LOC110525151 (LOC106561689)


Basic Information

Item Value
gene id LOC110525151
gene name LOC106561689
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 53437534 ~ 53485553 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021605103.2
TTGAACTCATCACCCTCGTGTTCCGCAGACCTTAAAGTGGGCGGTGTCGGAGTGCACGTTGTTTTCTTGTATTTTAGGTCTTGGAAAGGAGAAACGAGAGTGGTCAGATCAATGTGTGAAGGGTTGGTCGACATGGTGGGAGAGTACAGATGATGAAACATTGAGAACGGAACTCTAGACCGATCATAGTTCCTAAAACGGACCGCGAGACGAACACGGTGATTATGCCCAGCGCAGCAGTGAGACGTTTATCACAAGTCGAAAAATACCTCAACAGCCGGAACGATATGGCGGAACGGAGCAGTGGCGAAGGGAACTCCCGGAACATTCCGGAGTCGATGCATCACGGCAGCTTGGAGAACAACCTCGATCTGGACCTGAGCGGCATCCCAGACTCCCAACGCTACCTCGACTCCTCCCACCGCAGCCTAGACTCCTCCTACCGCTCCCTGCCCCCCGGACTCAACAGCTTGCAGCAGAAGATCCTCAGGGTGACAGAGCAACTGAAGATTGAGACGGAGTCACGAGACGACAATGTGATAGAGTACCTGAAACTGGTGAACAGTGTCGACAAGCAGCAGGTGTTTACCTTTTTAACGGTGGGGCGCATCAAGCATGTGTTTGAGAAGAAGAACCAGAAGTCAGCTCACAGCATTGCCCACATGCAGAAAAAGCTTGAGCAGTATCATAAGAAGATGAAGGACAGCAGCGAGAAGGACACCAGCTCCCAACACCACAGCATCTCTAAAGAGAGCTCAAAGGACATGCTAAGCCACACCATGAGCAACGTGAGCAGTGGTAGTGGACGACACCCACTGGACAAGATCAAGACAGTAGGGCCTGGCGTCTCGCTCTCGCCACCTTTCTTTTTCAGCAAGCCCCGGGACTTTGCCAACCTCATCAGGAACAAGTTTGGCAGTGCCGACAACATCGCTCACCTGAAGACCTACCTCGACACGCCCTCTCCCTTCCACTCTGAAGGAACTGGGCGGGCCTTGAGTGGGAGCGCCACCTTAGTGAGTGGGAAGACCCCTGCCGCCACGCCCACGCCCAAGTACACAAGCGATGACGAGTGTTCCTCGGGCACGTCCCTGTCGGCGGACAGCAACGGGAACACAATGGCTCTGGGCGTTGGCCTGGGTCTAGAAGTGGGTGTCGGGGCAGTGATGACACCAGGGCAGATCCTGGAgtctggggacagccaggagagGCTGGGCCTGACCACGGAGGAGGTTAGGGAGATCAGGGAGGCCCAGGGGCAGCTGGAGGAGGACATGGAGGGATTCAAGACCCAGTTCAAGAAAGACCACAGCTTCATCACCCAAACGCTGCAAGAGGAGAGATACAGGTGTGAGCGGTTGGAGGACCAGCTGAATGATCTGACTGAGCTCCACCAGGCCGAGACAGCCGACCTGAAACAGGAGCTGGCCAGCATTGAGGAGAGAGTGGCCTACCAAGCCTACGAGAGGGCTAGAGACATAcaggAGGCCCTAGAGTCATGCCAGACGCGGGTCTCTAAACTAGagctccagcagcagcagcaacaaacCGTACAGCTTGAGTCCCGTGATGCCAGGGTGCTTCTGGGTAAAAGTATCAACATCATGCTCGCCATCGTCACCGTGATCCTTGTATGCGTCTCCACGGCCGCCAAGTTCGCGGCACCCCTACTGCGGAGCCGTCGCCACGTGATGGGCACCTTCCTGGGCATGTGTTTGTTGGCGCTGTTCTGGAGGAACTGGGAGAATCTACAGTGTGCTGTGGAGAGGGTCCTGGTGCCAGCCTGAGGGGGGACAATAGTCTAATGCTGTCCATGTCACTCACTGCAACAAATGATCTACGGACTGATCTCAGAACTCCAACAAAACAGCCTATTGATGTAGTAAAATGCAGAAGGTGCATAATGCAAAAGAAGTCCGCTGGGGGGAAATGGAGCTAGCAAAGCATGGTCACTGACTGGTTAATCGCATCACCTAGAATAACACTGAATATCAAGACATTGTGGGGTGAATGAACACACAATAACTGACATAACAACAGAAACGACAACCACACCACTTGAGAATGTTGTAATCCTTGATCAATGCTGTTTCTTGCAATTGTAAGGTTTAATCAATGCTCCCAGAAACAAGTCTTGCCGTGTTAAGTCCATCATGAGAGACTTCAACATATAGGTTCTCCATTGGTCAGAAGAGGGGATGCTGTCCAGAACACACTACAACAAATAATTTCCAGACAGTCAGATCACGTGCATAGTGCAGAAGAATTGCGATAGAGCAAGCATGATTGGGGAAAGATAGGAGCTGGGTAAAGCATGgttactaactgactgactgttcattatacagtatattgctGGATCACAATCTCCAACGCCAtcaatacacacacgcacacacacaactcagCCTTGATGGGCGGCCCTGCCAACATTTTACCACAGAGACTACAGTCCACAATACAGGAGTCAGGGAGGTGGACATCTTGTTTAGATCTTGTATGTCTTAAGGCTTATGTCTTACAGCCAATCTTCATTCCTTCTTTATTACCTTGCCTGCAGTCAGAGGTTTGTCAGCATTCTTTTACAACTGCTGTTGACTTGGTTAGTTTACTTCTTTTATTGGatacattttaaaagtgaaaTATGTTTGATTGCTTCTTTTTTTTAACAGCCACTTGTTTGTTTTTAGgaaaggatgttctctgtttccCTCTAGATGGAGAAATGACGGGATGCTGTCTGAAGGTTTGggggatgtaaaaaaaaagaatccgattttttttcttctccatatAGAAACGTATACATACGAACAACAAATGACAGACACAGCCAAACAATGACTACATCTCATCTGCCCAGAAACagcatgctcacacccccatccctagtgcctgcattattGTTTGCCACTTAAATTGTATCAATTTGTTTTTCTCAGTCGCCCCTACTATTTCCATATTTAAATAATACCGAATGCCAATAGTTATAATTAATAGATAGAGAAAGTATTtctcagagaggaggagggactgaTAAGGTTGATTTGGCCAATTGATTGATGTTTGTTGACCTTCAAGAGGAAGTAGTGGACTCTTTGTAACACTGTCATATGAGGCTTTGGGTTCTTTTACTGTTCCTCTGAAACACTTTTTCTGTTCCAATGGGTGataggctagctagctactctagtCCAATGAGAAGCAACTGAGCATTGAGCAGCCTTACATATACTCCACAGTGGATAGAGATAAGCACTAAAAGGAGTATATTTGGGGGTCTGGGGGGTCGACTAGCACAAGGACTAGTATCTGTATGTGGACTTAACATGACAGATACAGACCATATCTAATGTTTGTTTGTTGTAATAACATTTCCTCtaatttgtttgtttgtattgACCTAGTCACGCACAGACAGGGTTGTTGTTATTTACCTGCTGctgactgtatgtacagtatgagaTTTGGGTAATACTTTATTTTACAGCACAGTTTAAGATGGTTCTAGTGTTGCAATACTCgggtaactttcccaaaatgtcCATGTTTTCCATAAATCCTGTTTTATTAGGATTCCCAATTCTCTGCTTATTCCCATTTTtattccaggaatcttccaactgtgaatttggggaaagttaccgGAATTTTAGCAATTATTACGTAATTACCGTTTTAACATTTTAATTTCTAACTATAGTACCTGCTAAacagggggtacagagatgaTTTATGTTCCTCTGTTTTGATACACCGGAAGAATTTACCTGAACATGGATTAGATTTATTACAGTCTCTTATTCATCTACAGTGAACATGGATTAGATTCATTACAGTCTCTTATTCATCTACAGTGAACATGGATTTGATTCATTACAGACTCTTATTCATCTTCAGTGAACATGGATTTGATTCATTACAGACTCTTATTCATCTTCAGTGAACATGGATTAGATTCATTACAGTCTCTTATTCATCTTCAGTGAACATGGATTAGATTCATTACAGTCTCTTATTCATCTTCACTGCACAATAATATGATTTACCTGCTCTCATACATTATGTGCCTTCTTGTATGCGACAATTCTGttaaaattaaacaaaaaaaatgtagtcAACAAACCACTCCATGATATTTGAGTGAGTGGGATATTTTGTGCTTGCCTGTCAGATATTTgcctatgattaaaaaaaaaaatttaagtcAGGAATACCACCTTAGTGGTATGGATGACAGTAACGGTCAAAATAATGAATAAACTAATGAAATAAAGTAATTATTAGTTCA
