LOC110524999 (LOC106573060)


Basic Information

Item Value
gene id LOC110524999
gene name LOC106573060
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 53159233 ~ 53181760 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_002473689.2
TTAGTTTGGGTTACTTTCCTAAGCTATTCTTGAAAATGAGTTCTCTCATCAATTATTCCATGCTTATTTCTAGAAAATATTAACTTATTTTAGAATATTTGTCTGTCTTTGACCATTCTGCGCTTTGGCCAAATCACAGAACATATTGAATTGTCTTCGGCGAAGTACTCTGATGGCTCAACCAATCAGCTTGCAGTGGGGTGTCACCTCCCATCTTTGTCAAACAGTATGGCTGACGTTCTGTAGTGTGTGTAAGCTTCTAACTCGTGTTGACCTATTTTATTCATTTTAAATCATGTCAGTGCTATTATTCTTGAAAAACTTGCACTGCGTTAACAAAGTTCCTCTGAGTGTCGCGCGCCCGGTCGTCGGTTGTCTATATCACACCGAAAAAGGAGTCTACGGTTACCGACCCCAAAAAATCGAGGGGGACCCGAAGTTGCAGAGCGACCATATCGCTACACTCAATCAAGATCATGGTCTCATGCGCCTGGTGGAGGCATACCGAGCACATGGACACAAGGCTGCTAAAATTAACCCTCTACTGCCAGAGGACCCTGTGGAGGACACTGTGCCAGAGATCAACATGTTGACTGGGGCTGTACAAGGACCTCTCAACACATCTGGACTGCGTCACTTTGGTAAGGCTGAGGCCTCAGTGGAGGAGGTGCTTGCCTACCTGGAGGGGGCCTACTGTGGCCGCATTTCCGTAGAGACTAGTCAGTTGACCAGTCTGGAGGAAAGGGAGTGGCTCGCCGACCGCTTCGAGGAGTTGAAGAAGGAGACATTTGCGGCGGAGGAAAGGAAAAAGTTGGCCAAACTCATGCTGGAGTCGCagGAGTTTGATAATTTCCTGGCAAACAAGTTTTCCACGGTGAAGCGTTACGGTGGTGAGGGAGCAGAGAGCATGATGGGAGTGTTCTATGAGATGTTCCGCCTGTTGTCCCACAGTGGGGTGACGGACATCGTCATGGGGATGCCTCATCGCGGGCGACTCAACCTCCTCACGGGGCTGCTGCAGTTCCCACCAGAGcTGATGTTCCGTAAGATGTGTGGCCTCAGTGAGTTCCCAGCGGACTCTCCCTCCATCGGTGACGTCCTCTCCCACCTTACCTCCTCTGTAGAGCTGGATTTCGGTGCTGCCCACCTCCTCAAAGTGACCATGCTGCCCAACCCCTCCCACCTGGAGGCCATCAACCCAGTCACCCAGGGGAAGACCAGGGCCCGGCAGCAGCTCAAAAAGGAGGGAGACTACTCACCAGACGAGAACGCACAGCCTGGGAATAAAGTCGTATGTCTccagGTCCATGGGGATGCCTCATTCTCGGGTCAAGGGATTGTTCCAGAGACATTCACCATTTCACTACTCCCCCACTTCAGAGTCGGTGGGAGCATCCACCTCATTGTAAACAACCAAGTGGGTTATACAACTCCATCTGCGAGAGGGAGATCGTCTTTATACTGCAGTGATGTTGGTAAGATGGTGGGCTGTGCTGTGGTCCATGTGAATGGTGATGATACGGAGGAGGTGGTGCGTGCCACACGTTTGGCGGTAGAGTATCAGAGACGCTTCAGGAAGGATGTCATCCTGGACCTGCTCTGCTACAGACGGTGGGGACACAACGAGCTAGACGAACCTGGTTTCACTAACCCTGCCATGTACAAGATTATCCGCTCCAGGAAGAGCATCCCAGATTCCTACGCTGACCAGCTGATCTCAGAGGGCCTGATGACAGGGGAGGAGTATAGTGCCATCAGGACAGCCCACTACGGCATGCTGAACGACAAGCTGGCCAACATGACCTTATACagcccaccacccaccaacctgCAGggTCGCTGGGGAGGTCTGGAGGAGCCCCAGGCCAGAGTCACCCACTGGGACACAGGGGTGCCTGTCCCCCTGCTGCAGTATGTAGGGGCTAAGTCTGTGGAGATACCCGAAGAGGTCCAGCTACACAGCCACCTTGGGAAGATGCATGTGGCGGGTCGCCGCGCGAAGGTGGAGAATGGAACTAATCTGGATTGGTCCACTGCTGAGGCCATGGCGTTTGGCTCTCTGCTCTGCCAAGGGTTCAACATTCGTATCAGTGGACAGGATGTTGGTAGGGGCACCTTCAGTCAGAGACATGCCATGATAGTTTGTCAAGACACAGATGACATGTACATCCCCCTCAATCACATAGACCCTGAACAGAAAGGATTCATGGAGgtgTGCAACAGTGCCCTGTCTGAGGAGGCCGTGCTGGGCTTTGAGTATGGCATGGCCATCGCCCAGCCTAAACTTCTGCCTATCTGGGAGGCTCAGTTTGGAGACTTCTTCAACGGAGCTCAAATCATATTCGACACCTTTCTCTCTGGAGGCGAGGCGAAGTGGCTGCTGCAGTGTGGGATGGTGATCCTGCTTCCCCATGGTTACGACGGAGCAGGACCTGAACACTCCTCCTGCCGCATGGAGAGGTTCCTACAGcTGTGTGACAgtaaggaggagggggtggatggtGACAATGTCAACATGGGCGTGGTCAACCCTACGACTCCAGCACAGTACTTCCACCTGCTGAGACGACAGATGATACGCAACTTCCGCAAGCCGCTCATCGTTGCTGGGCCCAAGACTCTGCTCCGATTCTCTGGAGCAACATCCAGTCTGGCTGACATGGCTCCTGGAACCTCTTTCAAACCTGTGATTGGTGACACCTCAGTCACACCAGCCAGTGTCCAGCGGGTGGTGCTGTGTTCAGGGAAGCACTACTATGCCCTTTTGAAGCAGAGGGATGCATCCGCAGCCACTCAGACCACAGCACTGATCAGACTGGAGGAGCTGTGTCCCTTCCCTCTGGAAGCCCTGCAGCAGGAGCTCACCAAGTACACCAATGCCAATGAGTTCGTCTGGAGCCAGGAGGAGCCCCAGAACATGGGCCCCTGGTCCTTCGTGGCCCCTAGGTTTGAGAAGCAGCTGGCCTGCAAGCTCCGGTCGGTGAGTCGGCCTACTCTGCCCGCCCCGGCTGTGGGCATCGGAACGCTCCACCACCAGCAGAACGAGGCCATCCTAACTGCCACCTTCTCCTCTTGAGCCACCGGGCCCCAAGATGGCTGCTCCCGTGGGCCCCAGAATGGATGCACCCTCCCTCCTCCAgacaagcacacagccaagacaatgcaggagtggcttcgggaaaagactctgaatgtccttgagtgtgccagccagagcccggacttaaacctgatcgaacatctctggagagacctgaaaatagttcccatccaacctgacaaagcttgagaggatctgcatagaagaatgggagaatctccccaaattcAGGTTTGCcgtgcttgtagcgtcatacccaagaaagctcgaggctgtaatcgctgccaaagtactgagtaaagggtatgaatacttatataTGTCATCAgttgtttttttagttttttatacatttgcaaaaatgtcaacttgtttttgttttgttattatggcattgtgtctagattgatgagggtAATATTTTTTCATCCATCATTAGAATTAGGCTATaacatagcaaaatgtggaaagtcaaggggtttgaatactttctgaatgcactgtacaacaGTATAAGGAAATGGCAACACTCAATCTTCTCAAATAAATGAACTATATTTTCA
>XM_021604968.2
TAGTTTGGGTTACTTTCCTAAGCTATTCTTGAAAATGAGTTCTCTCATCAATTATTCCATGCTTATTTCTAGAAAATATTAACTTATTTTAGAATATTTGTCTGTCTTTGACCATTCTGCGCTTTGGCCAAATCACAGAACATATTGAATTGTCTTCGGCGAAGTACTCTGATGGCTCAACCAATCAGCTTGCAGTGGGGTGTCACCTCCCATCTTTGTCAAACAGTATGGCTGACGTTCTGTAGTGTGTGTAAGCTTCTAACTCGTGTTGACCTATTTTATTCATTTTAAATCATGTCAGTGCTATTATTCTTGAAAAACTTGCACTGCGTTAACAAAGTTCCTCTGAGTGTCGCGCGCCCGGTCGTCGGTTGTCTATATCACACCGAAAAAGGAGTCTACGGTTACCGACCCCAAAAAATCGAGGGGGACCCGAAGTTGCAGAGCGACCATATCGCTACACTCAATCAAGATCATGGTCTCATGCGCCTGGTGGAGGCATACCGAGCACATGGACACAAGGCTGCTAAAATTAACCCTCTACTGCCAGAGGACCCTGTGGAGGACACTGTGCCAGAGATCAACATGTTGACTGGGGCTGTACAAGGACCTCTCAACACATCTGGACTGCGTCACTTTGGTAAGGCTGAGGCCTCAGTGGAGGAGGTGCTTGCCTACCTGGAGGGGGCCTACTGTGGCCGCATTTCCGTAGAGACTAGTCAGTTGACCAGTCTGGAGGAAAGGGAGTGGCTCGCCGACCGCTTCGAGGAGTTGAAGAAGGAGACATTTGCGGCGGAGGAAAGGAAAAAGTTGGCCAAACTCATGCTGGAGTCGCagGAGTTTGATAATTTCCTGGCAAACAAGTTTTCCACGGTGAAGCGTTACGGTGGTGAGGGAGCAGAGAGCATGATGGGAGTGTTCTATGAGATGTTCCGCCTGTTGTCCCACAGTGGGGTGACGGACATCGTCATGGGGATGCCTCATCGCGGGCGACTCAACCTCCTCACGGGGCTGCTGCAGTTCCCACCAGAGcTGATGTTCCGTAAGATGTGTGGCCTCAGTGAGTTCCCAGCGGACTCTCCCTCCATCGGTGACGTCCTCTCCCACCTTACCTCCTCTGTAGAGCTGGATTTCGGTGCTGCCCACCTCCTCAAAGTGACCATGCTGCCCAACCCCTCCCACCTGGAGGCCATCAACCCAGTCACCCAGGGGAAGACCAGGGCCCGGCAGCAGCTCAAAAAGGAGGGAGACTACTCACCAGACGAGAACGCACAGCCTGGGAATAAAGTCGTATGTCTccagGTCCATGGGGATGCCTCATTCTCGGGTCAAGGGATTGTTCCAGAGACATTCACCATTTCACTACTCCCCCACTTCAGAGTCGGTGGGAGCATCCACCTCATTGTAAACAACCAAGTGGGTTATACAACTCCATCTGCGAGAGGGAGATCGTCTTTATACTGCAGTGATGTTGGTAAGATGGTGGGCTGTGCTGTGGTCCATGTGAATGGTGATGATACGGAGGAGGTGGTGCGTGCCACACGTTTGGCGGTAGAGTATCAGAGACGCTTCAGGAAGGATGTCATCCTGGACCTGCTCTGCTACAGACGGTGGGGACACAACGAGCTAGACGAACCTGGTTTCACTAACCCTGCCATGTACAAGATTATCCGCTCCAGGAAGAGCATCCCAGATTCCTACGCTGACCAGCTGATCTCAGAGGGCCTGATGACAGGGGAGGAGTATAGTGCCATCAGGACAGCCCACTACGGCATGCTGAACGACAAGCTGGCCAACATGACCTTATACagcccaccacccaccaacctgCAGggTCGCTGGGGAGGTCTGGAGGAGCCCCAGGCCAGAGTCACCCACTGGGACACAGGGGTGCCTGTCCCCCTGCTGCAGTATGTAGGGGCTAAGTCTGTGGAGATACCCGAAGAGGTCCAGCTACACAGCCACCTTGGGAAGATGCATGTGGCGGGTCGCCGCGCGAAGGTGGAGAATGGAACTAATCTGGATTGGTCCACTGCTGAGGCCATGGCGTTTGGCTCTCTGCTCTGCCAAGGGTTCAACATTCGTATCAGTGGACAGGATGTTGGTAGGGGCACCTTCAGTCAGAGACATGCCATGATAGTTTGTCAAGACACAGATGACATGTACATCCCCCTCAATCACATAGACCCTGAACAGAAAGGATTCATGGAGgtgTGCAACAGTGCCCTGTCTGAGGAGGCCGTGCTGGGCTTTGAGTATGGCATGGCCATCGCCCAGCCTAAACTTCTGCCTATCTGGGAGGCTCAGTTTGGAGACTTCTTCAACGGAGCTCAAATCATATTCGACACCTTTCTCTCTGGAGGCGAGGCGAAGTGGCTGCTGCAGTGTGGGATGGTGATCCTGCTTCCCCATGGTTACGACGGAGCAGGACCTGAACACTCCTCCTGCCGCATGGAGAGGTTCCTACAGcTGTGTGACAgtaaggaggagggggtggatggtGACAATGTCAACATGGGCGTGGTCAACCCTACGACTCCAGCACAGTACTTCCACCTGCTGAGACGACAGATGATACGCAACTTCCGCAAGCCGCTCATCGTTGCTGGGCCCAAGACTCTGCTCCGATTCTCTGGAGCAACATCCAGTCTGGCTGACATGGCTCCTGGAACCTCTTTCAAACCTGTGATTGGTGACACCTCAGTCACACCAGCCAGTGTCCAGCGGGTGGTGCTGTGTTCAGGGAAGCACTACTATGCCCTTTTGAAGCAGAGGGATGCATCCGCAGCCACTCAGACCACAGCACTGATCAGACTGGAGGAGCTGTGTCCCTTCCCTCTGGAAGCCCTGCAGCAGGAGCTCACCAAGTACACCAATGCCAATGAGTTCGTCTGGAGCCAGGAGGAGCCCCAGAACATGGGCCCCTGGTCCTTCGTGGCCCCTAGGTTTGAGAAGCAGCTGGCCTGCAAGCTCCGGTCGGTGAGTCGGCCTACTCTGCCCGCCCCGGCTGTGGGCATCGGAACGCTCCACCACCAGCAGAACGAGGCCATCCTAACTGCCACCTTCTCCTCTTGAGCCACCGGGCCCCAAGATGGCTGCTCCCGTGGGCCCCAGAATGGATGCACCCTCCCTCCTCCAGTAAAACCACATTTACATCTCTTCTCTAGCCTGGACCTCCAGGCTGAATTTATCTCTGTTTCACATTTGTTTCACTCAACATTCTATGAATTGGTGAGATGAAACAATAGTGAGTCCAGGATCTCTTTTCTTCCTGTATGTTTAAATGTTCTCAAAAACACAAGTGCTAAAGGTTGCTTCTTCAATGTGGAGGGGGCTTCAGGTACTGAGTGGAACAAGACTGTTTGATGGTTTGGAAGGGCTGTTTTATCGCGCATTATGAAATGGAGCTGTAGCTGTCTAAAAACAATGTGATGTAAATGGTCTGAGATTGCATCGTAAAGCAACTCAATATTGC

