LOC110525455 (LOC106573025)


Basic Information

Item Value
gene id LOC110525455
gene name LOC106573025
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 54830826 ~ 54872325 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036980597.1
TGTTGTAGCTCCTGGCTTGGTGCAATACAACTTGGTGTAAACGGATTCTGTGTCCATGTGTCTCCTCCATTTTTCCTGTGAGCTGACAGTTGTTGTTAAACGGAGAACGCTGGGGACCCATAACAAGTTGCAGAGTCGTAACCATGGGGAAGGGATGCATCACGGCAACTAAGTACTTCCTGTTCCTCTTCAACCTCCTCTTCTTTATATTTGGAGCATTGATCATGGGCTTTGGACTGTGGGTTCTCCTGGATAACCAGAGCTTCATCGCAGTTCTGCAGGAATCCTCTACTACCCTGAAGGTAGTGTCCTACATTTTCATCAGTGTGGGGTCTCTCTCCATGGCCATGGGCTTCCTGGGCTGTATAGGAGCCATCTATGAGATACGCTGCCTGCTGGGCCTGtACTTCACCTGCCTCCTGCTCATCCTCATTGCCCAGGTAACCGCTGGGGTGCTCATCTACTttcagagagacaggCTGAAGCATGAGATGTCCAACATCATCAAGGGGATGTTGGTCAACTACACTGGTCAGAACAGGACCACAGAACACACCTGGGACTATGTACAAAGGACGATGAAGTGCTGTGGTTGGACTGGCCCAGGCAACTGGTCGGAGAATGTATGGATCAGGAACAGTTCTGTCTCCATGTACCCTTGCTCCTGTCGGAACGAAACCCTGCCCGGGACAGACGTCAAGGAGACAGGGCTCTGTGAACACTTGTCCAACATCCTCCCGGTCTACGAAACGGGCTGCATGCATAGTGTGGAGGGCTGGCTTCTGGAGAACTGTGGAGTTATTCTTGGAATCTGTGTTGGAGTGGCAGTCATTGAgCTTCTGGGAATGATCCTGTCTATGTGCCTGTGTAAGAGTGTTGTCCAGGAGGACTACACCAAAGTACCCAAGTACTGACTATGAAGACCTGAAGACAGGAAAAGCTATACAccacacagacatgcagacacacactctgacagtGAAACACAGACATGCAGAATCACACTCTGACGGTGAaacacatacatgcagacacacactctgacagtgaaacacagacacgcagacacacactctgacagtggaacacagacacgcagacacacactgacagtgaaacacagacatgcagacacacactctgacagtGAAACAcagacacgcaggcacacacactgacagtgaaacacagaca
>XM_036980594.1
CCGCACGGTGGGGATCTACCACGCCTTCACAGCCAATCGCGTGGCCCGTCACTGACACACATCCCGTTCTCTCACACGCACAACGGGACAGACAAGAAGACGGCCAACTGTTCTCTCCACCTTTTACACCAAAAATTGCAGAGTCGTAACCATGGGGAAGGGATGCATCACGGCAACTAAGTACTTCCTGTTCCTCTTCAACCTCCTCTTCTTTATATTTGGAGCATTGATCATGGGCTTTGGACTGTGGGTTCTCCTGGATAACCAGAGCTTCATCGCAGTTCTGCAGGAATCCTCTACTACCCTGAAGGTAGTGTCCTACATTTTCATCAGTGTGGGGTCTCTCTCCATGGCCATGGGCTTCCTGGGCTGTATAGGAGCCATCTATGAGATACGCTGCCTGCTGGGCCTGtACTTCACCTGCCTCCTGCTCATCCTCATTGCCCAGGTAACCGCTGGGGTGCTCATCTACTttcagagagacaggCTGAAGCATGAGATGTCCAACATCATCAAGGGGATGTTGGTCAACTACACTGGTCAGAACAGGACCACAGAACACACCTGGGACTATGTACAAAGGACGATGAAGTGCTGTGGTTGGACTGGCCCAGGCAACTGGTCGGAGAATGTATGGATCAGGAACAGTTCTGTCTCCATGTACCCTTGCTCCTGTCGGAACGAAACCCTGCCCGGGACAGACGTCAAGGAGACAGGGCTCTGTGAACACTTGTCCAACATCCTCCCGGTCTACGAAACGGGCTGCATGCATAGTGTGGAGGGCTGGCTTCTGGAGAACTGTGGAGTTATTCTTGGAATCTGTGTTGGAGTGGCAGTCATTGAgCTTCTGGGAATGATCCTGTCTATGTGCCTGTGTAAGAGTGTTGTCCAGGAGGACTACACCAAAGTACCCAAGTACTGACTATGAAGACCTGAAGACAGGAAAAGCTATACAccacacagacatgcagacacacactctgacagtGAAACACAGACATGCAGAATCACACTCTGACGGTGAaacacatacatgcagacacacactctgacagtgaaacacagacacgcagacacacactctgacagtggaacacagacacgcagacacacactgacagtgaaacacagacatgcagacacacactctgacagtGAAACAcagacacgcaggcacacacactgacagtgaaacacagaca

