LOC110525273 (LOC106561706)


Basic Information

Item Value
gene id LOC110525273
gene name LOC106561706
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 53886920 ~ 53903845 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036989706.1
ATGGggttacctgacttgcctagGGAGGAGGAGTCTATCCAGCTGGACGGGCTGAACGCAGCTCAGATAAAAGAGATCAGAGAGAAATCTGAGAAGCATGTCTTCCAGGCAGAGGTCAACCGCATGATGAAGCTTATCATCAACTCACTCTACAAGAACAAGGAGATCTTCTTGAGGGAGTTGATATCCAACGCCTCTGATGCTCTGGATAAAACCAGAATGATGTCTCTGACCAACGAGGATGCACTGGCAGCCAATGAGGAGCTCACCATCAAGATCAAGATGGACAAAGAGAAGAACATGCTCCACATCACTGACACGGGCATCGGCATGACCAAAGAGGACTTGGTCAAGAACCTGGGTACCATCGCCAAGTCGGGCACCAGCGAGTTCCTCAACAAGATGACGGAGATTGAAACCGAGGGCCAGTCCACCTCTGAGCTTATTGGCCAGTTCGGTGTGGGCTTTTACTCTACCTTCCTGGTTGCCGACAAGGTGATCGTGTCTTCAAAGCACAACAACGGCACACAGCACATCTGGGAGTCTGACTCCAATGAGTTTTCTGTCATTGAGGACCCTCGCGGGGATACGCTCGGCAGGGGCACCAGCATCACGTTGGTGATGAAGGAGGAGGCTACAGACTACCTGGAGCTGGAAACCATCAAGAACCTGGTCAAGAAATACTCGCAGTTCATCAACTTCCCCATCTACATCTGGGCCAGCAAGACAGAGACTGTTGAGGAGCCCATCGAGGACACCGAGGTGAAGGATGACACTGAGgatgaggtagaggtggaggaagaggaggacaagcCCAAGAAGGTTGAGAAGACCGTGTGGGACTGGGAGCTGATGAACGACGTCAAGCCTATCTGGACGAGACCAGCCAAAGAAGTAGAGGAGGATGAGTACAAAGCCTTCTACAAGACTTTCTCTAAGGACACAGATGAGCCCCTCTCCCACATCCACTTCACAGCCGAGGGTGAGGTCACCTTCAACTCCATCCTGTTTGTCCCCGTTGCTGCCCCCAGGGGCATGTTCGACGAGTATGGAACCAAGAAGAACGACTTCATCAAGCTCTTTGTCCGTAGAGTCTTCATCACTGATGATTTCAATGACATGATGCCCAAATACCTGAACTTTGTCAGGGGAGTGGTGGACTCTGATGATCTGCCACTGAATGTGTCAAGAGAAACCCTGCAGCAGCACAAGTTGCTCAAGGTCATCCGTAAGAAGCCGGTGCGTAAGACCCTGGACATGATAAAGAAGATTGCAGAGGAGCAGTACAATGAGAAGTTCTGGAAGGAGTTTGGCACCAACATTAAACTGGGTGTGATCGAGGACCACTCCAACAGGACACGTCTGGCCAAACTGCTGCGTTTTCAGACCTCCAACAGCGACACGGTGCTGGCCAGCCTGGAGCAGTACGTAGAGAGGATGAAGGACAAGCAGGACAAGATCTACTTCATGGCCGGGACCAGCCGCAGGGAGGCTGAGTCGTCTCCCTTTGTAGAGAGTCTGTTGAAGAAGGGTTATGAGGTAATCTACCTGACAGAACCAGTGGATGAGTACTGTGTCCAGGCCTTGCCAGAGTTTGACGGTAAGCGCTTCCAGAATGTGGCCAAGGAGGGCATTAAGTTTGACGAGAGCGACAAGGCCAAGGAGACCAGGGAGGTCCTGGAGAAGGAGTACGAACCTCTCACCACCTGGATGAAGGACAGCGCCCTCAAGGACAAGATTGAGAAGGCTATCCTGTCCCAGAGGCTGACTAAATCTCCCTGTGCCCTGGTAGCCAGCCAGTACGGCTGGTCTGGTAACATGGAGAGGATCATGAAGGCACAGGCCTACCAGACAGGGAAAGACATCTCCACAAATTATTATGCAAGCCAGAAGAAAACATTAGAAATCAACCCAAAGCACCCTCTCATCAAGGAAATGCTGAAACGCATTTCTACTGATGCCAAGGACCAGACTGCCTCAGACCTGGCCATGGTGTTGTTTGAGACGGCCACGCTGCGTTCAGGCTACCAGCTTCAAGACACCAAGGCCTATGGAGACAGGATTGAACGCATGCTGCGGCTCAGTATGAACGTAGATCTCAACGAACAGGTTGAGGAGCCAGAGGAGGAGCCTGAAGAGGCGGCAGAGGCTGAGGAAGAAGAAGAAATTCAAGATGAGGATGAAGTGGTAACAGATAAAGATGAATTATAAAGCATTAAATGAGTGTGGGTGTCATGATGGACCTATCCTGGAGCTGAGCCACAACCAAGACCACCCATGGCTAACCAAGTCCTAGCCTTGAAATTCAGACTGAATTTAGCTTCATTCTGTACGTTTCTCTCCATTATCTATGAATTAGTCATTACGACAGTAAAACCATGTGATTCATTCTGGATAGCCAAGACCACCACCAGCTGGCCAAGAACACCAACGGTCAGTGAAGACTAGCCAGGTCCCAGATCGGTTTGTGTGGTCTTGCCCAACAGATCAGGCTAAGTCAAGACATTGATGGCCATTGGCCACCTTTCACTCACTCGGGAAGGTCCTGATCGGATTTTTTTATAAGGCTTTGGTTTTGTTTTGTTGCGTTCCTCATGATTGTAAATTTGTTAATATTTCACTGAGCTGTCTTTGGGAAAGATGTGATCGATACTGTCACTTGATCccattaaataaatatttattggGAAAAGAGTGa
>TU65567
GTATGAACGTAGATCTCAACGAACAGGTTGAGGAGCCAGAGGAGGAGCCTGAAGAGGCGGCAGAGGCTGAGGAAGAAGAAGAAATTCAAGATGAGGATGAAGTGGTAACAGATAAAGATGAATTATAAAGCATTAAATGAGTGTGGGTGTCATGATGGACCTATCCTGGAGCTGAGCCACAACCAAGACCACCCATGGCTAACCAAGTCCTAGCCTTGAAATTCAGACTGAATTTAGCTTCATTCTGTACGTTTCTCTCCATTATCTATGAATTAGTCATTACGACAGTAAAACCATGTGATTCATTCTGGATAGCCAAGACCACCACCAGCTGGCCAAGAACACCAACGGTCAGTGAAGACTA

