LOC110525297 (LOC106573037)


Basic Information

Item Value
gene id LOC110525297
gene name LOC106573037
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 53955795 ~ 53966503 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036980382.1
CCCACCAATAACGATTAGAGATTAACTTTACTGACGTTTTTATCCACCAATAGATGACCGGTTTTGGAAGTATTCCTACCCCTTCAATGAAGCCAGAGAGTTACTTGATGGCGACAGgtttgTGGCTGTCTACAGACTTTCCAGCTGACATGGCGTAATATGTTATGGGAAGTTAATAAGACTGAACAAGTTGAGGAAAACAAGATGGATGCAAATAGAATGGAAGACTCTTTTGATCTTCTGAAATGCAATGAGGCTCTGTCCTCATCACCTGGCTGCCCCCCTACTCCCATGGAGTATGATGACCTGCCAGAGCTGCAGGAGGTAGAGGAGAACCAGTCCTCTCTGGTGCTGTTCCATGTGGGAACTGGGGTGTCACATCAGGACTGTATAGCTGGTTACCCTCACACCAATTGGCTGACTGAGCTAGCTAACATCGCCACCAGCCCTCAGAGCCCCCTACTGCAGGAGCCTCCTCCCATCAAGAGGTCGTCTCCTATGCACATCTTTGCCACCAGTCGTAGTTTACATTCTTACGCCCGACCTCCCCTGGCTAGCAGTGCACCCAGCCCCTCTAGGGGTCACCTTAGGGAGCGCAGCAGACGTGTCAGAGCCAGCAGTGAGTCAGAGTCTGGTGTGTTCTCTATGTCATCATTCTCTGATGATGAGGACATGGGTTGGTCTAACTCCTGGCCCTTAACTGCCTGGCACTGTTTCCTGAAAGGCACCCGGTTGCGGTTCCACAGGGGTTCTAACAAGGAGTGGCAAGAGGCTGAGGACCTGGGAGACTCTGATGACGAGTCAGATGATGATGAGAGAATAATGCCGTCCACTGCCCGAAAGAGCTACGGTTCGGAAGGTCTGAAGCTAGTGGCCCACGAGGAGAACGTGTCGTACGGCCAGGCTGTCCTCAAACTCACCTTTGACCCCGGCTCGCCAGAAGATGGCCTCTTAACGGCGGAGTGCAGATTTGATCACCCCTTTTTTGTGAAAAACAAAGGCTGGTCCTCGTTCTATCCCAGCCTGACGGTGGTGCAGCACGGTATCCCCTGCTATGAGATGCAGGTGGGGGACCTATGTCTTCCTCCAGGCCACAGAGACTCCATAAACTGTGACGACTCTGTTGTCTTCGACACCTTCAGGAGTTATGACTTCACCCCTCTGGACTCTTCAGCTGTCTATGTGCTGAGCAGCATGGCCAGGCAGCGTAGGACCTCCCAGTCCAGCAGTGGCGCTGTCTCCCCTGACCCAGAGAAACTCTCCAGTtccttccacccctcctccaCCAGCAAATCAAACAGGAGCAATACCTCAGGGACAGCCCCTGGCGGGGCCACACCCACCAAATGCAAGCGGCCAATGAACGCCTTCATGCTCTTCGCTAAGAAGTACAGGTTGGAGTACACACAGATGTACCCTGGGAAGGATAACAGAGCCATCAGTGTAATCCTGGGTGATAAGTGGAAGAAGATGAAGAACGAGGAAAGGAGGATGTACACCATGGAGGCCAAGGCTCTGGCTGACGAGCAGAAGAGACTCAACCCTGACTGCTGGAAACGCAAGAGAACCAACTCAggGTCCCAGCACCAATAGATGGCCTGGTGAACAGACCGACCAGGTGAACAGACCGACCAGGCGACCCCACTAGCctctctagcctggtcccagatctgtttgtgctgtatagccaactaTGGTCGTTGGACcataagacagcacaaacagacctggaaccaggctactctctctctctgctcacctGTCAAATTGATGAGACATAACTGTGATGCTGAATACACTTGCTTTTATAACTAAGAGACCTTATAGATAGGCCTACAAGATAAAACAACAACTATGAACTATATATTAAAAAGCAGGTCATAAAGTGTAACTAACCGTGCTTATATTTTCTTACATTTTAAAATGACAAAAGATGCCTTGTTATTCCTCTATAAAAAAAGGAAAGGCTCAGTTTTATTTCTTCAGGTAATTTCATATTTCGAGGCATGAAACCTTGAGatcagggttgcaaaattctggtaactttccaAAGAttccccaggttttccagaaattcaGGTTGAAAGattcccagaatcaggagggTATAAGCAAGAAAtccagaatcctccaaccaggaatTCTGGAAAACTTGAGAATTTTGGTAGAAATACTGGAAATTGAGAATCCTACTTGAGACCCAGTGGTGCTAAGTTCGGTTAAGGAAGGAGGAGCAGTGATACAAAAGTTATATTTttaattgtaaaataaataaggGGGATTTTAAATAgctttggtaacactttattttaagggtcCATAATAAAGCATTTATAAGGCATTTACAAACCGCTTGCTCATCATTTATTAATcatgcaggaatgtctaccaatggcatgtccatctttttgtgagaaattacactggtcactcaaaatatttataaaatattaaTAAAGTATAAATAGTGCTCACTGGACTGCAAAAATACTTTACTAATTATTAGTAAATGGTTTACAAATGTGGGcgtaatgattaataaatggtgACCACACAATTTATAACTGCCTTATTAAATGGTTTAATACGGAACCTTAAAATTGTGTTTTTTCTCTTCTCAGCTGTAGTTCATATTGACTTATATTTGTACAACTCAATATATTGCACAGATTGATAAAGCCTTTCATGCATTGTGTCATacagtacatgaccaaaagta
>XM_036980387.1
TTTTTATCCACCAATAGATGACCGGTTTTGGAAGTATTCCTACCCCTTCAATGAAGCCAGAGAGTTACTTGATGGCGACAGTGGCTGTCTACAGACTTTCCAGCTGACATGGCGTAATATGTTATGGGAAGTTAATAAGACTGAACAAGTTGAGGAAAACAAGATGGATGCAAATAGAATGGAAGACTCTTTTGATCTTCTGAAATGCAATGAGGCTCTGTCCTCATCACCTGGCTGCCCCCCTACTCCCATGGAGTATGATGACCTGCCAGAGCTGCAGGAGGTAGAGGAGAACCAGTCCTCTCTGGTGCTGTTCCATGTGGGAACTGGGGTGTCACATCAGGACTGTATAGCTGGTTACCCTCACACCAATTGGCTGACTGAGCTAGCTAACATCGCCACCAGCCCTCAGAGCCCCCTACTGCAGGAGCCTCCTCCCATCAAGAGGTCGTCTCCTATGCACATCTTTGCCACCAGTCGTAGTTTACATTCTTACGCCCGACCTCCCCTGGCTAGCAGTGCACCCAGCCCCTCTAGGGGTCACCTTAGGGAGCGCAGCAGACGTGTCAGAGCCAGCAGTGAGTCAGAGTCTGGTGTGTTCTCTATGTCATCATTCTCTGATGATGAGGACATGGGTTGGTCTAACTCCTGGCCCTTAACTGCCTGGCACTGTTTCCTGAAAGGCACCCGGTTGCGGTTCCACAGGGGTTCTAACAAGGAGTGGCAAGAGGCTGAGGACCTGGGAGACTCTGATGACGAGTCAGATGATGATGAGAGAATAATGCCGTCCACTGCCCGAAAGAGCTACGGTTCGGAAGGTCTGAAGCTAGTGGCCCACGAGGAGAACGTGTCGTACGGCCAGGCTGTCCTCAAACTCACCTTTGACCCCGGCTCGCCAGAAGATGGCCTCTTAACGGCGGAGTGCAGATTTGATCACCCCTTTTTTGTGAAAAACAAAGGCTGGTCCTCGTTCTATCCCAGCCTGACGGTGGTGCAGCACGGTATCCCCTGCTATGAGATGCAGGTGGGGGACCTATGTCTTCCTCCAGGCCACAGAGACTCCATAAACTGTGACGACTCTGTTGTCTTCGACACCTTCAGGAGTTATGACTTCACCCCTCTGGACTCTTCAGCTGTCTATGTGCTGAGCAGCATGGCCAGGCAGCGTAGGACCTCCCAGTCCAGCAGTGGCGCTGTCTCCCCTGACCCAGAGAAACTCTCCAGTtccttccacccctcctccaCCAGCAAATCAAACAGGAGCAATACCTCAGGGACAGCCCCTGGCGGGGCCACACCCACCAAATGCAAGCGGCCAATGAACGCCTTCATGCTCTTCGCTAAGAAGTACAGGTTGGAGTACACACAGATGTACCCTGGGAAGGATAACAGAGCCATCAGTGTAATCCTGGGTGATAAGTGGAAGAAGATGAAGAACGAGGAAAGGAGGATGTACACCATGGAGGCCAAGGCTCTGGCTGACGAGCAGAAGAGACTCAACCCTGACTGCTGGAAACGCAAGAGAACCAACTCAggGTCCCAGCACCAATAGATGGCCTGGTGAACAGACCGACCAGGTGAACAGACCGACCAGGCGACCCCACTAGCctctctagcctggtcccagatctgtttgtgctgtatagccaactaTGGTCGTTGGACcataagacagcacaaacagacctggaaccaggctactctctctctctgctcacctGTCAAATTGATGAGACATAACTGTGATGCTGAATACACTTGCTTTTATAACTAAGAGACCTTATAGATAGGCCTACAAGATAAAACAACAACTATGAACTATATATTAAAAAGCAGGTCATAAAGTGTAACTAACCGTGCTTATATTTTCTTACATTTTAAAATGACAAAAGATGCCTTGTTATTCCTCTATAAAAAAAGGAAAGGCTCAGTTTTATTTCTTCAGGTAATTTCATATTTCGAGGCATGAAACCTTGAGatcagggttgcaaaattctggtaactttccaAAGAttccccaggttttccagaaattcaGGTTGAAAGattcccagaatcaggagggTATAAGCAAGAAAtccagaatcctccaaccaggaatTCTGGAAAACTTGAGAATTTTGGTAGAAATACTGGAAATTGAGAATCCTACTTGAGACCCAGTGGTGCTAAGTTCGGTTAAGGAAGGAGGAGCAGTGATACAAAAGTTATATTTttaattgtaaaataaataaggGGGATTTTAAATAgctttggtaacactttattttaagggtcCATAATAAAGCATTTATAAGGCATTTACAAACCGCTTGCTCATCATTTATTAATcatgcaggaatgtctaccaatggcatgtccatctttttgtgagaaattacactggtcactcaaaatatttataaaatattaaTAAAGTATAAATAGTGCTCACTGGACTGCAAAAATACTTTACTAATTATTAGTAAATGGTTTACAAATGTGGGcgtaatgattaataaatggtgACCACACAATTTATAACTGCCTTATTAAATGGTTTAATACGGAACCTTAAAATTGTGTTTTTTCTCTTCTCAGCTGTAGTTCATATTGACTTATATTTGTACAACTCAATATATTGCACAGATTGATAAAGCCTTTCATGCATTGTGTCATacagtacatgaccaaaagta
>XM_021605334.2
GGCGACAGgtttggtaaaataacagatttcTAAGAAACAAACGTCTAACTAATCTTGAGAAATAAGCAGTGTAATTTTCTTTATTCAGCGCGTATAGTTTGGTGGAGTGGGACAGTTGTCATTCTACCGTTCGATGTCGATTGACAATTTATTCTAGATATATTTTGTTCATTGTTATGTTTGTTATTTTGGTTGTAACATTAGCTTGCTAGGCTAGCAGCTTGCTAGCTATATATCAATATAGTGACAAATACAGCCTGCTTTAAAGGTAGTAAAACAATGTTTCGGGAAAAAACTTCGGACTCGATGTACATTTTCGGTTCATTCATTTGACAATCTCGAACAGTGGGGCGCAAGCGGTGTCGTGTCTGAACTTGTTGACATTCTTTTGTTTACAATGGCTGTCTACAGACTTTCCAGCTGACATGGCGTAATATGTTATGGGAAGTTAATAAGACTGAACAAGTTGAGGAAAACAAGATGGATGCAAATAGAATGGAAGACTCTTTTGATCTTCTGAAATGCAATGAGGCTCTGTCCTCATCACCTGGCTGCCCCCCTACTCCCATGGAGTATGATGACCTGCCAGAGCTGCAGGAGGTAGAGGAGAACCAGTCCTCTCTGGTGCTGTTCCATGTGGGAACTGGGGTGTCACATCAGGACTGTATAGCTGGTTACCCTCACACCAATTGGCTGACTGAGCTAGCTAACATCGCCACCAGCCCTCAGAGCCCCCTACTGCAGGAGCCTCCTCCCATCAAGAGGTCGTCTCCTATGCACATCTTTGCCACCAGTCGTAGTTTACATTCTTACGCCCGACCTCCCCTGGCTAGCAGTGCACCCAGCCCCTCTAGGGGTCACCTTAGGGAGCGCAGCAGACGTGTCAGAGCCAGCAGTGAGTCAGAGTCTGGTGTGTTCTCTATGTCATCATTCTCTGATGATGAGGACATGGGTTGGTCTAACTCCTGGCCCTTAACTGCCTGGCACTGTTTCCTGAAAGGCACCCGGTTGCGGTTCCACAGGGGTTCTAACAAGGAGTGGCAAGAGGCTGAGGACCTGGGAGACTCTGATGACGAGTCAGATGATGATGAGAGAATAATGCCGTCCACTGCCCGAAAGAGCTACGGTTCGGAAGGTCTGAAGCTAGTGGCCCACGAGGAGAACGTGTCGTACGGCCAGGCTGTCCTCAAACTCACCTTTGACCCCGGCTCGCCAGAAGATGGCCTCTTAACGGCGGAGTGCAGATTTGATCACCCCTTTTTTGTGAAAAACAAAGGCTGGTCCTCGTTCTATCCCAGCCTGACGGTGGTGCAGCACGGTATCCCCTGCTATGAGATGCAGGTGGGGGACCTATGTCTTCCTCCAGGCCACAGAGACTCCATAAACTGTGACGACTCTGTTGTCTTCGACACCTTCAGGAGTTATGACTTCACCCCTCTGGACTCTTCAGCTGTCTATGTGCTGAGCAGCATGGCCAGGCAGCGTAGGACCTCCCAGTCCAGCAGTGGCGCTGTCTCCCCTGACCCAGAGAAACTCTCCAGTtccttccacccctcctccaCCAGCAAATCAAACAGGAGCAATACCTCAGGGACAGCCCCTGGCGGGGCCACACCCACCAAATGCAAGCGGCCAATGAACGCCTTCATGCTCTTCGCTAAGAAGTACAGGTTGGAGTACACACAGATGTACCCTGGGAAGGATAACAGAGCCATCAGTGTAATCCTGGGTGATAAGTGGAAGAAGATGAAGAACGAGGAAAGGAGGATGTACACCATGGAGGCCAAGGCTCTGGCTGACGAGCAGAAGAGACTCAACCCTGACTGCTGGAAACGCAAGAGAACCAACTCAggGTCCCAGCACCAATAGATGGCCTGGTGAACAGACCGACCAGGTGAACAGACCGACCAGGCGACCCCACTAGCctctctagcctggtcccagatctgtttgtgctgtatagccaactaTGGTCGTTGGACcataagacagcacaaacagacctggaaccaggctactctctctctctgctcacctGTCAAATTGATGAGACATAACTGTGATGCTGAATACACTTGCTTTTATAACTAAGAGACCTTATAGATAGGCCTACAAGATAAAACAACAACTATGAACTATATATTAAAAAGCAGGTCATAAAGTGTAACTAACCGTGCTTATATTTTCTTACATTTTAAAATGACAAAAGATGCCTTGTTATTCCTCTATAAAAAAAGGAAAGGCTCAGTTTTATTTCTTCAGGTAATTTCATATTTCGAGGCATGAAACCTTGAGatcagggttgcaaaattctggtaactttccaAAGAttccccaggttttccagaaattcaGGTTGAAAGattcccagaatcaggagggTATAAGCAAGAAAtccagaatcctccaaccaggaatTCTGGAAAACTTGAGAATTTTGGTAGAAATACTGGAAATTGAGAATCCTACTTGAGACCCAGTGGTGCTAAGTTCGGTTAAGGAAGGAGGAGCAGTGATACAAAAGTTATATTTttaattgtaaaataaataaggGGGATTTTAAATAgctttggtaacactttattttaagggtcCATAATAAAGCATTTATAAGGCATTTACAAACCGCTTGCTCATCATTTATTAATcatgcaggaatgtctaccaatggcatgtccatctttttgtgagaaattacactggtcactcaaaatatttataaaatattaaTAAAGTATAAATAGTGCTCACTGGACTGCAAAAATACTTTACTAATTATTAGTAAATGGTTTACAAATGTGGGcgtaatgattaataaatggtgACCACACAATTTATAACTGCCTTATTAAATGGTTTAATACGGAACCTTAAAATTGTGTTTTTTCTCTTCTCAGCTGTAGTTCATATTGACTTATATTTGTACAACTCAATATATTGCACAGATTGATAAAGCCTTTCATGCATTGTGTCATacagtacatgaccaaaagta

