LOC110525287 (LOC106573038)


Basic Information

Item Value
gene id LOC110525287
gene name LOC106573038
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 53913928 ~ 53938476 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021605298.2
AGATGCTGAGTCCAAAAAATTCAGAGCCATTTTCATTCAGCACATTGAAAGGACTCTCTGCATTGCATGGGGATTATAAAACATTCCCCGGGCAATTAAGCGCATATCTCAgtaaaaaaaatatctttattttgTTTTGAGTAGAATTGAACAGAATTCTTTCATTTGTTGGAAgcacaaatatatacattttattcGTATTTCTCATAGATTTGACATCAGGAATGAGTATAGAAATTCCTGAAGGATTGACGGAGCTGTTGCAGAGCTTTACCGTGGAAGTGCTGAGGAATCAGCCGGGAGATTTGCTCGAGTTCGCTTTGCAGTATTTCACCCAACTGAAGGACAGTGAAATTAGAGGAGCCGCGTTTGGCAATGACCAAAATTCGGCCACGAGACCCAGTGGGAAAGCGGTCAATTTCATTGAGGAAGCCATGCAGATTGATTCTGaaaatggagaggaggagagtgacgaCGAGGAATTCACAGCTCCTGTGATGAGTCGATTTATTAGAAGAGCATCAGTGTGTGCGGAGGCATTCAACCCTGATGAAGACGAGGAGGACAAAGAGCAGAGGCTTTCCCAGGTGACCCATCCTAAAACAGACGAGCAGAGGCAAAGACTACAGGAGGCCTGCAGAGATATCCTCCTGTTTAAAAACCTGGACCCGGAACAATTTTCCCAAGTACTTGATGCCATGTTTGAGAAGTTATTTGAGGTAGGAGAGCACATCATAGATCAAGATGACGATGGGGATAACTTCTATGTCATAGAAAGagGGATATTTGATATCTGCATGAGGGTTGATGGCATTGAGAAGACTGTGGGAGCCTATGATAACCGGGGGAGCTTTGGAGAGCTGGCCCTGATGTACAACACCCCCAGGGCTGCTACCATCATAGCCACCTCGCCCGGAGCTCTCTGGTGCCTGGATCGTCTGACATTCAGGAGGATCATTGTAAAGAACAACGCGTTGAAGAGGAGACTTTATGAGGAGTTCATTGAATCACTTCCATTCCTTACATCACTAGAGCTTTCAGAGAGAATGAAAGTAGTGGACGTGCTGTCTTCTAAACCATTCAGCGATGAAGAACAGATCATCTCTCAGGGTGATCTAGCAGATTGTTTTTATATAGTTGAATCTGGTCAAGTTAGAATCACCATGAAAAGAAGCAGGACGAAAAAAGACCAAGAGGATGAGGAGGTCGATATAGCCACGTGCTCAAGAGGGCAGTACTTTGGAGAACTGGCTTTGGTCACGAACAAACCCAGAGCTGCTTCAGCTTTTGCTGTGGGAAGTGTTAAATGTTTAGTTATGGATGTCCAGGCATTTGAGAGGTTGCTGGGCCCCTGCATGGACATCATGAAGAGAAACATTGCAAATTACGAAGATCAGCTGGTCACGTTGTTTGGAAATAGCACCACTGACATTGATGGAAAAAACCTATGAAATCCAGAAACGGAAAAAAGACTAAGTGAGATGCACTATGAAGAAGATGTGAAAAACCAggataacactttacttgacacccagcatcATAACACGTTATGACATGGTCATAAACATGTCACATGTCATAAAAGCTGACGTAACATGTAATAACATGGtcataatactgtcatgacccatataattacacctgttgtgacatatattgcgttattttatggctggttatgacacctacataagaatgtttttgttttttccctgccaagaagcttccttttttttgttgtctctGTCATATTTTAAACAAATTGCAGAAAATGCACTTTATGACACTGTAATGAAGCATTATGCCCATCCTGTGTCATTTTAATCGGACTAAGAAAATACTCTTTATGACCCTGTGAAGAAGCATTATGACtatcataatcatataagccagacaggcctatcacgtacatgcccttatgtcagtcatcagtcaaaagggtgtcttgtcctgctcctgaaatctgctcctgtaTTCAACTCAGTCATCAGCAACAAAGCATTGGGTAGggatgtctgacatcaatgtgtggaCAGTTACAATGATAATTGAATATGGTCAATTTCATAAAATGATAtataacataaacatactgttgacaagcaagctatggtgtaatggaatgttttgccttgtgtggtaggttttgtgggttttaacactcttatgtaggtgtcataaccagccataaaataatgcaatatatgtcacaacgggtctaaatatgtgtcatgacagtgttacaGCTGTTATGACATAATGACGCTGGGTGTCAAATAAAGTTGCCGAAACCAGTGGGTAGTATTGTTTTCCGTTCAGAAAATGTGAAACACAGTATGTTACCATTAGTGATTTAGATAGGGTAAGACAAAATGTGTACGTTTGATTCCAGACGACACAATGGTATGTTTTAAAGGATTTTGCCTGGGAGTAATATTTTTATTGAAAGAAAGATCCGTGTTAAatccaaaatgtaaatgttaatTTGTTCTGTCCTCAACTTTTTCCTCTTAGATTTTCTACAAGTGTGCATTTTATTGAATTTATCACATTTTGACACTGTTTGTATAATGATCACTATAACGTTATAGATGATATATAAATTGTCCTTTCAAATATTCTGATATCATATTTCATCATGTGCCAAAGGCCATTCAAATCCTTGTTAGATTATGATGGTGTCATCATAACGTCACAGTAATTATCGCATTTCACAGTTAAGAGTTTCTTGTTAATAATTTGATATTCTCATGTTGACGTATCTTTTAGCAAGGGGGGGATCATGCATTTAATAGGATACAGAAGGGAACTAGGTCCCTTTGTTTCAACATGGTGGTAAGAACAAAACAATCTTGTCATCAGAAAATAAGGGAAAAAGAGATCTTCTTTCTACATCAGAGAATGTAAATTTACTTATGGAAGCAGTAGTCCTTTTTTTCATAGCAAATGTGTCTCCTCAAACATGTGATTCAACTCCCTGAACATGTCTGTGAACAAACTGTAATACATTATTCACTGTGTGCTTTAAGAAACAGTTAATAATGCCATACATTTG

