LOC110525344 (pta1)


Basic Information

Item Value
gene id LOC110525344
gene name pta1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 54282939 ~ 54297286 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021605381.2
TTTAAACATTGTTCATATGCGACCAGCTCAAACTAGTTTCGAAAAAAAAAGTAGGACGACACAGTAAACGCAAGCTGTAGTCTGGGTGCGGAAAGCAAACGACTACACAACCGGTATAGTGATTTGACTGTGAAGTTGCCTGTTTGTGAGAATGAAAATGCAAGGTGTGTTCTCAATGACACTTGTGCTGCTTGTGGCCTTGATGGTCACAGCAGAAGCAGCACACAAACATGGTGACAAAAAAGGTCAGAAAGCCAAAGAGGGGGGCAAAGCAGAGTGTGCTGAGAAGCGCTTTGGCAAATGTGTGCCCAATGCTGGTGACTGTGGAGATGGGTTCCGTGAGGCCACCTGCAGTGAGCACACCACCAAACACAAGTGCAATATCCCCTGCAACTGGAAGAAGGCCTTTGGTGCTGACTGCAAGTACAGGTTCACCAATTGGGGTGAGTGTGACACGACCACCGGCACCAAGAGCCGGTCAGGAACCCTGAAGAAAGACCTGTTCAAGTTAGACTGCGAGGCCACCATCACGGTGACCAAGCCATGCTCCTCTAAGCCCAAGGGAAAGGGAGGAAAAGgGAAGAGGACAGAGTGACAACTAAAGAGTGAAGCTTGAGGACTGACTGAGACACAGCAGGTGTGACTTCTGGCTTACTTCAGCAGCACAATCGTCACCCTCCTTTGCCAAACACTCAGCCAGTGTCTCTGACTgtgtccaaaatgacaccctatctgttatatagtgcactactttagaccagagggccctggtcaaaagtagtgcaatatataaggaatagggtgtcatttgggatgtagcaTCTGTCTCTGCCGCTAAGCGCTTTGTCCttctcaaaacaacaacaacccaACAATCTCTGTCTATACACTCATGTTCATGTCTTTTCACGAAAACAATCTTGttatgtgtttttatttgttttaagggttaaaaaaaaatctttacatTCTTTTCAGTAGGAAACTTGACATATAAGTCAGTCTTCATAGTTTTAGGCCATCCTATGTTATTTTTAACAGAAAATGTAAAGAACTCAACTTCTATTGATAGTTGTAATAAAGCTATAGTTACAAAATTAAACATAAACAAACAACACTATGAACAAAATTATAATATTTCTTCAATGATCATGAATGTCGTTGACCATGTTCCAAGAAGCTCAGAAATACATATTTTAGAAGATTTTAGCGGAATCGTTTTTGTATGTGGATATGTGTACTGTCTATATCCTGGAAACAAATATTAGAATTCTATGGAACAATGGAACTCCtctgcaaaatgtatttttgaactATAGAAATGACTGGAATTGCAACACAAGGtttgtataaaataataaaatactgTACTGTTGTTTGTATAACAAA
>XR_002473740.2
TTTAAACATTGTTCATATGCGACCAGCTCAAACTAGTTTCGAAAAAAAAAGTAGGACGACACAGTAAACGCAAGCTGTAGTCTGGGTGCGGAAAGCAAACGACTACACAACCGGTATAGTGATTTGACTGTGAAGTTGCCTGTTTGTGAGAATGAAAATGCAAGGTGTGTTCTCAATGACACTTGTGCTGCTTGTGGCCTTGATGGTCACAGCAGAAGCAGCACACAAACATGGTGACAAAAAAGGTCAGAAAGCCAAAGAGGGGGGCAAAGCAGAGTGTGCTGAGAAGCGCTTTGGCAAATGTGTGCCCAATGCTGGTGACTGTGGAGATGGGTTCCGTGAGGCCACCTGCAGTGAGCACACCACCAAACACAAGTGCAATATCCCCTGCAACTGGAAGAAGGCCTTTGGTGCTGACTGCAAGTACAGGTTCACCAATTGGGGTGAGTGTGACACGACCACCGGCACCAAGAGCCGGTCAGGAACCCTGAAGAAAGACCTGTTCAAGTTAGACTGCGAGGCCACCATCACGGTGACCAAGCCATGCTCCTCTAAGCCCAAGGGAAAGGGAGGAAAAGgGAAGAGGACAGAGTGACAACTAAAGAGTGAAGCTTGAGGACTGACTGAGACACAGCAGGTGTGACTTCTGGCTTACTTCAGCAGCACAATCGTCACCCTCCTTTGCCAAACACTCAGCCAGTGTCTCTGACTgtgtcatttgggatgtagcaTCTGTCTCTGCCGCTAAGCGCTTTGTCCttctcaaaacaacaacaacccaACAATCTCTGTCTATACACTCATGTTCATGTCTTTTCACGAAAACAATCTTGttatgtgtttttatttgttttaagggttaaaaaaaaatctttacatTCTTTTCAGTAGGAAACTTGACATATAAGTCAGTCTTCATAGTTTTAGGCCATCCTATGTTATTTTTAACAGAAAATGTAAAGAACTCAACTTCTATTGATAGTTGTAATAAAGCTATAGTTACAAAATTAAACATAAACAAACAACACTATGAACAAAATTATAATATTTCTTCAATGATCATGAATGTCGTTGACCATGTTCCAAGAAGCTCAGAAATACATATTTTAGAAGATTTTAGCGGAATCGTTTTTGTATGTGGATATGTGTACTGTCTATATCCTGGAAACAAATATTAGAATTCTATGGAACAATGGAACTCCtctgcaaaatgtatttttgaactATAGAAATGACTGGAATTGCAACACAAGGtttgtataaaataataaaatactgTACTGTTGTTTGTATAACAAA

