LOC110524998


Basic Information

Item Value
gene id LOC110524998
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 53077658 ~ 53084723 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005052089.1
TTCAGAAGCGATTGACATTCGTCTTCTGCATCCCCCAGCTCATTTCTCCTCCAATCGCCAAATTGAAAAAGAAACTACATGCGAGCTGTCAACTGCAAGAGAGAGAGGCGTGACTACCTCTGTTCCCTGTCAAGGAGACGCAACTTTCCCGATCCCTGTGGACCAATACATCAGTATTGTGTATTCACAATACATTGGTTTTGAGTCATGTAATATAAGAAGGTAAATGTATTTattcacatttgatttgatgataacTTCAATCAACAGGATCAATATGCGAGTTTGTGAAGATGACTGAAGGGGGTGGATTTTGGGAAGGGGGGAGATTTTCCCCCAGATCACAAGATAGCTTGTATCTCTTTTcctttcagtgaaaaacatacaCATCACAAATCTACTCTAACCCACCATGGCATGAGAATGAATAGTTCAACTGAAAACAATGAATTGGTCCTATAACAATATCCGTTATTCACCACCACAGGGACAAATAATCATTATAAACACTGGCTAAAGCCCCAACCCCAACCACAACAAAAGCCAGCCAGGCTAGATCTGACTCATTCATTCTGAATGAGGGGCCAACCCAACATCCAAGGACAACGTACCTCAGAGATCCTAGGTCCTCATTCCTGACGGGGACACCGGCGGCGGAGGCAGAGGGGGGACAGCGCATGCCGTTGACGTATATGCTCTGCACCAGGGCTAGCTCCGACGAGTGTTCCAACATCGCACGGGACTCTTCCAGAAAAATCCACCTTCTTATGAGGATGCGCATATGTCACATTCTTCACATTCCCTGGACTGACTGATGATAAACCAGAGgatgagaagagggaggggagagaggtacaGGGAGCGACACAGAGAGGGGGTGATGGAGACCTTTGTGAGAGGGGGAGACCGAGCCAACCCTGTCTacctctataccctctctccaactacagtacagtatgttctcATTATTACACTGGTGCAGAGATGGATAGCATAGCTTGCTGTATGTTTAGTCAGTAAGAAAAAATTCTGGTAAGCATGGCTATCTTTTAATAAAGGAAGGATTACGCTAGTCTCCTCTCTCAGATGGCATTTTGTTTGCATGTTAAGCCTAACATGAACAGAAATCTCTCTGCAATACTTTGCTATATGAAATATAGCCCCAGgttacgttccaaatggcaccctattcccatatagtgcactacttttgatcagagccctataggccctggtcaaaagtagtgcactacaaatggaatagggtgccatttgggatacactcATTATCATATCCCATGGCAGTGTAGCATATTAGTTGTTTGACCATGTCAAATACTAGTGTGGTCAGTTGTTATATCTGTTTGTAGTATAGCCAACGGTTCTTCTAACGTGCGTCTATTGTCTTGTTTGGCATGACAACACACGGTAGAGACGTTGGctatagcacaaacagatctggtaaCTAGGCCAGTCAAATGCATTCTCAACTACTTCacataagacacacacacacacacacacacacacacacttgaagggCAGTTTTACATAAAGTGTTGTCACAGACCCTGGAGCCATTGGCCACCATCAACTGACAACAGGAACCAAAACATGAAGAGGCATACCCTTATGTCGTTTCAAATTACTGCCCTAATTTGCATAGCTTATACACCTACAATAGAGTTACCAAAATTAAAAGTATGGCATGCAGTCAGATAATTTCCTGTTTATAACTTTATGTAGTTTAAAACTACTGCTTTAGTACCATAATTTGCATGGCAACTCATCATAGTCCATCCGGACTACACCACAGTGCTATCAAAGTGAAGAGTATGGCAGGAGTACAGTAGGCAGAGGAAATAAACTAGAAAATATTTCACTATGGCTTGCAGCCAGATGACTTCCTGTTGATGCGTATAGTTCCTCCTTTTATTCCAGGTACATAAAGAAACAACCTAGTGTTTCAGTCTTACAACTTTAAGATGAGATTTGCTCTGTAATATCCTTCTCGGACTCTGAGAGCCCAGGAGAAAATAAATCTAGGCCTCCGACCCCCATAGGcgttctctcttgctctctttctcattctctctctctgactttaaGTAGGAAAGTCATTTGAAACAGGGTCATGTATGCTGTGCAgtacatgtgggtgtgtgtgctgcATGTGTGCCGAGCGGGTATCATAGGGGATAAGACTGACATGGTGAAGGGGATCCTCTGATCTGAGCGTAAATCCCTCTGGTTTCAGCCTTGCTCTTTCTTGCACACTTAGTTTCCGCTGACATAAATATTTTAACGCTGATGTTGAAACCCTAGCTAGTCTTTGTGATGTGTAGCTGCACCATATAAAGCAGAGAGCAACTAAAGTTATTGTGTTCTTGCACTAAGTGAACTTACAGTATCTCCTGAAATACCTCTGATCCAAGTGATACATTCAACAGTAGGCTTGATTCTAATGGACGAAAATTGATTTTGAAAGTGAAGCTGTATCTATTACAGAAACATTGAAGTTAAATTATTCAGGAACTAACATCCATTTCAAGGTAACACTTTCCAGAAGGTGAATAGAATCTGAAAGGGAAGACTGCACATCTGTAAACCAACCACATGTGCTAGGCTACTGAAAGACACGTGAAAGGGTTTGAGACCTcttgtctgtcagtctctctctcactctttcgtTCTCACTCACGTGCTCCCCATGACCCAAAGTGACAGGGTCGGTTTGTCTGGTGACTCAATGTTCACTAGCACTGCAGAAATACTTTTTTATGAAACCGGAAAACAACTACCAGGAACTTTCTACGGTCAGATTGTGAAactgctgcctgtctgtcttgtttTGTTGAAACCTCCATCCATTCTTTTGTGAAAATGAAACCTCCATCCATAGGCTTTGGTTCTGGGTGTTGGAGGTGTCTGATAGCTTTCATTGGGTaatctcaaatcaaattgcattggtcacatatacatacttagcagatgttattgcgggtgtagcgaaatgcttgtgttcctagctctaacagtgcagtagtatctaataGTGCAGTAGAATCTAAAAATTAttcacaatacacacatctaaaagaatGGAaatgggttggtgccccccccttgggttgtgccgtggcagagatctttgtgggctatactctgccttgtctcaggatggtaaa

