LOC110525022 (LOC106573057)


Basic Information

Item Value
gene id LOC110525022
gene name LOC106573057
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 53250609 ~ 53296485 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036980058.1
GAAGTTTCTAACAATGAACTGGCGATCATAGCGAAGTGGGTGGCGCTATTTCCCCTGGTGATCGAGGTTGAAATTCTTCTGTCTGAAAAAATACGTTCGATGACACGGCGGCGGTGGCACCGTCAGCAAGCAGTAGTCAGGCAGGCGCACACAGCTGAGCTCGCACCCCTCAACACCGATCCATCGTCATCATCGGTTTCTCACGCTGGTATGTTCTCCAACCGAAAAGGGAACAGTTCACTCGCTACTGCCCCCCCCACCACAAAGGTTCTAACTTCGAGTCCTCGATAGCCATGGCGTGAGCAACATCCACGCGGATTTAGGTGACATTATTGGAGATAAGAAACTACTACACCGAGACAACAAAGCATTCCTCTTTTTACATCGGGTGGAAAGACGGCATCCGGCATGAAAAGAAGCTCCGGGGACGGGGACACCGGTCGGAACAACGCAAATCGTTTCTGGCCTCCCCTTCCAGAGAGCTCCATGGAGAAGATGAAGCGGTTTAGGAGGAGGCTGTCCCAGACTCTGAGAGGGAGTCAGACCATCGACGAGTCTCTGTCTGAACTGGCTGAACAGATTACTATAGAGGAGAACGGCATCAAAGACAgcggtgaggaGCCCATGGTGAGGAACGGTCATGGTCTCCCCCCCTCAGCCCACAGTGTTAACTCCTTCCTGCACCAGTACACTGGTCCCTTTAAGAAGCCCCCGCTACGGAGACCTCAGAGTGTCATAGGAGGAGGAGGGCTAGGGTCTCTCATGGCCATGCCCCGCAACGGCAGCCGCctcgacATTGTCCATGAGAACATGAAGATGAGTTCTGATGGAGAGAGTGACCAGGCGTCAGGGACGAGCTCAGACGAGGTGCAGTCTCCCACAGGGGTGTGTCTAAGGAACAGGGGCAACCGACGCATTTCCGCAGAGgATCTGAACAAGCGTCTGTCCCTGCCTGCTGACATCCGTATCCCAGACGGTTACCTGGAGAAACTACAGCTGACGAGCCCCTCTTTTGACCAGCCCCTCAGCCGCCGCTCCCGAAGAGCATCactgTCAGAAATTGGATTCGGCAAGCTGGAGACCTACATCAAACTGGACAAAttaggagagGGCACGTATGCTACCGTGTTTAAAGGAAGGAGTAAACTGACAGACAACCTGGTGGCTCTGAAGGAGATCAGACTGGAGCACGAGGAGGGAGCACCTTGCACTGCTATCAGAGAGGTGTCCTTACTGAAGGACCTGAAACACGCCAACATAGTGACCCTGCACGACATCATCCACACCGACAAGTCCCTGACGCTAGTCTTCGAGTACCTGGACAAGGACCTGAAGCAGTACATGGACGACTGTGGGAACATCCTGAGCATGCAGAACGTCAAGATATTCTTGTTCCAGATCTTGCGAGGGCTGGCGTACTGTCACAAACGGAAGGTTCTTCACAGAGATCTGAAGCCTCAGAACCTGCTCATCAACGACCGAGGAGAGCTCAAACTGGCAGACTTCGGTCTGGCCCGGGCCAAGTCAGTCCCCACTAAGACGTACTCCAACGAGGTGGTGACGCTCTGGTACCGGCCTCCTGACGTTCTACTGGGCTCCTCAGAGTACTCCACACCGATAGACATGTGGGGTGTGGGGTGTATATTCTATGAGATGTCTGCCGGGAGGCCGCTGTTCCCTGGTTCGACTGTGGAGGACGAACTGCATCTCATCTTTAGACTGCTGGGCACACCTACAGAGGACAGCTGGCCTGGGATCGCTTCCATGGACGAGTTCAAGTCCTACAAGTTCCCAAAGTACAAGACACAGCCCCTTATCAACCATGCACCCAGGTTGGACACTGACGGCATTGACCTgctgctttcatttctaaaaTACGAGTCCAAGAAGCGGATGTCTGCAGACGAGTCAATGAGACAGCCCTACTTCAGGAGCCTGGGGACGCAAGCATACACACTGCCAGAGAGCATATCCCTATTTACGCTGAAGGAGGTCCAATTGCAGAGAGATCCTGGCTATAGGAACTCTAACTATCCCGAGTCAGGCAACGGCAAGAACAGAAGGCAGAGCCTGCTCTTCTAGGTTCCTGTTCAACAGCTAACTGTATAGTCATACAGACAGAGATAGTTCAGTCCCAGAGATGGATGTCTACTAGGGCCAGGGGGGTAGGatacccccctcctccctctgtgtgGCCCCCCCTCCACCTGCCAGGGTCCCCTATCTACACTACAGTTTGGCCCCTGGGGTTCTGGCCCAGTGAAACTGGCCCCATATAAGAGACGtttatacatttatatttattGGGGAAGAGAGAATTTGCTGCTAAAAATCCAACTACTGTCTAGAAGATTCTAACTGGCTCAGtcactttaaaaaaacaaaaacatgcaaTGTGTATAgatttttcattattttgaaGTGGTGTTTTATTCGTTTTGTGATTTTGTCATCATTCATCTCTATTATTTCCACCTCAaaactcctctgtgtgtgtgtgagtgtaagacagacagacggacccCGACGGACCCTGACCCGACCGACATCTTCGCTGTTGCAGTCTGACGTTTTGGATTTTCTCTCACCTGTTGACGTGCAACGGGGATGTATTCAAACGTCATCCATATTTCTGGACCTTTCATTTCACAAGATACTGTTGAGGCCAGTTCAGCCCTGACCATATCCACCTGCTGTCAACCTGAGATACTGTACCTCCATTTTGATAGAAGATATGGGAACAGTGATTGGCTTTGGTGAAAACAGGTTCACATAGTTGTTAGAACTGGAGCttccactgtactgtattatTTAAATTTCAGATAATATATCAATATGACCTGACAATCTAATACCCTGCACAACGTGACTACAGTGTACCGTGGGCGATCTGGAACGCATGATGACAACTCTTCTCTCTTACTGCACCAAACTTCCTGTGTCTGTCATGAAGGGTGTGTGAGCGGAGCTGAAATCCCACTGCACTGTCCAGCCactgtcatccatccatccatccattcattcccGAACCCTCCTTCAACCATCTGTAAAATGGTTCCTTATTTTGAATTGCATTCATCATAATTGTGTTGCACGCATGCTCTGTATGGGAAAAGAAGCACACATACAGTCACTGAACTTCTCGGATGCTTCCGAAATAGCATCCtactccttatatagtgcacttcttttgaccggAGCCTATGTGCTTCTAGTCAAAGGTAGTAGAGTATAGGGTGCTATTTCGGATGGAACCTTCCAATTATATTCAGGGTGCTCTTAGTACTCGTCCACGGCCCATATTAATGAAGCCtctcagaataggagtgctgatctaggatcagttataCCATTTATGATCGTAATGAATAAGACTCTGGGTACTCGGCTCTGTGCGCTCCAGCGGCTCGGAGAAGAGACTGTGAGTAACATTtcatggacagggaggacctgatcctagatcagcactcctactcagagacgctttatgaatacaggcccagttTTCCTAGTGAATACAGTACTGAGTTTGCGTACGGTCTACTTAACAGTGTTACCTGTTACCTTTTATGATACTATTCCGTTTAGGTTTATTTGTGGATCATTGTTATTGTTGGTGTGGCATATTGTTGGGATGCCCTCCTTATATTTGAgcttgattaaataaaaaaaaatctgagaaaATACAATTAAACTGAAGATGAAAAACA
>XM_036980062.1
GTTTCTAACAATGAACTGGCGATCATAGCGAAGTGGGTGGCGCTATTTCCCCTGGTGATCGAGGTTGAAATTCTTCTGTCTGAAAAAATACGTTCGATGACACGGCGGCGGTGGCACCGTCAGCAAGCAGTAGTCAGGCAGGCGCACACAGCTGAGCTCGCACCCCTCAACACCGATCCATCGTCATCATCGGTTTCTCACGCTGGTATGTTCTCCAACCGAAAAGGGAACAGTTCACTCGCTACTGCCCCCCCCACCACAAAGGTTCTAACTTCGAGTCCTCGATAGCCATGGCGTGAGCAACATCCACGCGGATTTAGGTGACATTATTGGAGATAAGAAACTACTACACCGAGACAACAAAGCATTCCTCTTTTTACATCGGGTGGAAAGACGGCATCCGGCATGAAAAGAAGCTCCGGGGACGGGGACACCGGTCGGAACAACGCAAATCGTTTCTGGCCTCCCCTTCCAGAGAGCTCCATGGAGAAGATGAAGCGGTTTAGGAGGAGGCTGTCCCAGACTCTGAGAGGGAGTCAGACCATCGACGAGTCTCTGTCTGAACTGGCTGAACAGATTACTATAGAGGAGAACGGCATCAAAGACAgcgaGCCCATGGTGAGGAACGGTCATGGTCTCCCCCCCTCAGCCCACAGTGTTAACTCCTTCCTGCACCAGTACACTGGTCCCTTTAAGAAGCCCCCGCTACGGAGACCTCAGAGTGTCATAGGAGGAGGAGGGCTAGGGTCTCTCATGGCCATGCCCCGCAACGGCAGCCGCctcgacATTGTCCATGAGAACATGAAGATGAGTTCTGATGGAGAGAGTGACCAGGCGTCAGGGACGAGCTCAGACGAGGTGCAGTCTCCCACAGGGGTGTGTCTAAGGAACAGGGGCAACCGACGCATTTCCGCAGAGgATCTGAACAAGCGTCTGTCCCTGCCTGCTGACATCCGTATCCCAGACGGTTACCTGGAGAAACTACAGCTGACGAGCCCCTCTTTTGACCAGCCCCTCAGCCGCCGCTCCCGAAGAGCATCactgTCAGAAATTGGATTCGGCAAGCTGGAGACCTACATCAAACTGGACAAAttaggagagGGCACGTATGCTACCGTGTTTAAAGGAAGGAGTAAACTGACAGACAACCTGGTGGCTCTGAAGGAGATCAGACTGGAGCACGAGGAGGGAGCACCTTGCACTGCTATCAGAGAGGTGTCCTTACTGAAGGACCTGAAACACGCCAACATAGTGACCCTGCACGACATCATCCACACCGACAAGTCCCTGACGCTAGTCTTCGAGTACCTGGACAAGGACCTGAAGCAGTACATGGACGACTGTGGGAACATCCTGAGCATGCAGAACGTCAAGATATTCTTGTTCCAGATCTTGCGAGGGCTGGCGTACTGTCACAAACGGAAGGTTCTTCACAGAGATCTGAAGCCTCAGAACCTGCTCATCAACGACCGAGGAGAGCTCAAACTGGCAGACTTCGGTCTGGCCCGGGCCAAGTCAGTCCCCACTAAGACGTACTCCAACGAGGTGGTGACGCTCTGGTACCGGCCTCCTGACGTTCTACTGGGCTCCTCAGAGTACTCCACACCGATAGACATGTGGGGTGTGGGGTGTATATTCTATGAGATGTCTGCCGGGAGGCCGCTGTTCCCTGGTTCGACTGTGGAGGACGAACTGCATCTCATCTTTAGACTGCTGGGCACACCTACAGAGGACAGCTGGCCTGGGATCGCTTCCATGGACGAGTTCAAGTCCTACAAGTTCCCAAAGTACAAGACACAGCCCCTTATCAACCATGCACCCAGGTTGGACACTGACGGCATTGACCTgctgctttcatttctaaaaTACGAGTCCAAGAAGCGGATGTCTGCAGACGAGTCAATGAGACAGCCCTACTTCAGGAGCCTGGGGACGCAAGCATACACACTGCCAGAGAGCATATCCCTATTTACGCTGAAGGAGGTCCAATTGCAGAGAGATCCTGGCTATAGGAACTCTAACTATCCCGAGTCAGGCAACGGCAAGAACAGAAGGCAGAGCCTGCTCTTCTAGGTTCCTGTTCAACAGCTAACTGTATAGTCATACAGACAGAGATAGTTCAGTCCCAGAGATGGATGTCTACTAGGGCCAGGGGGGTAGGatacccccctcctccctctgtgtgGCCCCCCCTCCACCTGCCAGGGTCCCCTATCTACACTACAGTTTGGCCCCTGGGGTTCTGGCCCAGTGAAACTGGCCCCATATAAGAGACGtttatacatttatatttattGGGGAAGAGAGAATTTGCTGCTAAAAATCCAACTACTGTCTAGAAGATTCTAACTGGCTCAGtcactttaaaaaaacaaaaacatgcaaTGTGTATAgatttttcattattttgaaGTGGTGTTTTATTCGTTTTGTGATTTTGTCATCATTCATCTCTATTATTTCCACCTCAaaactcctctgtgtgtgtgtgagtgtaagacagacagacggacccCGACGGACCCTGACCCGACCGACATCTTCGCTGTTGCAGTCTGACGTTTTGGATTTTCTCTCACCTGTTGACGTGCAACGGGGATGTATTCAAACGTCATCCATATTTCTGGACCTTTCATTTCACAAGATACTGTTGAGGCCAGTTCAGCCCTGACCATATCCACCTGCTGTCAACCTGAGATACTGTACCTCCATTTTGATAGAAGATATGGGAACAGTGATTGGCTTTGGTGAAAACAGGTTCACATAGTTGTTAGAACTGGAGCttccactgtactgtattatTTAAATTTCAGATAATATATCAATATGACCTGACAATCTAATACCCTGCACAACGTGACTACAGTGTACCGTGGGCGATCTGGAACGCATGATGACAACTCTTCTCTCTTACTGCACCAAACTTCCTGTGTCTGTCATGAAGGGTGTGTGAGCGGAGCTGAAATCCCACTGCACTGTCCAGCCactgtcatccatccatccatccattcattcccGAACCCTCCTTCAACCATCTGTAAAATGGTTCCTTATTTTGAATTGCATTCATCATAATTGTGTTGCACGCATGCTCTGTATGGGAAAAGAAGCACACATACAGTCACTGAACTTCTCGGATGCTTCCGAAATAGCATCCtactccttatatagtgcacttcttttgaccggAGCCTATGTGCTTCTAGTCAAAGGTAGTAGAGTATAGGGTGCTATTTCGGATGGAACCTTCCAATTATATTCAGGGTGCTCTTAGTACTCGTCCACGGCCCATATTAATGAAGCCtctcagaataggagtgctgatctaggatcagttataCCATTTATGATCGTAATGAATAAGACTCTGGGTACTCGGCTCTGTGCGCTCCAGCGGCTCGGAGAAGAGACTGTGAGTAACATTtcatggacagggaggacctgatcctagatcagcactcctactcagagacgctttatgaatacaggcccagttTTCCTAGTGAATACAGTACTGAGTTTGCGTACGGTCTACTTAACAGTGTTACCTGTTACCTTTTATGATACTATTCCGTTTAGGTTTATTTGTGGATCATTGTTATTGTTGGTGTGGCATATTGTTGGGATGCCCTCCTTATATTTGAgcttgattaaataaaaaaaaatctgagaaaATACAATTAAACTGAAGATGAAAAACA