Function

NR:

description
unnamed protein product

GO: NA

KEGG:

id description
K04739 PRKAR; cAMP-dependent protein kinase regulator

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021605298.2 True 3055 mRNA 0.39 11 53913928 53938476

Neighbor

gene id symbol gene type direction distance location
LOC110525273 LOC106561706 coding upstream 10083 53886920 ~ 53903845 (+)
LOC118936380 LOC106581842 coding upstream 208507 53632830 ~ 53705421 (+)
LOC118964886 NA coding upstream 227830 53685401 ~ 53686098 (+)
LOC110516195 LOC106581842 coding upstream 293095 53598194 ~ 53620959 (+)
LOC110525170 LOC106573051 coding upstream 356319 53491846 ~ 53557609 (+)
LOC110525297 LOC106573037 coding downstream 17319 53955795 ~ 53966503 (+)
LOC110525327 LOC106573036 coding downstream 106337 54044813 ~ 54089850 (+)
LOC118964411 NA coding downstream 304345 54242821 ~ 54249212 (+)
LOC110525344 pta1 coding downstream 344463 54282939 ~ 54297286 (+)
LOC110525380 LOC106573028 coding downstream 481946 54420422 ~ 54444532 (+)
G58964 NA non-coding upstream 59513 53814648 ~ 53854415 (+)
G58963 NA non-coding upstream 100499 53813074 ~ 53813429 (+)
G58962 NA non-coding upstream 101559 53812083 ~ 53812369 (+)
G58909 LOC106581842 non-coding upstream 148516 53765180 ~ 53765412 (+)
G59016 NA non-coding downstream 16369 53954845 ~ 53955147 (+)
G58993 NA non-coding downstream 28597 53967073 ~ 53969548 (+)
G58992 NA non-coding downstream 31146 53969622 ~ 53971233 (+)
G59021 NA non-coding downstream 34912 53973388 ~ 53973959 (+)
G59024 NA non-coding downstream 37822 53976298 ~ 53976613 (+)
LOC110524575 fgf3 other upstream 2462993 51449353 ~ 51451460 (+)
LOC118964841 NA other upstream 3829932 50037523 ~ 50184257 (+)
G53181 NA other upstream 5020016 48893497 ~ 48893912 (+)
G52324 NA other upstream 5530671 48380542 ~ 48383257 (+)
G59031 NA other downstream 49664 53988140 ~ 53988597 (+)
G59963 NA other downstream 782712 54721188 ~ 54721463 (+)
G61202 LOC106573044 other downstream 1967032 55905508 ~ 55923376 (+)
G61284 LOC106573044 other downstream 2081000 56019476 ~ 56030371 (+)

Expression


Co-expression Network