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005052089.1 True 3188 mRNA 0.43 3 53077658 53084723

Neighbor

gene id symbol gene type direction distance location
LOC110524937 LOC106573065 coding downstream 17712 53047740 ~ 53059946 (-)
LOC118964864 NA coding downstream 57539 53007483 ~ 53020119 (-)
LOC110524896 LOC106573068 coding downstream 121942 52943860 ~ 52955716 (-)
LOC110521107 LOC106573149 coding downstream 258716 52816161 ~ 52818942 (-)
LOC110532414 LOC106573136 coding downstream 262373 52810849 ~ 52815285 (-)
ucmab LOC106573148 coding upstream 153612 53238335 ~ 53250903 (-)
LOC110525034 elk3 coding upstream 213640 53298363 ~ 53310125 (-)
LOC110525078 LOC105021811 coding upstream 252307 53334724 ~ 53338484 (-)
LOC110525089 LOC106573055 coding upstream 288978 53373701 ~ 53384476 (-)
LOC110525255 LOC106573039 coding upstream 628990 53713713 ~ 53758738 (-)
G58523 NA non-coding downstream 29987 53047592 ~ 53047671 (-)
G58519 NA non-coding downstream 45637 53030578 ~ 53032021 (-)
G58518 NA non-coding downstream 48944 53028355 ~ 53028714 (-)
G58485 NA non-coding downstream 136194 52941223 ~ 52941464 (-)
G58596 NA non-coding upstream 120059 53204782 ~ 53205315 (-)
G58659 NA non-coding upstream 210525 53295248 ~ 53296349 (-)
G58672 NA non-coding upstream 261010 53345733 ~ 53347979 (-)
G58613 NA non-coding upstream 299894 53384617 ~ 53386535 (-)
G58694 NA non-coding upstream 309225 53393948 ~ 53400122 (-)
G57742 NA other downstream 581424 52495898 ~ 52496234 (-)
G56764 NA other downstream 1330438 51746617 ~ 51747220 (-)
G56372 NA other downstream 1673315 51400727 ~ 51412569 (-)
LOC110524514 borcs5 other downstream 2285589 50777716 ~ 50792069 (-)
G55627 NA other downstream 2310227 50765363 ~ 50767431 (-)
G58565 LOC106561659 other upstream 54735 53139458 ~ 53140304 (-)
G58718 LOC100194703 other upstream 341241 53425964 ~ 53426316 (-)
G58842 NA other upstream 503699 53588422 ~ 53588770 (-)
LOC110525178 LOC106581842 other upstream 677232 53761612 ~ 53774544 (-)

Expression


Co-expression Network