Function

NR:

description
PREDICTED: CD82 antigen-like isoform X1

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036980597.1 False 1194 mRNA 0.50 9 54830826 54871653
XM_036980594.1 True 1202 mRNA 0.51 9 54830826 54872325

Neighbor

gene id symbol gene type direction distance location
tspan18b tspan18 coding downstream 114767 54593203 ~ 54716059 (-)
caprin1b LOC100195798 coding downstream 260528 54504696 ~ 54570298 (-)
nat10 nat10 coding downstream 327805 54464407 ~ 54503021 (-)
LOC110525376 LOC106573030 coding downstream 448159 54373111 ~ 54382667 (-)
LOC110525355 LOC106573031 coding downstream 476799 54308050 ~ 54354027 (-)
LOC110525462 LOC106561729 coding upstream 33032 54905357 ~ 54934644 (-)
LOC110525471 NA coding upstream 91131 54963456 ~ 54966553 (-)
LOC118964914 NA coding upstream 106586 54978911 ~ 55034259 (-)
LOC110525476 LOC106573024 coding upstream 199254 55071579 ~ 55128270 (-)
LOC110525505 LOC106573040 coding upstream 872082 55744407 ~ 55801039 (-)
G60097 NA non-coding downstream 5981 54824634 ~ 54824845 (-)
G60096 NA non-coding downstream 7191 54823429 ~ 54823635 (-)
G60079 NA non-coding downstream 19297 54811112 ~ 54811529 (-)
G60071 NA non-coding downstream 25507 54805043 ~ 54805319 (-)
G60061 NA non-coding downstream 32812 54797811 ~ 54798014 (-)
G60478 NA non-coding upstream 138754 55011079 ~ 55015648 (-)
G60506 NA non-coding upstream 171530 55043855 ~ 55044123 (-)
G60517 NA non-coding upstream 197285 55069610 ~ 55069845 (-)
G60580 NA non-coding upstream 298090 55170415 ~ 55170726 (-)
G59978 NA other downstream 93582 54729131 ~ 54737244 (-)
G58958 LOC106581842 other downstream 1033812 53791830 ~ 53797014 (-)
LOC110525178 LOC106581842 other downstream 1067930 53761612 ~ 53774544 (-)
G58842 NA other downstream 1242056 53588422 ~ 53588770 (-)
G58718 LOC100194703 other downstream 1404510 53425964 ~ 53426316 (-)
G60516 NA other upstream 198067 55070392 ~ 55070899 (-)
G60572 NA other upstream 277916 55150241 ~ 55154258 (-)
G60614 NA other upstream 320972 55193297 ~ 55193723 (-)
G60624 NA other upstream 331092 55203417 ~ 55203742 (-)
G61563 NA other upstream 960500 55832825 ~ 55833928 (-)

Expression


Co-expression Network