>XM_021605109.2
TGAACTCATCACCCTCGTGTTCCGCAGACCTTAAAGTGGGCGGTGTCGGAGTGCACGTTGTTTTCTTGTATTTTAGGTCTTGGAAAGGAGAAACGAGAGTGGTCAGATCAATGTGTGAAGGGTTGGTCGACATGGTGGGAGAGTACAGATGATGAAACATTGAGAACGGAACTCTAGACCGATCATAGTTCCTAAAACGGACCGCGAGACGAACACGGTGATTATGCCCAGCGCAGCAGTGAGACGTTTATCACAAGTCGAAAAATACCTCAACAGCCGGAACGATATGGCGGAACGGAGCAGTGGCGAAGGGAACTCCCGGAACATTCCGGAGTCGATGCATCACGGCAGCTTGGAGAACAACCTCGATCTGGACCTGAGCGGCATCCCAGACTCCCAACGCTACCTCGACTCCTCCCACCGCAGCCTAGACTCCTCCTACCGCTCCCTGCCCCCCGGACTCAACAGCTTGCAGCAGAAGATCCTCAGGGTGACAGAGCAACTGAAGATTGAGACGGAGTCACGAGACGACAATGTGATAGAGTACCTGAAACTGGTGAACAGTGTCGACAAGCAGCAGGTGGGGCGCATCAAGCATGTGTTTGAGAAGAAGAACCAGAAGTCAGCTCACAGCATTGCCCACATGCAGAAAAAGCTTGAGCAGTATCATAAGAAGATGAAGGACAGCAGCGAGAAGGACACCAGCTCCCAACACCACAGCATCTCTAAAGAGAGCTCAAAGGACATGCTAAGCCACACCATGAGCAACGTGAGCAGTGGTAGTGGACGACACCCACTGGACAAGATCAAGACAGTAGGGCCTGGCGTCTCGCTCTCGCCACCTTTCTTTTTCAGCAAGCCCCGGGACTTTGCCAACCTCATCAGGAACAAGTTTGGCAGTGCCGACAACATCGCTCACCTGAAGACCTACCTCGACACGCCCTCTCCCTTCCACTCTGAAGGAACTGGGCGGGCCTTGAGTGGGAGCGCCACCTTAGTGAGTGGGAAGACCCCTGCCGCCACGCCCACGCCCAAGTACACAAGCGATGACGAGTGTTCCTCGGGCACGTCCCTGTCGGCGGACAGCAACGGGAACACAATGGCTCTGGGCGTTGGCCTGGGTCTAGAAGTGGGTGTCGGGGCAGTGATGACACCAGGGCAGATCCTGGAgtctggggacagccaggagagGCTGGGCCTGACCACGGAGGAGGTTAGGGAGATCAGGGAGGCCCAGGGGCAGCTGGAGGAGGACATGGAGGGATTCAAGACCCAGTTCAAGAAAGACCACAGCTTCATCACCCAAACGCTGCAAGAGGAGAGATACAGGTGTGAGCGGTTGGAGGACCAGCTGAATGATCTGACTGAGCTCCACCAGGCCGAGACAGCCGACCTGAAACAGGAGCTGGCCAGCATTGAGGAGAGAGTGGCCTACCAAGCCTACGAGAGGGCTAGAGACATAcaggAGGCCCTAGAGTCATGCCAGACGCGGGTCTCTAAACTAGagctccagcagcagcagcaacaaacCGTACAGCTTGAGTCCCGTGATGCCAGGGTGCTTCTGGGTAAAAGTATCAACATCATGCTCGCCATCGTCACCGTGATCCTTGTATGCGTCTCCACGGCCGCCAAGTTCGCGGCACCCCTACTGCGGAGCCGTCGCCACGTGATGGGCACCTTCCTGGGCATGTGTTTGTTGGCGCTGTTCTGGAGGAACTGGGAGAATCTACAGTGTGCTGTGGAGAGGGTCCTGGTGCCAGCCTGAGGGGGGACAATAGTCTAATGCTGTCCATGTCACTCACTGCAACAAATGATCTACGGACTGATCTCAGAACTCCAACAAAACAGCCTATTGATGTAGTAAAATGCAGAAGGTGCATAATGCAAAAGAAGTCCGCTGGGGGGAAATGGAGCTAGCAAAGCATGGTCACTGACTGGTTAATCGCATCACCTAGAATAACACTGAATATCAAGACATTGTGGGGTGAATGAACACACAATAACTGACATAACAACAGAAACGACAACCACACCACTTGAGAATGTTGTAATCCTTGATCAATGCTGTTTCTTGCAATTGTAAGGTTTAATCAATGCTCCCAGAAACAAGTCTTGCCGTGTTAAGTCCATCATGAGAGACTTCAACATATAGGTTCTCCATTGGTCAGAAGAGGGGATGCTGTCCAGAACACACTACAACAAATAATTTCCAGACAGTCAGATCACGTGCATAGTGCAGAAGAATTGCGATAGAGCAAGCATGATTGGGGAAAGATAGGAGCTGGGTAAAGCATGgttactaactgactgactgttcattatacagtatattgctGGATCACAATCTCCAACGCCAtcaatacacacacgcacacacacaactcagCCTTGATGGGCGGCCCTGCCAACATTTTACCACAGAGACTACAGTCCACAATACAGGAGTCAGGGAGGTGGACATCTTGTTTAGATCTTGTATGTCTTAAGGCTTATGTCTTACAGCCAATCTTCATTCCTTCTTTATTACCTTGCCTGCAGTCAGAGGTTTGTCAGCATTCTTTTACAACTGCTGTTGACTTGGTTAGTTTACTTCTTTTATTGGatacattttaaaagtgaaaTATGTTTGATTGCTTCTTTTTTTTAACAGCCACTTGTTTGTTTTTAGgaaaggatgttctctgtttccCTCTAGATGGAGAAATGACGGGATGCTGTCTGAAGGTTTGggggatgtaaaaaaaaagaatccgattttttttcttctccatatAGAAACGTATACATACGAACAACAAATGACAGACACAGCCAAACAATGACTACATCTCATCTGCCCAGAAACagcatgctcacacccccatccctagtgcctgcattattGTTTGCCACTTAAATTGTATCAATTTGTTTTTCTCAGTCGCCCCTACTATTTCCATATTTAAATAATACCGAATGCCAATAGTTATAATTAATAGATAGAGAAAGTATTtctcagagaggaggagggactgaTAAGGTTGATTTGGCCAATTGATTGATGTTTGTTGACCTTCAAGAGGAAGTAGTGGACTCTTTGTAACACTGTCATATGAGGCTTTGGGTTCTTTTACTGTTCCTCTGAAACACTTTTTCTGTTCCAATGGGTGataggctagctagctactctagtCCAATGAGAAGCAACTGAGCATTGAGCAGCCTTACATATACTCCACAGTGGATAGAGATAAGCACTAAAAGGAGTATATTTGGGGGTCTGGGGGGTCGACTAGCACAAGGACTAGTATCTGTATGTGGACTTAACATGACAGATACAGACCATATCTAATGTTTGTTTGTTGTAATAACATTTCCTCtaatttgtttgtttgtattgACCTAGTCACGCACAGACAGGGTTGTTGTTATTTACCTGCTGctgactgtatgtacagtatgagaTTTGGGTAATACTTTATTTTACAGCACAGTTTAAGATGGTTCTAGTGTTGCAATACTCgggtaactttcccaaaatgtcCATGTTTTCCATAAATCCTGTTTTATTAGGATTCCCAATTCTCTGCTTATTCCCATTTTtattccaggaatcttccaactgtgaatttggggaaagttaccgGAATTTTAGCAATTATTACGTAATTACCGTTTTAACATTTTAATTTCTAACTATAGTACCTGCTAAacagggggtacagagatgaTTTATGTTCCTCTGTTTTGATACACCGGAAGAATTTACCTGAACATGGATTAGATTTATTACAGTCTCTTATTCATCTACAGTGAACATGGATTAGATTCATTACAGTCTCTTATTCATCTACAGTGAACATGGATTTGATTCATTACAGACTCTTATTCATCTTCAGTGAACATGGATTTGATTCATTACAGACTCTTATTCATCTTCAGTGAACATGGATTAGATTCATTACAGTCTCTTATTCATCTTCAGTGAACATGGATTAGATTCATTACAGTCTCTTATTCATCTTCACTGCACAATAATATGATTTACCTGCTCTCATACATTATGTGCCTTCTTGTATGCGACAATTCTGttaaaattaaacaaaaaaaatgtagtcAACAAACCACTCCATGATATTTGAGTGAGTGGGATATTTTGTGCTTGCCTGTCAGATATTTgcctatgattaaaaaaaaaaatttaagtcAGGAATACCACCTTAGTGGTATGGATGACAGTAACGGTCAAAATAATGAATAAACTAATGAAATAAAGTAATTATTAGTTCA

