTAAATCGGGAGAATTAGGACGCAGTCTTTGTTGTGCGAGCCCTTGGCCCAGCGTTCTGTAGGTGTGATGTTGTCACAGAGATCATGCCTTTCCATCATCGTGGTTCCAAACCGATCACTGTTGAGTTCAATGTTGTCAAAGATAGCATTGgcatggtatagagagaaatctACATTCATCCATCTTCATATTATTCTTGTTGTTTTGTTAGTATTTCCATAACCTGGTCCGttatctgtttgtgctgtcttgccaagtcCTATGGCCTTTGGCTTGAGTTGGAGatggcaagacaacacaaacatatCTGGGAACAAGGCTAGTATTTCCACAAAAAGGTCAACAACATCAAACTGAATGACAGATTCAGATCCCCCCCGGTTTTCTGCAGTATCATTTaaatatgtaatgtatataaagGTAACTGCATTTGTGTGTATTATAAAATGCGTAAATACCAACTTCCAACCAAGCCAAGTGCGTTCTGTTCTTAGGAGTCTTCtgacttgttaaatccatttccaaattatttttttttttaaaatgattttctgtatattttttttaattacattttttttctcccccttaTGAATTATCCCCCAATCAGTTATACTGTAGCTGTGCTCGTTGTACACGTATCTCATTTTGCTGATATTTACAATATTAAAGCCTAACAGTCTCA

Function

NR:

description
transcription initiation factor TFIID subunit 3-like

GO: NA

KEGG:

id description
K14650 TAF3; transcription initiation factor TFIID subunit 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021604891.2 True 4064 mRNA 0.50 7 53059953 53072748

Neighbor

gene id symbol gene type direction distance location
LOC110524916 LOC106573063 coding upstream 12268 53007984 ~ 53047685 (+)
LOC118964862 NA coding upstream 74704 52965815 ~ 52988549 (+)
LOC110524905 s35b4 coding upstream 97121 52955803 ~ 52962832 (+)
LOC110524881 LOC106573069 coding upstream 123078 52925635 ~ 52936875 (+)
LOC110524847 LOC106561671 coding upstream 134480 52904644 ~ 52925473 (+)
LOC110524948 LOC106573061 coding downstream 8225 53080973 ~ 53149689 (+)
LOC110524999 LOC106573060 coding downstream 86485 53159233 ~ 53181760 (+)
LOC110525010 LOC106573059 coding downstream 114270 53187018 ~ 53233174 (+)
LOC110525022 LOC106573057 coding downstream 177861 53250609 ~ 53296485 (+)
LOC110532423 LOC106561694 coding downstream 283003 53355751 ~ 53373462 (+)
G58192 NA non-coding upstream 28000 53031123 ~ 53031953 (+)
G58230 NA non-coding upstream 62523 52997224 ~ 52997430 (+)
G58229 NA non-coding upstream 63111 52996626 ~ 52996842 (+)
G58205 NA non-coding upstream 116696 52942885 ~ 52943257 (+)
G58278 NA non-coding downstream 131328 53204076 ~ 53206257 (+)
G58187 NA non-coding downstream 160787 53233535 ~ 53314985 (+)
G58181 NA non-coding downstream 261993 53334741 ~ 53337311 (+)
G58369 NA non-coding downstream 352792 53425540 ~ 53425822 (+)
G58371 NA non-coding downstream 353879 53426627 ~ 53426922 (+)
LOC110524575 fgf3 other upstream 1609018 51449353 ~ 51451460 (+)
LOC118964841 NA other upstream 2975957 50037523 ~ 50184257 (+)
G53181 NA other upstream 4166041 48893497 ~ 48893912 (+)
G52324 NA other upstream 4676696 48380542 ~ 48383257 (+)
G52080 NA other upstream 5034995 48006674 ~ 48024958 (+)
LOC118936380 LOC106581842 other downstream 593467 53632830 ~ 53705421 (+)
G59031 NA other downstream 915392 53988140 ~ 53988597 (+)
LOC110525327 LOC106573036 other downstream 972101 54044813 ~ 54089850 (+)
G59963 NA other downstream 1648440 54721188 ~ 54721463 (+)
G61202 LOC106573044 other downstream 2832760 55905508 ~ 55923376 (+)

Expression


Co-expression Network