LOC110532459


Basic Information

Item Value
gene id LOC110532459
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 55562420 ~ 55671844 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036989714.1
TTTTACTCCAGGCTGCAACCACACCACATGGTACGTGGGCAGGAAGCAAGGCTCCAGGCATCTTGACAGCTGTGTCGCTTTACTTCCTCGCGAGCTTTGTGCCATCGTAGTGCTCTTCACAGGAGACGCTTCATAGCAACGAACTATCTTTCCACTTGTTATATTTTTTCCTTGAACTCTTCTACactgctgtttctctcctgtcgaCCAACAACTGATGTTCCGTTGTTCTGCTCCGCATCTGGATAAGGGTTTAGAAGATTCCTCTTCGCTAATAGATTACCCACTGACCGAAGATATTATTGCACCACCTGTCTGGATTTTTTGTGGAAGCTTTTCATTGTCCAGCCCCAAAGCCCCAGCGAATGAGAAGGAGTGCCCAATGAGCACCATGAGTAGTGAGGCCTCCAACTACACAGGCGGCTCAGACTACGCTACTCACCCCAGTAGCCCCGCAGCAAGACCCTCAAGATCCTCTAAAAAAAATCACAACTTTGGGAAGAGATTTAACTTGATAAGAAGGAACCCCAATGCAGCGGAAATCAAGAGTAACTGGCTTTACAAACtgGACAGCACGGGGATGAAGCTATGGAAGAAGAGGTGGTTTGTGCTGTCAGATATGTGCCTGTACTACTACAGAGATGAGAAAGAGGAGGGTATCCTCGGCAGCATCCTCCTGCCTAGCTTTCATATATCTATGCTGTCTGTCGACGACCACATCAACAGGAAATATGTCTTCAAGGCGACACATCCCAACATGCGAACGTACTACTTTTGCACAGACGCAGCCAAAGACATGGAGTCATGGATGAAGGTGATGACAGACGCTGCGCTGGTGCACTCAGAGCCTATCAAGAGcAGGTTAATACAAGTAGAACAGTGCCGTCCTCAGGACTTCAGTAACCACATTACCCAGAACCACCGAACAGTCCTAACCCGACCAGTGATCCAGAACAACAAGCGGAACCAAGCTGAGGCTGAGCAGGAACAGGAACTTTACACCGTTGCTGCCATAACCAAGGTAACCTCCACCGAGGAGAAGGGGAACAGGAAGCAGTGTGACGCGGAGCGCTACGGTTTCCAGaaagaaggagcagagagagaccgTCCGCTTACTAAGATCAACAGCATCAAACCTCAGCCGGACAAAGGAAGCAGCTGTTGCTTCCAAACTAACCGAACTAAGGGGGTGAATGGGTCCAGGGACCGGAGCCCAGGGGAGATGATGGCCCACCACGAGCCCCACCAGACCCCCTCCATTCTGGGCAGCATGACCACTACCACTCCTACCCCCCAGTACCCCCAGCAAGAGCCTGAGCCCAGGGCCCTGACCAGGACCAGCTCCATGCAGCAGTTGGAACAGTGGGTCCGCACACAGAGAGTACGCAACCAGGACGACGACACTagaagtGTCATGTCGTACCAGACCCTGCCTAGGAACATGCCCAGCCACCGGGCACCTCCAGTCATGCCCCACTGTGGGGACCCTGGCTACCGTACCTTACCCAGGAACAGCATGGTGCGGCCGGACAGTATCTGCAGCATGTCCCCTACCATATACGACCAGGCCCTAGGCATGGGGCTGGGTCTGGGGATCTCGCCTGCAGACAAGAGGCGCTCCATGAGGGACGACACCATGTGGCAGCTGTACGAGTGGCAGCAGAGAATGGGCTACACTCCCAGCCCCAGGCCGACGTCGTCCACGCCCGGGCCGTATGGGACCCTGCCCAGCCCCAAGACCATGATCAACTTGTCTGAGCACCAGGGTGACAGTCACCAATCTATCCAATCTATCCCCCCCTCGCCTTCCCACGGCTCCTTGTCCATGTACGGAGGCTACTCGCCCCTCCGCTCCTCCTACAACCACAGCTCCACTGGTTCAGAAGTGGGCTTGGCTGTATACCAGGGGGATATCACTATAGACAGGAGACACAGCAGGACATCACACCTCAATAAGtaTGCCTACCCGCCTGACAGGAGGCCAATGCCAGCTGGGATCCCTGTCCAGACCATCACTGCCCAATCTCTGCAAGGCAAAACAGTGGACAAGtggttaaataacataTCCAGGAGGAGGAGTTGGAAGTGGAGAACCTCTCAGCTCCCCCGTGGCCACCCTTACCCCAGGCCTACGAGCCGGACCAGCCCAACCTCCCTGTCCTCTCCGGTTACCACCATCTGGCGACCGCCACAGCCACCACATCGGGGTCCCGAGGATAGGGACCGGAAAGCCGGCCAGAGGAACGGAACACACAGCGGTCCAGACTACAGGCTGTATAAGAGTGAACCAGAGCTCACCACTGTAGCTGAGGTGGATGAGACCAACGGAGAGGACAGATCTGAACAGTCTGACAGAGACCCCTCTGACACCAAAGGATTGTCATACCCCGTTGGCATCATTCCCCCCAGAACCAAATCTCCCATAATACTTTCACCTGTACCACGGGTCCAGCCATGGTTCCGGGTAGAAGCCATGCCCGGACTGGGCATCGGCACAGAGGAGGGCCCTGGTCATGGAGCTGGGTTGTACGCCGCACCCAGACTGGGCCCCGGCGCCGAAGAAGGCTCCTCCCATGGAGCAGGACCGGACGCCATGCCTGGACTGGACatcggtgcagaggaaggctcctgccatggagcggaaCCGGAcgcgtgcctggactggAACCGTCGTCAGCGTGACGAGGTGATGAGCAGTGACATCTTGGAGTTGGAGGCGTCACTCAGAGAACAGGTAGTGTTCAGAGAGCAGGAGACACCTGCCGAGGAAATAGCACGACTCTATGAGGCCTCGCACACTGACCACTACAACATGGACAGAGAGttgtCAGTCCCTGAGAAGGTGTTGATTCCAGAGCGTTATGTAGAGTCAGATCCAGAGGAGGCTCTCAGCCCAGAGCAGGAGGCTGGCAAACAGAAGAAGGTGGACCGTATTAAAGCCCTCATCGCCAAAAACAGGAGGAGGCTACAGCTCAAGATGATCAACATCTCCTATGAACTGGCTGCTGAGGCTTCCAAACGCAGCAAGCTGGTCGCAGAACTTCCCGCAACTTGTTTTGTTTTTGCCATTGTGTGTGTGATCATGTGTGTATGGTCCACGTGCGTCCTGTGTGGTCCTGTGTGGTTTGCAGTGCACAGCTTGTCCTCCTCCTCACCGCTTCCTGAGCCCCAACCTTCCTCATCTCCACCTCCTAACACACAACCACCACCCCAGCTCACTGATGGGTCCCACTTCATGTGTGTGTAATAGGAGTGGCATCAGTAATTCCCAGGCCCTGGCTTCAGTGAAGACCTACAGGTGAGAGATGTGATGAGGAGGCTCCTGTTTGCTGTAAAGAAGACCTCTACACAAGGACATGATACACCCAGCACAAAGTGTAGACCAAGAGAACTGTACTCGACAGACAGATAGTTGGACCACGCCATGAGCTGGGCCTTATATGCTGTCTGCTCAATCTATGCCTCACTGTGACATCACATCCTCCTGTGCCATGGCGTCACTTCCTGTGATGTCATCACAATTTGACGTCATCACCACCACaatctccactctccctcccttgcCCCATGGGATCACAACTTTGCAACAAAAAACACAATAATAAGACATCGATACTGTTGTTTGCTGTTGGAGTAGTTTGTTTCATTGTCGTAATTTATATTGTTTGGAGTTTGTTTGAATATGACTGATGTGTGTGTCAAGAATATATGGACTGAACCCTTCTGTGATGAGGATGGCACACTGTTATGCCATTGATTCTTTCATAGTTTAAGAGTTCCACTGTTCAGCATTGTTTCATAACTCTTATTGCATTTCAGTTCATTTTTGAGTTCGTATTGAGTTTACATTTTAGTTTAATCCCAGAATtaccctcaatctacacacaataccctataatgacaaaacaaaaataggttttcagaaatgtttgcgaatgtaaaaaaaaaaaaaaaaaaaa

