LOC110525327 (LOC106573036)


Basic Information

Item Value
gene id LOC110525327
gene name LOC106573036
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 54044813 ~ 54089850 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036989711.1
GGCCAAACCTTATTGTGGGTAGCTTCTCACAGGTATCGTCAAGCCTACACGGAGTTAAATGATTGCAAACCAGAGAACAGGAATGCCTTTAGTCTTGATTCTAAAGCAAAGGTGGGTGGGTGGCTTTACTGGACAAATCGGTTAATTATATCAGCAGCGATTCGTCACAGAAAAACGGCAAGCTGTTAAGGACTCTTTTCTTCAGCTCTCGATAAGATTTGACACATCAGCGATTTTCTCTCATGCATGAGTATTTTGATGGAAGATTACAAATAATTTCTTATTCGACTACTAAAACAGGCCAGTCAAACGAAGAAAGAGTATAACGCTTCCCATTTATATACGAGACAAATTTAAGTTTGGTAAAACACCAGGAACCTAGCAAAAACGTTACCGGTTTACCTTTATGAaaagaggaaagggagaaaggCGACCAAATTGAAGGATTAAGGTGTCAATCTCAAGAACGAGAGTGAAGAATGGCAGCCAGTTTGTCAGCAGAGGAAGAACAGGCTACCAAACAGTTTCTGGAGGAAATCACCAAGTGGACCACTCAGCATGGAGTGTCCCAGCTGTCCTGGGAAGTGGCCGTCAAGTTCCTCATGGCGCGCAAGTTCGACGTGCTGCTAGCCATTGAGCTCTTCCACAGCTACAGAGAGACGCGTCTGAAAGAAGGCATCGTTAAACTACAGCCTCAGGAGGAACCTCTGCATTCGGAGCTGCTCAGTGGGAAGTTCACTGTGCTGAGTGTGCGAGACCCATCAGGCGCCTCCATAGCCTTGTACACAGCCAAGCTCCACCACCCCAACAAGACAGGCAACCATGTTGTCCTGCAGGCTCTCTTCTACCTCTTGGACCGGGCTGTGGAGAGGTctgctaaactaaccctgattcaaatGACCATCATACCCATgatagattacggagacataatttatagatcggcggGATTCTATACTTTTGACATGTGGTCcagttttaatatatatatatatatttttaaacggaGCAAGGACTTAAGATCAGATGTTATCACTTTACTTTTTCAAGTTGAAGCCCTCACACTCGcctacctccttctcctctcccaggtCCAGATGGTCAAAATGTCCGACCTCCGCCTGCACCTCCCCCGGGATTGTCTCCCAGAGCACCTGGGGGGGCTGCTGCCCCTGGATGCCCACGGCTGGAACGAGCAGCTCCTGGCTGGGCAGAACGGTCGTGTGGACCCCGTTGACGAGCTGGTAGGCATCCCACTGGCGGACTCGTCGGTCCACACCCCCGGGCTGGAGGCCATGTGCCTGCAGGAGTTCATGGCCCACCTGGGCAGGCTCCAGCGCTCTGGCATCCACCTGGAGTACGTGGAAATCCGCAAGGAGCAACCGCCAGGGACCTTCCACTGTGCCCTTACTGCATACAACCAGGAGAGGAATCGCTATGGGGATGTCCTGTGTCTTGACCAAACAAGAGTTCGTCTGAAAACTCGACAAAACGAGAGATCGGACTACATCAACGCCAGCTTCATGGATGGCTACAAACAGAAGAATGCGTACATCGGTACTCAAGgaccactggAGAAAACTTATGGTGATTTTTGGAGAATGGTCTGGGAGCAAAATGTGCTAGTCATTGTCATGACAACAAGGACGAACGAGGGCGGTCGGAAGAAATGTGGTCAGTACTGGCCTCTGGAGGAAGGTGGACAGGAGGTGTACAGTCACATGGCTGTGGTCAACCAGAGAGTGGACAACCACTCCCACTACAGCCAGACCACCCTGGAGCTGTACAACATGgagAATTGTGAGCAAAAGCAGGTGACCCACTTCCAATACCTGAGCTGGCCTGACTATGGCGTCCCCACTTCGGCCTTGACACTCATCGACTTCCTGGGGGCCGTCAAGAGGCAGCAGAGACAGGCGGTGAAGGGCATGGGGCCCCGGTGGAGAGGCCACCCCCTGGGACCCCCCATGGTGGTTCACTGCAGTGCGGGCATAGGCAGAACAGGTACCTTCTGTGCCCTGGACATTTGTCTGTCCCAGTTGCAGGACATGGGGACACTCAATGTGTGTCAGACGGTGCGGTGGATGAGAACGCAAAGGGCCTTCACGATCCAGACCCCCGACCAGTACTACTTCTGCCACAACGCCATCCTGGAGCATGCTCAAAGACAGGGCCTGCTCTCAGCCAGTCAGTGATGCCAAGGGGGTCACCTTGTAGTTCTCGCAGCCAATCAGTGATGCCCTGGGTGTTGTTCTCGCAGGCAATCTGTAAATCCAGGGGACACTTTGTAGCCAATCAGCATGTCTGCTTCTAGGGATTGCCATCACTTATTCTACCATTTAAGAGGCCTCTAAGACAGACTCATTCCTCCTGACTCTCTCACATTTTAACGACTAGTAAAATTGATTTGTAGTATCTCAAGAAGTCACGGTTCAAGTTGTTGTTTTCTATGAATGGACCACCATTTATTTGTTTTGGTAGTTTGGGCAATGTAAAATCCCATGTCCTACCAAATAGAAATTGTTTAGCTACATTCAAGTCTACTTTCCTATATTATTAGTTCTGTGTCCTCACTGAAATCTGTATTTTTATTTTGTCAATAATATCCACATAGGGACGGTGAGCCAATTTTGCAAAACTCAAGAGGAACATTTCCTCTTGACTTAAATTTCTCCTGGAGCTGATTAAATGGCACGGATGGCTACTTGTAGAAGTTGTCCTGATATGTATGCGGACTTCTCATCTTGCCCTACCCCCAATCCAAGCCTCAACCACGATAAAATGCATAGATTACCTTAAGTTCAACTTAAAGTAATGCTACACCTTAAACAAATTGCGAGCTGCTGATAATGTTGCCATATCAATGCAATCATTTCCTGCAGATTGAAGAATTAAGGGCTGCCCTCACAACAGACTTCATTAAGTTATTCACATTGGCTGTTCAAATTTGTTGTGAAAACCTTGTGATCATGACATTAAATGTTTGGTCGCCGCAATAGTCGATACGTATGCTTCAGTGTGACACTGTCATGTACTTCTGTTGAGCCGCCAATGCTGCGATGAACATGATAACCATGCTTCCGCCTTAAGACCCCAGTAATGTGCAATATACTTTTAAACACAGCCATGTTGAAGCACTTTGAAATGGCTCTTCCCATCGTGCTTTAGGATATTGCAGTTCTTGTGGTGGTATAGTGCATTTAAGGTCAAATTGCAATTATGGGAGGTACTAAACATGTGATATAGGCATAACTTGATTGTTACTGTTGATTGGACCTTTGACCTTCAGGCTTGTCTGGTAGTTCAATGGACACTTATAGAGGACTACATGTAGAATATTACCGTTCCCATTGCTGAACAGTGCGTGTGCATCATATTACATGATATCTTGTTGGATGAAAAAATGTGTTCTTTGCTACTGAATTCATATTGAATTTGCTTGTAGTGCAGCCTCGTTTAAGTCTGCCATCCTCGTACACTCTTACTGATTTTAGAATGATTACTTTCAATGAAGGACAGTGTGACCAAttgtatttttctattttctattgtttctacaactttttCTTACAGGTATTCAGACTTTAAAAGTAGACATTATATTTGCTCTGTTACTATTAGGTAGTATGATTGAGGACAATTGAATCAGATGTTGCTGTATGAAAAAACATTTGTCTACACATGTACATTTCAAATGCTTCTTATGCCAATTATGTTTTCCAACCAAAGGAGATTGGGATATGTTCAATAACATTTCAAAGGAAGACCAAACGTGTATTCAGCACATTAAATGCTAAATGTTCATTCCTAATGGATTGTGTGTGCTCTTG
>TU65668
CGTCAAGCCTACACGGAGTTAAATGATTGCAAACCAGAGAACAGGAATGCCTTTAGTCTTGATTCTAAAGCAAAGGTGGGTGGGTGGCTTTACTGGACAAATCGGTTAATTATATCAGCAGCGATTCGTCACAGAAAAACGGCAAGCTGTTAAGGACTCTTTTCTTCAGCTCTCGATAAGATTTGACACATCAGCGATTTTCTCTCATGCATGAGTATTTTGATGGAAGATTACAAATAATTTCTTATTCGACTACTAAAACAGGCCAGTCAAACGAAGAAAGAGTATAACGCTTCCCATTTATATACGAGACAAATTTAAGTTTGGTAAAACACCAGGAACCTAGCAAAAACGTTACCGGTTTACCTTTATGAaaagaggaaagggagaaaggCGACCAAATTGAAGGATTAAGGTGTCAATCTCAAGAACGAGAGTGAAGAATGGCAGCCAGTTTGTCAGCAGAGGAAGAACAGGCTACCAAACAGTTTCTGGAGGAAATCACCAAGTGGACCACTCAGCATGGAGTGTCCCAGCTGTCCTGGGAAGTGGCCGTCAAGTTCCTCATGGCGCGCAAGTTCGACGTGCTGCTAGCCATTGAGCTCTTCCACAGCTACAGAGAGACGCGTCTGAAAGAAGGCATCGTTAAACTACAGCCTCAGGAGGAACCTCTGCATTCGGAGCTGCTCAGTGGGAAGTTCACTGTGCTGGATATCCAGGCTACCGGACATAATTGATTGGGAAGCGACAGTTAGACGGGGATTCTCAGAAGCAAACTGCGCCCTGTCCTTTACGTAGCCCTTCACCATCGCACTATTTTCGGCCAGACAGGGATACATGCAGCATTAGGGACTCTGAATGACTTCGGAAGAGCAGATGAAACAGATGCTATTCTACGTTTTTGTACTAACTGCCTTACCCTAACTCCAAACAACAGTCAGCAGACCCAGGACAGATAAAACGATAATCGGGGAATCCTTCCTTCCTCATGGAACTTTTTTGAAGGAGAGTTGAATATTCAAGGGAATGtttgtatatagatatatattatttAAGAATGATAGGTATTA
>TU65669
AATTGTTTGAATATTAAGGATattattgtaatattaaacagGAGTTATATGTGTTTTAAACTGTTAATATTATCTAACGTTCGCAGGATATCCAGGCTACCGGACATAATTGATTGGGAAGCGACAGTTAGACGGGGATTCTCAGAAGCAAACTGCGCCCTGTCCTTTACGTAGCCCTTCACCATCGCACTATTTTCGGCACAGGGATACATGCAGCATTAGGGACTCTGAATGACTTCGGAAGAGCAGATGAAACAGATGCTATTCTACGTTTTTGTACTAACTGCCTTACCCTAACTCCAAACAACAGTCAGCAGACCCAGGACAGATAAAACGATAATCGGGGAATCCTTCCTTCCTCATGGAACTTTTTTGAAGGAGAGTTGAATATTCAAGGGAATGtttgtatatagatatatattatttAAGAATGATAGGTATTAATTCTAGGCATTTACatgtatgtttttaaaaatgAAGGCTATTTATACAATGAAACATTGTCTTTATTCATactgtttgtaaacaatagctTGGGTCTACTTGACCCGCTTATTGATTAGAAACCAAGGCCAACTATATTCAATCTGTGAATAGAAATGATAATTAGAAGCTATGGCAAAACAATGATAATACACTATAAACAACTATGAAGACAGGGCTGTGTGTGCGTGAATGATGATCTATTATTTAAGTGTTGAATAAATTCTCTCTCTCAGGCTATGAAAAATACAAAAGATAGGACATTGACTCCTGAGTGTTGAACTTATGCCCACTCTACAACAACCTTGGTCATCTACGAACGTTGGAATATCTACAACTAT

