LOC110525462 (LOC106561729)


Basic Information

Item Value
gene id LOC110525462
gene name LOC106561729
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 54905357 ~ 54934644 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021605592.2
tcaGATGTTGGGGAATGACATCAAGTATCAGGTGCGAGAGCCTGTTGGACTGAGGGTCTGGATCCTCATCTCTGCAGTAGCCTTCACAGTCATGGCCTTGATGGCCCTGGTGTTGCCCAAGCAGCTGTATGACATAGTGTTTGAAGAGGAGATCAACAACACCAGTGTCTCCATCAGACTCTATGGGGGAGCACTGCTCAGTCTGTCCCTCATCATGTGGAATGGTGTCTATACACAAGAGAAGATCATCATCCAGTGGACTCTGCTCAGTGAAGCATGCTACTTTGCCATCCAGTTTTTAGTGACGTCAGTCACTCTAGTGGAGATGGGCTCGTTGCCCAACGCTGcaatcttcctcctcctcagccGAGTAATCTTCCTCCTGGTCACTctgctctactactactacctggGCAGAGGACGACCCAAGAAGATCTGATGGCGAGGGGAACTTTGCTTCCAGATGTGGGCTCAGAGGGAGGTGGGGTGTattgagggaggcaggtagcctagtgtttagagcattgggtcagtaaatgttgctagatcgaatccccgagctgacaaggtaaaaatctgtcgttctgcccctgaacaaggcagttaacccactgttcctaggccatcattataaataagaaattgttcttaactgacttgcctttaaaattaaggttacatttttaaaaatgtaatgagTTAAAAGTGTAGAAATGTAatgtgcagtggtggaaaaagtaccacatttacatacttgagtaaaagtaaagacacaATAGAAAATGcctcaagtgaaagtcacacagtaaaataatacttgagtaaGGCTAAAAGTagctggttttaaatgtacttaagtacagtggtggaacaagtactcaattgagtaaaagtaaattcTAAATATCAAATTACTTAtaataagcaaaccagatggcacaatgttcttgtttttttttgtaatttacgAAAGGAcgggcagactccaacactcaggtcgtgtctacacttgacacttacaTGCGACTTGTGCTATCAGAATAAGAAGATCGCATGGAAAAGACTGGTCTGATTGTGTTCATTCTGGCTGAATGCGTTGCGTGTGGATTTCTCCTCAGTCTGGACACAATCAGGCTACTGAAGGCGCATATAGTGGGTGACGTGATCAGCACTCCTCACACAAGTCTCCAGAAAACGTGTGTTTTGGGACAGAGACACCGTTTCATTATAACGTTGGAGGAAATACGTTCCTAGCGGGTGAGGATAGTGTTTGCTGGCCTCataaatgctagccagctagctaatatttagAAAAACTGTTTTTTCTTGGCTAGAGTTATGCTAACCCATTTGCAATCCCTTTAGAGTAGCTTGCTGGCTAGTTACAGAGGTTAGCTACCGTAGTTAGCTATTGCCATCAGTTGTGGTGTTATTGTCGTATTTGGCCTATTCCACCGTTTGTAGAATGCATACTGGCATGTGCATGTAGTGCGGGGAAAGGGAATCCGGAGACACTGTGGACACAGTCGACACatatacattgcattcggaaagtattcagacaccttgacttttttcaaattttgttacgttacagccttattctaaaatggattaaaaaaaattataatcctaatcaatctacataca

Function

NR:

description
tumor protein p53-inducible protein 11-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021605592.2 True 1650 mRNA 0.43 4 54905357 54934644

Neighbor

gene id symbol gene type direction distance location
LOC110525455 LOC106573025 coding downstream 33032 54830826 ~ 54872325 (-)
tspan18b tspan18 coding downstream 189298 54593203 ~ 54716059 (-)
caprin1b LOC100195798 coding downstream 335059 54504696 ~ 54570298 (-)
nat10 nat10 coding downstream 402336 54464407 ~ 54503021 (-)
LOC110525376 LOC106573030 coding downstream 522690 54373111 ~ 54382667 (-)
LOC110525471 NA coding upstream 28812 54963456 ~ 54966553 (-)
LOC118964914 NA coding upstream 44267 54978911 ~ 55034259 (-)
LOC110525476 LOC106573024 coding upstream 136935 55071579 ~ 55128270 (-)
LOC110525505 LOC106573040 coding upstream 809763 55744407 ~ 55801039 (-)
LOC110525190 LOC106573044 coding upstream 967253 55901897 ~ 56147404 (-)
G60097 NA non-coding downstream 80512 54824634 ~ 54824845 (-)
G60096 NA non-coding downstream 81722 54823429 ~ 54823635 (-)
G60079 NA non-coding downstream 93828 54811112 ~ 54811529 (-)
G60071 NA non-coding downstream 100038 54805043 ~ 54805319 (-)
G60061 NA non-coding downstream 107343 54797811 ~ 54798014 (-)
G60478 NA non-coding upstream 76435 55011079 ~ 55015648 (-)
G60506 NA non-coding upstream 109211 55043855 ~ 55044123 (-)
G60517 NA non-coding upstream 134966 55069610 ~ 55069845 (-)
G60580 NA non-coding upstream 235771 55170415 ~ 55170726 (-)
G59978 NA other downstream 168113 54729131 ~ 54737244 (-)
G58958 LOC106581842 other downstream 1108343 53791830 ~ 53797014 (-)
LOC110525178 LOC106581842 other downstream 1142461 53761612 ~ 53774544 (-)
G58842 NA other downstream 1316587 53588422 ~ 53588770 (-)
G58718 LOC100194703 other downstream 1479041 53425964 ~ 53426316 (-)
G60516 NA other upstream 135748 55070392 ~ 55070899 (-)
G60572 NA other upstream 215597 55150241 ~ 55154258 (-)
G60614 NA other upstream 258653 55193297 ~ 55193723 (-)
G60624 NA other upstream 268773 55203417 ~ 55203742 (-)
G61563 NA other upstream 898181 55832825 ~ 55833928 (-)

Expression


Co-expression Network