Function

NR:

description
PREDICTED: HMG box-containing protein 1-like isoform X2

GO: NA

KEGG:

id description
K21644 HBP1; HMG box transcription factor 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036980382.1 False 2719 mRNA 0.46 11 53955795 53966503
XM_036980387.1 False 2678 mRNA 0.46 11 53955831 53966503
XM_021605334.2 True 2995 mRNA 0.45 11 53955904 53966503

Neighbor

gene id symbol gene type direction distance location
LOC110525287 LOC106573038 coding upstream 17319 53913928 ~ 53938476 (+)
LOC110525273 LOC106561706 coding upstream 51950 53886920 ~ 53903845 (+)
LOC118936380 LOC106581842 coding upstream 250374 53632830 ~ 53705421 (+)
LOC118964886 NA coding upstream 269697 53685401 ~ 53686098 (+)
LOC110516195 LOC106581842 coding upstream 334962 53598194 ~ 53620959 (+)
LOC110525327 LOC106573036 coding downstream 78310 54044813 ~ 54089850 (+)
LOC118964411 NA coding downstream 276318 54242821 ~ 54249212 (+)
LOC110525344 pta1 coding downstream 316436 54282939 ~ 54297286 (+)
LOC110525380 LOC106573028 coding downstream 453919 54420422 ~ 54444532 (+)
adal adal coding downstream 478952 54445455 ~ 54464446 (+)
G59016 NA non-coding upstream 648 53954845 ~ 53955147 (+)
G58964 NA non-coding upstream 101380 53814648 ~ 53854415 (+)
G58963 NA non-coding upstream 142366 53813074 ~ 53813429 (+)
G58962 NA non-coding upstream 143426 53812083 ~ 53812369 (+)
G58993 NA non-coding downstream 570 53967073 ~ 53969548 (+)
G58992 NA non-coding downstream 3119 53969622 ~ 53971233 (+)
G59021 NA non-coding downstream 6885 53973388 ~ 53973959 (+)
G59024 NA non-coding downstream 9795 53976298 ~ 53976613 (+)
G59032 NA non-coding downstream 16133 53982636 ~ 53983252 (+)
LOC110524575 fgf3 other upstream 2504860 51449353 ~ 51451460 (+)
LOC118964841 NA other upstream 3871799 50037523 ~ 50184257 (+)
G53181 NA other upstream 5061883 48893497 ~ 48893912 (+)
G52324 NA other upstream 5572538 48380542 ~ 48383257 (+)
G59031 NA other downstream 21637 53988140 ~ 53988597 (+)
G59963 NA other downstream 754685 54721188 ~ 54721463 (+)
G61202 LOC106573044 other downstream 1939005 55905508 ~ 55923376 (+)
G61284 LOC106573044 other downstream 2052973 56019476 ~ 56030371 (+)

Expression


Co-expression Network