Function

NR:

description
probable 2-oxoglutarate dehydrogenase E1 component DHKTD1, mitochondrial

GO:

id name namespace
GO:0006099 tricarboxylic acid cycle biological_process
GO:0030976 thiamine pyrophosphate binding molecular_function
GO:0004591 oxoglutarate dehydrogenase (succinyl-transferring) activity molecular_function

KEGG:

id description
K15791 DHKTD1; probable 2-oxoglutarate dehydrogenase E1 component DHKTD1

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002473689.2 False 3663 mRNA 0.52 19 53159233 53181760
XM_021604968.2 True 3475 mRNA 0.53 18 53159234 53178230

Neighbor

gene id symbol gene type direction distance location
LOC110524948 LOC106573061 coding upstream 9544 53080973 ~ 53149689 (+)
LOC110524927 LOC106573064 coding upstream 86485 53059953 ~ 53072748 (+)
LOC110524916 LOC106573063 coding upstream 111548 53007984 ~ 53047685 (+)
LOC118964862 NA coding upstream 173984 52965815 ~ 52988549 (+)
LOC110524905 s35b4 coding upstream 196401 52955803 ~ 52962832 (+)
LOC110525010 LOC106573059 coding downstream 5258 53187018 ~ 53233174 (+)
LOC110525022 LOC106573057 coding downstream 68849 53250609 ~ 53296485 (+)
LOC110532423 LOC106561694 coding downstream 173991 53355751 ~ 53373462 (+)
LOC110525096 LOC106573053 coding downstream 217290 53399050 ~ 53422754 (+)
LOC110525151 LOC106561689 coding downstream 255774 53437534 ~ 53485553 (+)
G58192 NA non-coding upstream 127280 53031123 ~ 53031953 (+)
G58230 NA non-coding upstream 161803 52997224 ~ 52997430 (+)
G58229 NA non-coding upstream 162391 52996626 ~ 52996842 (+)
G58205 NA non-coding upstream 215976 52942885 ~ 52943257 (+)
G58278 NA non-coding downstream 22316 53204076 ~ 53206257 (+)
G58187 NA non-coding downstream 51775 53233535 ~ 53314985 (+)
G58181 NA non-coding downstream 152981 53334741 ~ 53337311 (+)
G58369 NA non-coding downstream 243780 53425540 ~ 53425822 (+)
G58371 NA non-coding downstream 244867 53426627 ~ 53426922 (+)
LOC110524575 fgf3 other upstream 1708298 51449353 ~ 51451460 (+)
LOC118964841 NA other upstream 3075237 50037523 ~ 50184257 (+)
G53181 NA other upstream 4265321 48893497 ~ 48893912 (+)
G52324 NA other upstream 4775976 48380542 ~ 48383257 (+)
G52080 NA other upstream 5134275 48006674 ~ 48024958 (+)
LOC118936380 LOC106581842 other downstream 484455 53632830 ~ 53705421 (+)
G59031 NA other downstream 806380 53988140 ~ 53988597 (+)
LOC110525327 LOC106573036 other downstream 863089 54044813 ~ 54089850 (+)
G59963 NA other downstream 1539428 54721188 ~ 54721463 (+)
G61202 LOC106573044 other downstream 2723748 55905508 ~ 55923376 (+)

Expression


Co-expression Network