Function

NR:

description
PREDICTED: uncharacterized protein LOC106586305 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036989711.1 False 3830 mRNA 0.46 12 54044813 54089850
TU65668 False 1070 TUCP 0.42 5 54044849 54062254
TU65669 True 824 lncRNA 0.36 2 54061717 54062635

Neighbor

gene id symbol gene type direction distance location
LOC110525297 LOC106573037 coding upstream 78310 53955795 ~ 53966503 (+)
LOC110525287 LOC106573038 coding upstream 106337 53913928 ~ 53938476 (+)
LOC110525273 LOC106561706 coding upstream 140968 53886920 ~ 53903845 (+)
LOC118936380 LOC106581842 coding upstream 339392 53632830 ~ 53705421 (+)
LOC118964886 NA coding upstream 358715 53685401 ~ 53686098 (+)
LOC118964411 NA coding downstream 152971 54242821 ~ 54249212 (+)
LOC110525344 pta1 coding downstream 193089 54282939 ~ 54297286 (+)
LOC110525380 LOC106573028 coding downstream 330572 54420422 ~ 54444532 (+)
adal adal coding downstream 355605 54445455 ~ 54464446 (+)
LOC110532453 reln coding downstream 1136689 55226539 ~ 55523230 (+)
G59071 NA non-coding upstream 2319 54042265 ~ 54042494 (+)
G59069 NA non-coding upstream 3916 54040675 ~ 54040897 (+)
G59068 NA non-coding upstream 4370 54039754 ~ 54040443 (+)
G59067 NA non-coding upstream 5401 54039051 ~ 54039412 (+)
G59063 NA non-coding upstream 10029 54034526 ~ 54034784 (+)
G59255 NA non-coding downstream 30602 54120452 ~ 54120684 (+)
G59256 NA non-coding downstream 33102 54122952 ~ 54123238 (+)
G59262 NA non-coding downstream 43909 54133759 ~ 54133968 (+)
G59263 NA non-coding downstream 44837 54134687 ~ 54134927 (+)
G59265 NA non-coding downstream 46365 54136215 ~ 54136481 (+)
G59031 NA other upstream 56216 53988140 ~ 53988597 (+)
LOC110524575 fgf3 other upstream 2593878 51449353 ~ 51451460 (+)
LOC118964841 NA other upstream 3960817 50037523 ~ 50184257 (+)
G53181 NA other upstream 5150901 48893497 ~ 48893912 (+)
G59963 NA other downstream 631338 54721188 ~ 54721463 (+)
G61202 LOC106573044 other downstream 1815658 55905508 ~ 55923376 (+)
G61284 LOC106573044 other downstream 1929626 56019476 ~ 56030371 (+)
G61804 NA other downstream 2156734 56246584 ~ 56247770 (+)
G61806 NA other downstream 2160038 56249888 ~ 56252015 (+)

Expression


Co-expression Network