Function

NR:

description
cyclin-dependent kinase 17-like

GO: NA

KEGG:

id description
K15595 CDK17, PCTK2; cyclin-dependent kinase 17

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036980058.1 False 3710 mRNA 0.49 16 53250609 53296485
XM_036980062.1 True 3701 mRNA 0.49 16 53250612 53296485

Neighbor

gene id symbol gene type direction distance location
LOC110525010 LOC106573059 coding upstream 17435 53187018 ~ 53233174 (+)
LOC110524999 LOC106573060 coding upstream 68849 53159233 ~ 53181760 (+)
LOC110524948 LOC106573061 coding upstream 100920 53080973 ~ 53149689 (+)
LOC110524927 LOC106573064 coding upstream 177861 53059953 ~ 53072748 (+)
LOC110524916 LOC106573063 coding upstream 202924 53007984 ~ 53047685 (+)
LOC110532423 LOC106561694 coding downstream 59266 53355751 ~ 53373462 (+)
LOC110525096 LOC106573053 coding downstream 102565 53399050 ~ 53422754 (+)
LOC110525151 LOC106561689 coding downstream 141049 53437534 ~ 53485553 (+)
LOC110525170 LOC106573051 coding downstream 195361 53491846 ~ 53557609 (+)
LOC110516195 LOC106581842 coding downstream 301709 53598194 ~ 53620959 (+)
G58278 NA non-coding upstream 44352 53204076 ~ 53206257 (+)
G58192 NA non-coding upstream 218656 53031123 ~ 53031953 (+)
G58230 NA non-coding upstream 253179 52997224 ~ 52997430 (+)
G58229 NA non-coding upstream 253767 52996626 ~ 52996842 (+)
LOC118964862 NA non-coding upstream 262060 52965815 ~ 52988549 (+)
G58181 NA non-coding downstream 38256 53334741 ~ 53337311 (+)
G58369 NA non-coding downstream 129055 53425540 ~ 53425822 (+)
G58371 NA non-coding downstream 130142 53426627 ~ 53426922 (+)
G58372 NA non-coding downstream 130479 53426964 ~ 53427210 (+)
G58346 LOC106561689 non-coding downstream 141101 53437586 ~ 53558274 (+)
LOC110524575 fgf3 other upstream 1799674 51449353 ~ 51451460 (+)
LOC118964841 NA other upstream 3166613 50037523 ~ 50184257 (+)
G53181 NA other upstream 4356697 48893497 ~ 48893912 (+)
G52324 NA other upstream 4867352 48380542 ~ 48383257 (+)
G52080 NA other upstream 5225651 48006674 ~ 48024958 (+)
LOC118936380 LOC106581842 other downstream 369730 53632830 ~ 53705421 (+)
G59031 NA other downstream 691655 53988140 ~ 53988597 (+)
LOC110525327 LOC106573036 other downstream 748364 54044813 ~ 54089850 (+)
G59963 NA other downstream 1424703 54721188 ~ 54721463 (+)
G61202 LOC106573044 other downstream 2609023 55905508 ~ 55923376 (+)

Expression


Co-expression Network