LOC110532423 (LOC106561694)


Basic Information

Item Value
gene id LOC110532423
gene name LOC106561694
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 53355751 ~ 53373462 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC110532423
TGTAACCCTCGCATGGGGAACCTAGCCTTGGGTTCGAGGACTACTCACCCAGTCTGTGTGTGGATCCAACTCCACAGAGTCCTACTGCTCCTACCAACAGACTTCTAGTTCTCCCCACAAGGAGTCTTCCTGCCCAGCAGTACCCAAATGCAGCAAGTGCAACGCAGCCCTCCCCCACCAGGCCCACCTAGCCACTGCCATGACCTACTCGTCCTTTGAATACCCAGATACATGGTGGCAGTCTGCAGAGAGGGTGGAGACCGAGACCCTCCAACTAGACCTGGAGACAGAGTTCTACTTCACCCACCTGATCCTGGTGTTCCGTTCCCCCCGCCTCTCTGCCATGCTGCTGGAACGTTCCCAGGGCCACGGACAGACCTGGAAGACCCTCAGGTACTTTGCCAGGGACTGTGAGGGCACCTTCGGCCTGGCCGAGGATGGGGGAGAGTGTGGCAGCCTGTACCTCCAAGTTCTCAGGAGCGTTCCCCTGTGAACACtgttttctgtctccctcttttaCTCCTGTGGCAGATCCACAGGGGGTCCACGGGAGGTGTGTGTGCAGACACAAAACAGCCGGCGACCACTGTGAGCGCTGTGCTCCCCTCTACAACGAACAGCCTTGGCAAGTTGCCAATGaAAAATGTGAGTGTAAGGAGATGACTATTGGCAAACCCAAACTCTTCTGTGCCAAGGAGTATGACTATGTGCTGAAGGTGAGGATTGTGGCGGCCCATGATCAGGGCTCCCATGCTGAGGTGGAGGTCAAGGTAAAGAAGGTCCTGTACTACAGCAGCCAGGCGAGGATCCAGAGAGGTCACATCACCCTTTTCCCAGAGACCTGGACCAACCATGGGTGCATCTGCCCCCTCAACCCAGTGGCTGTCTGA

Function

NR:

description
PREDICTED: netrin-4-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC110532423 True 890 mRNA 0.57 6 53355751 53373462

Neighbor

gene id symbol gene type direction distance location
LOC110525022 LOC106573057 coding upstream 59266 53250609 ~ 53296485 (+)
LOC110525010 LOC106573059 coding upstream 122577 53187018 ~ 53233174 (+)
LOC110524999 LOC106573060 coding upstream 173991 53159233 ~ 53181760 (+)
LOC110524948 LOC106573061 coding upstream 206062 53080973 ~ 53149689 (+)
LOC110524927 LOC106573064 coding upstream 283003 53059953 ~ 53072748 (+)
LOC110525096 LOC106573053 coding downstream 25588 53399050 ~ 53422754 (+)
LOC110525151 LOC106561689 coding downstream 64072 53437534 ~ 53485553 (+)
LOC110525170 LOC106573051 coding downstream 118384 53491846 ~ 53557609 (+)
LOC110516195 LOC106581842 coding downstream 224732 53598194 ~ 53620959 (+)
LOC118936380 LOC106581842 coding downstream 259368 53632830 ~ 53705421 (+)
G58181 NA non-coding upstream 18440 53334741 ~ 53337311 (+)
G58187 NA non-coding upstream 40766 53233535 ~ 53314985 (+)
G58278 NA non-coding upstream 149494 53204076 ~ 53206257 (+)
G58192 NA non-coding upstream 323798 53031123 ~ 53031953 (+)
G58230 NA non-coding upstream 358321 52997224 ~ 52997430 (+)
G58369 NA non-coding downstream 52078 53425540 ~ 53425822 (+)
G58371 NA non-coding downstream 53165 53426627 ~ 53426922 (+)
G58372 NA non-coding downstream 53502 53426964 ~ 53427210 (+)
G58346 LOC106561689 non-coding downstream 64124 53437586 ~ 53558274 (+)
G58840 NA non-coding downstream 213500 53586962 ~ 53587198 (+)
LOC110524575 fgf3 other upstream 1904816 51449353 ~ 51451460 (+)
LOC118964841 NA other upstream 3271755 50037523 ~ 50184257 (+)
G53181 NA other upstream 4461839 48893497 ~ 48893912 (+)
G52324 NA other upstream 4972494 48380542 ~ 48383257 (+)
G52080 NA other upstream 5330793 48006674 ~ 48024958 (+)
G59031 NA other downstream 614678 53988140 ~ 53988597 (+)
LOC110525327 LOC106573036 other downstream 671387 54044813 ~ 54089850 (+)
G59963 NA other downstream 1347726 54721188 ~ 54721463 (+)
G61202 LOC106573044 other downstream 2532046 55905508 ~ 55923376 (+)

Expression


Co-expression Network