Function

NR:

description
transmembrane and coiled-coil domains protein 3-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021605103.2 False 4291 mRNA 0.45 7 53437534 53485553
XM_021605109.2 True 4272 mRNA 0.45 7 53437535 53485553

Neighbor

gene id symbol gene type direction distance location
LOC110525096 LOC106573053 coding upstream 14780 53399050 ~ 53422754 (+)
LOC110532423 LOC106561694 coding upstream 64072 53355751 ~ 53373462 (+)
LOC110525022 LOC106573057 coding upstream 141049 53250609 ~ 53296485 (+)
LOC110525010 LOC106573059 coding upstream 204360 53187018 ~ 53233174 (+)
LOC110524999 LOC106573060 coding upstream 255774 53159233 ~ 53181760 (+)
LOC110525170 LOC106573051 coding downstream 6293 53491846 ~ 53557609 (+)
LOC110516195 LOC106581842 coding downstream 112641 53598194 ~ 53620959 (+)
LOC118936380 LOC106581842 coding downstream 147277 53632830 ~ 53705421 (+)
LOC118964886 NA coding downstream 199848 53685401 ~ 53686098 (+)
LOC110525273 LOC106561706 coding downstream 401367 53886920 ~ 53903845 (+)
G58372 NA non-coding upstream 10324 53426964 ~ 53427210 (+)
G58371 NA non-coding upstream 10612 53426627 ~ 53426922 (+)
G58369 NA non-coding upstream 11712 53425540 ~ 53425822 (+)
G58181 NA non-coding upstream 100223 53334741 ~ 53337311 (+)
G58187 NA non-coding upstream 122549 53233535 ~ 53314985 (+)
G58840 NA non-coding downstream 101409 53586962 ~ 53587198 (+)
G58843 NA non-coding downstream 104360 53589913 ~ 53590161 (+)
G58845 NA non-coding downstream 105328 53590881 ~ 53591113 (+)
G58849 NA non-coding downstream 111480 53597033 ~ 53597391 (+)
G58855 NA non-coding downstream 112648 53598201 ~ 53634505 (+)
LOC110524575 fgf3 other upstream 1986599 51449353 ~ 51451460 (+)
LOC118964841 NA other upstream 3353538 50037523 ~ 50184257 (+)
G53181 NA other upstream 4543622 48893497 ~ 48893912 (+)
G52324 NA other upstream 5054277 48380542 ~ 48383257 (+)
G52080 NA other upstream 5412576 48006674 ~ 48024958 (+)
G59031 NA other downstream 502587 53988140 ~ 53988597 (+)
LOC110525327 LOC106573036 other downstream 559296 54044813 ~ 54089850 (+)
G59963 NA other downstream 1235635 54721188 ~ 54721463 (+)
G61202 LOC106573044 other downstream 2419955 55905508 ~ 55923376 (+)

Expression


Co-expression Network