Function

symbol description
pta1 Predicted to contribute to RNA binding activity. Involved in RNA metabolic process. Part of mRNA cleavage and polyadenylation specificity factor complex. Orthologous to human SYMPK (symplekin).

NR:

description
Pleiotrophic factor-alpha-1 precursor

GO:

id name namespace
GO:0014029 neural crest formation biological_process
GO:0045666 positive regulation of neuron differentiation biological_process
GO:0007420 brain development biological_process
GO:0005576 extracellular region cellular_component
GO:0008083 growth factor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021605381.2 False 1389 mRNA 0.41 5 54282939 54297286
XR_002473740.2 True 1299 mRNA 0.41 6 54282939 54297286

Neighbor

gene id symbol gene type direction distance location
LOC118964411 NA coding upstream 33727 54242821 ~ 54249212 (+)
LOC110525327 LOC106573036 coding upstream 193089 54044813 ~ 54089850 (+)
LOC110525297 LOC106573037 coding upstream 316436 53955795 ~ 53966503 (+)
LOC110525287 LOC106573038 coding upstream 344463 53913928 ~ 53938476 (+)
LOC110525273 LOC106561706 coding upstream 379094 53886920 ~ 53903845 (+)
LOC110525380 LOC106573028 coding downstream 123136 54420422 ~ 54444532 (+)
adal adal coding downstream 148169 54445455 ~ 54464446 (+)
LOC110532453 reln coding downstream 929253 55226539 ~ 55523230 (+)
LOC110532459 NA coding downstream 1265134 55562420 ~ 55671844 (+)
LOC110525494 LOC106573015 coding downstream 1376800 55674086 ~ 55738417 (+)
G59300 NA non-coding upstream 97767 54184580 ~ 54185172 (+)
G59299 NA non-coding upstream 99560 54182981 ~ 54183379 (+)
G59297 NA non-coding upstream 101063 54181673 ~ 54181876 (+)
G59296 NA non-coding upstream 101313 54180605 ~ 54181626 (+)
G59291 NA non-coding upstream 110715 54172012 ~ 54172224 (+)
G59378 LOC106573031 non-coding downstream 22043 54319329 ~ 54321609 (+)
G59442 NA non-coding downstream 121399 54418685 ~ 54424308 (+)
G59459 NA non-coding downstream 160094 54457380 ~ 54458833 (+)
G59489 NA non-coding downstream 207414 54504700 ~ 54505437 (+)
G59468 LOC100195798 non-coding downstream 221098 54518384 ~ 54533275 (+)
G59031 NA other upstream 294342 53988140 ~ 53988597 (+)
LOC118936380 LOC106581842 other upstream 611666 53632830 ~ 53705421 (+)
LOC110524575 fgf3 other upstream 2832004 51449353 ~ 51451460 (+)
LOC118964841 NA other upstream 4198943 50037523 ~ 50184257 (+)
G59963 NA other downstream 423902 54721188 ~ 54721463 (+)
G61202 LOC106573044 other downstream 1608222 55905508 ~ 55923376 (+)
G61284 LOC106573044 other downstream 1722190 56019476 ~ 56030371 (+)
G61804 NA other downstream 1949298 56246584 ~ 56247770 (+)
G61806 NA other downstream 1952602 56249888 ~ 56252015 (+)

Expression


Co-expression Network