Function

NR:

description
pleckstrin homology domain-containing family A member 5-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036989714.1 True 3959 mRNA 0.52 22 55562420 55671844

Neighbor

gene id symbol gene type direction distance location
LOC110532453 reln coding upstream 39196 55226539 ~ 55523230 (+)
adal adal coding upstream 1097974 54445455 ~ 54464446 (+)
LOC110525380 LOC106573028 coding upstream 1117888 54420422 ~ 54444532 (+)
LOC110525344 pta1 coding upstream 1265134 54282939 ~ 54297286 (+)
LOC118964411 NA coding upstream 1313208 54242821 ~ 54249212 (+)
LOC110525494 LOC106573015 coding downstream 2242 55674086 ~ 55738417 (+)
LOC110525514 LOC106573043 coding downstream 143527 55815371 ~ 55830186 (+)
LOC118964919 NA coding downstream 304315 55976159 ~ 56024913 (+)
LOC110525521 LOC106576899 coding downstream 879904 56551748 ~ 56596653 (+)
eif3s6ip LOC106576896 coding downstream 1222408 56894252 ~ 56904226 (+)
G61033 NA non-coding upstream 2758 55546568 ~ 55559662 (+)
G61013 NA non-coding upstream 27320 55534893 ~ 55535100 (+)
G60638 NA non-coding upstream 350269 55211884 ~ 55212151 (+)
G60634 NA non-coding upstream 352747 55209318 ~ 55209673 (+)
G61137 LOC106573040 non-coding downstream 74244 55746088 ~ 55750306 (+)
G61147 LOC106573040 non-coding downstream 89400 55761244 ~ 55767151 (+)
G61164 NA non-coding downstream 125429 55797273 ~ 55797489 (+)
G61168 LOC106573040 non-coding downstream 128706 55800550 ~ 55801438 (+)
G61175 NA non-coding downstream 137907 55809751 ~ 55809982 (+)
G59963 NA other upstream 840957 54721188 ~ 54721463 (+)
LOC110525327 LOC106573036 other upstream 1500166 54044813 ~ 54089850 (+)
G59031 NA other upstream 1573823 53988140 ~ 53988597 (+)
LOC118936380 LOC106581842 other upstream 1891147 53632830 ~ 53705421 (+)
LOC110524575 fgf3 other upstream 4111485 51449353 ~ 51451460 (+)
G61202 LOC106573044 other downstream 233664 55905508 ~ 55923376 (+)
G61284 LOC106573044 other downstream 347632 56019476 ~ 56030371 (+)
G61804 NA other downstream 574740 56246584 ~ 56247770 (+)
G61806 NA other downstream 578044 56249888 ~ 56252015 (+)
G63958 NA other downstream 2494721 58166565 ~ 58168178 (+)

Expression


Co-expression Network