LOC118964411


Basic Information

Item Value
gene id LOC118964411
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 54242821 ~ 54249212 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005051448.1
CAGGCAGCACACAGTCAGATGTGGAAGTTTGGACACATCAGATAAAGGAGACCCTCACAGACAAGAGGACGTTGTTCTTTACATGGCAGGAGAGATACGTGGAAACTCTCGCAGAGCAACAGCGGGTCGCGTCTGAAAGGAATTCCCCGTCAATCACCTGTGATAGGAACACTCAGTTGACTTCTCAGCTTGAAACAATTTTGGAAAGTCTGCAGACCAAGAAGATTCACTGTCTGCTGGCCACAATCCATAGGCTGGTCCTGTCGCGCTCTTTCTATTGTGGCCTGGTCAGAAAGTATACAGATGAACAAACCATTGCTGTACAGCTCTCCAGAAAAAATCAAGCGACAATCACGCAACATGGAAGGAACAAGTCACCCCAATTCCCCCCAAGACTGGAGTAAGAGGATTTTCTCCAGCAAGAACATCCAGTCTGGTCCCAGGTGTCATCCAGTCCCAGGTGAACATCCAGTCTGTCCCCCAAGCTGTTGGGACCAGTCTGCTCTGGGCAAAGCAGCATGCAGTGATGCTGAAAAACATCTGCCTTAGCGCAGCGGAGGAGAGGCACCTTATACAGGCAGACCTACAAAATTGCCTTTTTTTGCCAGAGAGAGCTGGGGCTTTTTGAAGAGGCCCTTGTTCCTCTTGGGCAGGGTAAGGCCGAGCCAACGTGCTTTCACCTGGGTGCCTATGTGCTGCTCCCAAAGAAAATGCAGAACATATTAAAGCTCCCGTAGGCGTTGCGCCCGAGTGACGCAGGGTCTaagggcactgcatctcagtgcaaagaggcgccactacagtccctggttataaaggctgtatcacatcgggccgtgattgagagtcccatagggcaacgcacaattggcccagcgtcgtccgggtttggccggggtaggctgtcattgtaaataagaatttattcttaactgacctacctagttaaataGGAGGACTGTAAACCGGAAGACAGTGATTCAGAAGATGAAAGTGGTTGAGTACTGAATGTCTGTGAGTTCTATAGGGACAAACTATACACTTCCAAACATAAGGAAAACCTGCCCTCAGACCCtgtttattgttattttattgtgttactttttttactttagtttatttaactctattttcttaactgcattgttggtttagggctagtcagtaagcatttcactataagccTGTTCACCTTTTGTATGTGTCGAAAGAGttcaacagggatgctggtccatgttgactccaatgcttcacacagttgtgtcaagttggctggttgtcctttgggtggtggaccattattgatacacacaggaaactgttgagtgtgaaaaagcCAGCAGCGTTGCCATTCTTGACACAAAACGGTGCACCtcatttgtcttgcccattcaccatctgaatggcacacatacacaatccaagtctcaattgtctcaaggcttagaaatcattctttaacccgtctcctccccttcatctacactgattcaagtggatttaacaagtgactttAATAAGAGATTGTTGTGTCTGTGACTAACATTAATGtgatgacatgctattttatcaaatcgATTACGTAACGTTTAATTGATTACGTGATTGAATTAAATCAtgcaacaattaactcattaataACGTGGGGCACCACGGAGAAGTTTATTTAAGAAGTTCCGTCTTCCGTGCCTATGGCAACGAGTGACAATTTTACAACCAGACCATCTACTACGTCATCCACAAGTGTTGTCCCCATCGGTGCATCAAGACCCTCAACGTCATCTACATGTGCAACCATCtggtgcagcgagaccctctacaacatctacatcatccacaagtatgaccaccattGGTGCAGCCATGGAAGACGATGAAATGGAGGAAGCACCTCTGGATCTAGGACCACCTGAGATTATTATGAACCTCATGGAAGCCAGAGaacgccagtcagccaggagctgccagagccatcagtcagccaggagctgccagagccatcagtcagccaggagctgccagagccgtcagtcagccaggagctgccagaatcgcccttcactccagaGCTGCCGGAGTCTTCCGTCCATTCGGGACCTGGGGCTAGcatccccagtctgaggtcggcggcgagggtcgccgtttaagaggccacggaggcggataAAGAggcggggtccacgtcccgcgccagagccgccacggCGGACAGAATTTGAGGGATATTATATTATAGGCTCTCAcaattaatttgtggatgtcatcGAGtaaatcaggggtgtcaaactcaaatacccagtgggccaaaatgtaaaacctgaacaaagtcacgggccaacattgaacaaattaacc

Function

NR:

description
uncharacterized protein LOC109882256 isoform X6

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005051448.1 True 2355 mRNA 0.48 4 54242821 54249212

Neighbor

gene id symbol gene type direction distance location
LOC110525327 LOC106573036 coding upstream 152971 54044813 ~ 54089850 (+)
LOC110525297 LOC106573037 coding upstream 276318 53955795 ~ 53966503 (+)
LOC110525287 LOC106573038 coding upstream 304345 53913928 ~ 53938476 (+)
LOC110525273 LOC106561706 coding upstream 338976 53886920 ~ 53903845 (+)
LOC118936380 LOC106581842 coding upstream 537400 53632830 ~ 53705421 (+)
LOC110525344 pta1 coding downstream 33727 54282939 ~ 54297286 (+)
LOC110525380 LOC106573028 coding downstream 171210 54420422 ~ 54444532 (+)
adal adal coding downstream 196243 54445455 ~ 54464446 (+)
LOC110532453 reln coding downstream 977327 55226539 ~ 55523230 (+)
LOC110532459 NA coding downstream 1313208 55562420 ~ 55671844 (+)
G59300 NA non-coding upstream 57649 54184580 ~ 54185172 (+)
G59299 NA non-coding upstream 59442 54182981 ~ 54183379 (+)
G59297 NA non-coding upstream 60945 54181673 ~ 54181876 (+)
G59296 NA non-coding upstream 61195 54180605 ~ 54181626 (+)
G59291 NA non-coding upstream 70597 54172012 ~ 54172224 (+)
G59378 LOC106573031 non-coding downstream 70117 54319329 ~ 54321609 (+)
G59442 NA non-coding downstream 169473 54418685 ~ 54424308 (+)
G59459 NA non-coding downstream 208168 54457380 ~ 54458833 (+)
G59489 NA non-coding downstream 255488 54504700 ~ 54505437 (+)
G59468 LOC100195798 non-coding downstream 269172 54518384 ~ 54533275 (+)
G59031 NA other upstream 254224 53988140 ~ 53988597 (+)
LOC110524575 fgf3 other upstream 2791886 51449353 ~ 51451460 (+)
LOC118964841 NA other upstream 4158825 50037523 ~ 50184257 (+)
G59963 NA other downstream 471976 54721188 ~ 54721463 (+)
G61202 LOC106573044 other downstream 1656296 55905508 ~ 55923376 (+)
G61284 LOC106573044 other downstream 1770264 56019476 ~ 56030371 (+)
G61804 NA other downstream 1997372 56246584 ~ 56247770 (+)
G61806 NA other downstream 2000676 56249888 ~ 56252015 (+)

Expression


Co-expression Network