Function

GO:

id name namespace
GO:0006950 response to stress biological_process
GO:0006457 protein folding biological_process
GO:0005524 ATP binding molecular_function
GO:0051082 unfolded protein binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036989706.1 False 2698 mRNA 0.50 15 53886920 53903845
TU65567 True 364 lncRNA 0.47 2 53903143 53903594

Neighbor

gene id symbol gene type direction distance location
LOC118936380 LOC106581842 coding upstream 181499 53632830 ~ 53705421 (+)
LOC118964886 NA coding upstream 200822 53685401 ~ 53686098 (+)
LOC110516195 LOC106581842 coding upstream 266087 53598194 ~ 53620959 (+)
LOC110525170 LOC106573051 coding upstream 329311 53491846 ~ 53557609 (+)
LOC110525151 LOC106561689 coding upstream 401367 53437534 ~ 53485553 (+)
LOC110525287 LOC106573038 coding downstream 10083 53913928 ~ 53938476 (+)
LOC110525297 LOC106573037 coding downstream 51950 53955795 ~ 53966503 (+)
LOC110525327 LOC106573036 coding downstream 140968 54044813 ~ 54089850 (+)
LOC118964411 NA coding downstream 338976 54242821 ~ 54249212 (+)
LOC110525344 pta1 coding downstream 379094 54282939 ~ 54297286 (+)
G58964 NA non-coding upstream 32505 53814648 ~ 53854415 (+)
G58963 NA non-coding upstream 73491 53813074 ~ 53813429 (+)
G58962 NA non-coding upstream 74551 53812083 ~ 53812369 (+)
G58909 LOC106581842 non-coding upstream 121508 53765180 ~ 53765412 (+)
G58907 NA non-coding upstream 126050 53760659 ~ 53760870 (+)
G59016 NA non-coding downstream 51000 53954845 ~ 53955147 (+)
G58993 NA non-coding downstream 63228 53967073 ~ 53969548 (+)
G58992 NA non-coding downstream 65777 53969622 ~ 53971233 (+)
G59021 NA non-coding downstream 69543 53973388 ~ 53973959 (+)
G59024 NA non-coding downstream 72453 53976298 ~ 53976613 (+)
LOC110524575 fgf3 other upstream 2435985 51449353 ~ 51451460 (+)
LOC118964841 NA other upstream 3802924 50037523 ~ 50184257 (+)
G53181 NA other upstream 4993008 48893497 ~ 48893912 (+)
G52324 NA other upstream 5503663 48380542 ~ 48383257 (+)
G59031 NA other downstream 84295 53988140 ~ 53988597 (+)
G59963 NA other downstream 817343 54721188 ~ 54721463 (+)
G61202 LOC106573044 other downstream 2001663 55905508 ~ 55923376 (+)
G61284 LOC106573044 other downstream 2115631 56019476 ~ 56030371 (+)

Expression


Co-expression Network