LOC110525494 (LOC106573015)


Basic Information

Item Value
gene id LOC110525494
gene name LOC106573015
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 55674086 ~ 55738417 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021605644.2
ACACCAGGCCAGTCGTGCGACAAATGACGATGGGCAGTACAGCAATAGCTGTGGAGATCGTGAACGTAGCCATTGGTGTTCTGCAAACATGGCTACCGATGCTTCTGAGTTGGAGACTCCCGTATTGAGCGAGgaaaacagtgaaatgcttacagaaAAGACCGAAAAGGAAAAGCAGCAAGATCCAGAAGCAGTGAAAGATGAGGCGGGTGATAGCTGGGTAGATGCACCGCTGAAAATTGCGGAAGCGGTTGCGGAGTGTGTGCAAGACGGAGAAGTAGGGGATGCGAAACCTGCTGCAGAGGAGGAGGCCGTGGCTGTCGGAGCGGTAGCGGCTGCGGAAGCGGTAGTGGTGGTGACAGTGGCAACAACAGTCGCAGCAGCAACAAGGGACGCGAATGATGACGTGGTGGTGGGATGCCAACTTGCCAAATCAGAGGAAGATAGCTTGGGTCCGGAGGACGATGTTGATACCAGTGATAATGTTTTTGACGATACGGTAAATGAAATAGAAATTAAACCGGAAGAGCCGAGAGAAGAGCGCCAGTTGCCTGTTATAGTGAGTTGCGTGAAAGGCAAAGCCACCAGTGAGGATGCCCCGGAGTCTGCGGAAGAGAAAACAAACACAGGAGGCGGGGAGCTTGCGGTTGGGGACAAGAGGAGAGCCAGTGTAGAAATGTCATCCTCGGACGGAGAGCCACTCAGCCGGATGGATTCAGAGGACAGTGTCAGCAGTACCCTAATGGACATGGAGAGCACGGTATCCAGCGGGCGTTCCACCCCAGCCATGATGAATGGACAGGGCAGTGCCGCCCAGTGCCACTCAACTACCAAGGGCCAGGCGGTTGGCTATACCTGTTGTTGGGACCAGTGTGGCCTCTGCTTCACCTGCAGCCCTGACCTGGCTGAACACATCAGGGGCATGCATGTCGATGGACAAAGAGGAGGGgtgtttgtgtgtctgtggaaGGGCTGTAAGGTGTACAACACCCCTTCCACCAGTCAGAGCTGGCTCCAGAGACACATGCTGACACACAGCGGAGACAAACCTTTCAAGTGTGTGGTCGGGGGCTGCAATGCCAGTTTCGCGTCCCAGGGGGGGCTAGCGCGCCATGTTCCCACCCACTTCAGCCAGCAGAGCTCCTCTAAGCTGTCCAGTCAGGGCAGACTAAAGGAGGAGTCACCCTCTAAGGCTGGGCTTAATAAGAGAAAGAAACGAATCCTGATGAACAAACGCAGGCGCTCCCTACTGTCTCCTCTCCCACCAGCGAGGCCCCATGACTTCTTCGATGCCCAAACCATGGACGCCATCAGACACCGGGCTATCTGCCTTAACCTGGCCACACACATGGAGAGCACAGGCAATGGACACAGTGTGGTGTTCCACAGCACGGTGATAGCCAGGAGGAAAGAGGGCTCTGGGAAGGTAAAGGTGCTGCTCCACTGGACTCCAGAGGACATCCTGCCTGATGTGTGGGTGAACGAGACGGAGCGTTCTCAGCTGAAGACAAAAGTGGTTCACTTATCCCAGCTACCACAAGACACCGCTATGCTACTAGACCCCAACATCTACAGAGCGTTACCACAGAAGCAGCTGAAGCGAAGTCTGTAAGGAGTCTTCTGTGGACAGAGGACTACAGAAGGGAAGAACTCCTGTTCTTAGGATGTGGGTCTATATGGGACGTCTGTTGTTCCTTGAAAGGAGGAGACTAGCAGAAGGGACCCTGGACAGAGGAGAGATGTTACATCTTTTTTTCTGGGTAGAGTAGAGAATGTTTCCTAATTCCTCTGTATTTTTaaacccaccacccaccactgcatcAGTCTGCAGCATTTAAAATGGTTCTGTTCTTTaaaaggtaattaatgttttatattaagtaCTAAACTTGAAAAGAAAAACTTGTATAAATGATTTTAAGTGTACTACTAAAACTATGGTTTGGTTGTTATACACAACTGCGTAAAGATATAGTTTAATTGTGTAGAAAGTAACATACAGCATTTTTTGTAGACATTGTTCATCTTGTAAATATTTTTTGCAGATTTGTTATTTTTATACCATGAAATACTGTAGTTTATTGTGAATTTATTATTTTTAAGCATAATGTGTAATTATTGTTTCAATGTGAAAGCTCTTTTTGTAACCTATTATTGTTGAAATTATGTCAAATTAAATCATCAATCCATATAATGTTCATGTTGTCTCCGATGATTAAAATTAAGATAATATTAAGATAAAGATTAAGATAAAATGGGGATAATGGTAATGATGACTTGTATAGGCAACCCATTATTGCATGACAGTGCTTATTCTTGGGCTCTCTTGCTGTTGTCAACAATGTGATAGTGTCTATCTTCACTAGttatcacagccacaaagtcataaaccctggCCATGTCTACAATTTATCTCCTTACAatttgattttaaacctaaccttaaccataaccacaCTGCTACCCTTATACCCacactaaccttaaattaagaccaaaaaccctatttttgttttcattaagttttacaatatagcctattttgactttgtggctgtgataaCTAGTTGAAACCGATCGATACAAACGTGTACATTGAAGCATGACCTCTAACCTTTTAGCACCTGTGACCACTAACTACATTAGTGTTAACTAGAACTCCTGAACCCCAAGGCATGGTTAATTCATGAGTATGGTAAACATTTGTGTAATCATTATAGACTATTTACCATGTGTATGTATACAGTTCAACATTCAATATGAGGACTTGTGAACTTAAATTTCACTCTGTATGTTGAAAGTGGAATATATCACCAATAAAACAAAGACAAAGATAAAAGGATCTTGTTGAACAGCA
>XM_021605663.2
ACACCAGGCCAGTCGTGCGACAAATGACGATGGGCAGTACAGCAATAGCTGTGGAGATCGTGAACGTAGCCATTGGTGTTCTGCAAACATGGCTACCGATGCTTCTGAGTTGGAGACTCCCGTATTGAGCGAGgaaaacagtgaaatgcttacagaaAAGACCGAAAAGGAAAAGCAGCAAGATCCAGAAGCAGTGAAAGATGAGGCGGGTGATAGCTGGGTAGATGCACCGCTGAAAATTGCGGAAGCGGTTGCGGAGTGTGTGCAAGACGGAGAAGTAGGGGATGCGAAACCTGCTGCAGAGGAGGAGGCCGTGGCTGTCGGAGCGGTAGCGGCTGCGGAAGCGGTAGTGGTGGTGACAGTGGCAACAACAGTCGCAGCAGCAACAAGGGACGCGAATGATGACGTGGTGGTGGGATGCCAACTTGCCAAATCAGAGGAAGATAGCTTGGGTCCGGAGGACGATGTTGATACCAGTGATAATGTTTTTGACGATACGGTAAATGAAATAGAAATTAAACCGGAAGAGCCGAGAGAAGAGCGCCAGTTGCCTGTTATAGTGAGTTGCGTGAAAGGCAAAGCCACCAGTGAGGATGCCCCGGAGTCTGCGGAAGAGAAAACAAACACAGGAGGCGGGGAGCTTGCGGTTGGGGACAAGAGGAGAGCCAGTGTAGAAATGTCATCCTCGGACGGAGAGCCACTCAGCCGGATGGATTCAGAGGACAGTGTCAGCAGTACCCTAATGGACATGGAGAGCACGGTATCCAGCGGGCGTTCCACCCCAGCCATGATGAATGGACAGGGCAGTGCCGCCCAGTGCCACTCAACTACCAAGGGCCAGGCGGTTGGCTATACCTGTTGTTGGGACCAGTGTGGCCTCTGCTTCACCTGCAGCCCTGACCTGGCTGAACACATCAGGGGCATGCATGTCGATGGACAAAGAGGAGGGgtgtttgtgtgtctgtggaaGGGCTGTAAGGTGTACAACACCCCTTCCACCAGTCAGAGCTGGCTCCAGAGACACATGCTGACACACAGCGGAGACAAACCTTTCAAGTGTGTGGTCGGGGGCTGCAATGCCAGTTTCGCGTCCCAGGGGGGGCTAGCGCGCCATGTTCCCACCCACTTCAGCCAGCAGAGCTCCTCTAAGCTGTCCAGTCAGGGCAGACTAAAGGAGGAGTCACCCTCTAAGGCTGGGCTTAATAAGAGAAAGAAACGAATCCTGATGAACAAACGCAGGCGCTCCCTACCGAGGCCCCATGACTTCTTCGATGCCCAAACCATGGACGCCATCAGACACCGGGCTATCTGCCTTAACCTGGCCACACACATGGAGAGCACAGGCAATGGACACAGTGTGGTGTTCCACAGCACGGTGATAGCCAGGAGGAAAGAGGGCTCTGGGAAGGTAAAGGTGCTGCTCCACTGGACTCCAGAGGACATCCTGCCTGATGTGTGGGTGAACGAGACGGAGCGTTCTCAGCTGAAGACAAAAGTGGTTCACTTATCCCAGCTACCACAAGACACCGCTATGCTACTAGACCCCAACATCTACAGAGCGTTACCACAGAAGCAGCTGAAGCGAAGTCTGTAAGGAGTCTTCTGTGGACAGAGGACTACAGAAGGGAAGAACTCCTGTTCTTAGGATGTGGGTCTATATGGGACGTCTGTTGTTCCTTGAAAGGAGGAGACTAGCAGAAGGGACCCTGGACAGAGGAGAGATGTTACATCTTTTTTTCTGGGTAGAGTAGAGAATGTTTCCTAATTCCTCTGTATTTTTaaacccaccacccaccactgcatcAGTCTGCAGCATTTAAAATGGTTCTGTTCTTTaaaaggtaattaatgttttatattaagtaCTAAACTTGAAAAGAAAAACTTGTATAAATGATTTTAAGTGTACTACTAAAACTATGGTTTGGTTGTTATACACAACTGCGTAAAGATATAGTTTAATTGTGTAGAAAGTAACATACAGCATTTTTTGTAGACATTGTTCATCTTGTAAATATTTTTTGCAGATTTGTTATTTTTATACCATGAAATACTGTAGTTTATTGTGAATTTATTATTTTTAAGCATAATGTGTAATTATTGTTTCAATGTGAAAGCTCTTTTTGTAACCTATTATTGTTGAAATTATGTCAAATTAAATCATCAATCCATATAATGTTCATGTTGTCTCCGATGATTAAAATTAAGATAATATTAAGATAAAGATTAAGATAAAATGGGGATAATGGTAATGATGACTTGTATAGGCAACCCATTATTGCATGACAGTGCTTATTCTTGGGCTCTCTTGCTGTTGTCAACAATGTGATAGTGTCTATCTTCACTAGttatcacagccacaaagtcataaaccctggCCATGTCTACAATTTATCTCCTTACAatttgattttaaacctaaccttaaccataaccacaCTGCTACCCTTATACCCacactaaccttaaattaagaccaaaaaccctatttttgttttcattaagttttacaatatagcctattttgactttgtggctgtgataaCTAGTTGAAACCGATCGATACAAACGTGTACATTGAAGCATGACCTCTAACCTTTTAGCACCTGTGACCACTAACTACATTAGTGTTAACTAGAACTCCTGAACCCCAAGGCATGGTTAATTCATGAGTATGGTAAACATTTGTGTAATCATTATAGACTATTTACCATGTGTATGTATACAGTTCAACATTCAATATGAGGACTTGTGAACTTAAATTTCACTCTGTATGTTGAAAGTGGAATATATCACCAATAAAACAAAGACAAAGATAAAAGGATCTTGTTGAACAGCA

Function

NR:

description
zinc finger protein aebp2-like isoform X4

GO: NA

KEGG:

id description
K17452 AEBP2; zinc finger protein AEBP2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021605644.2 False 2857 mRNA 0.45 9 55674086 55738417
XM_021605663.2 True 2839 mRNA 0.45 9 55674086 55738417

Neighbor

gene id symbol gene type direction distance location
LOC110532459 NA coding upstream 2242 55562420 ~ 55671844 (+)
LOC110532453 reln coding upstream 150862 55226539 ~ 55523230 (+)
adal adal coding upstream 1209640 54445455 ~ 54464446 (+)
LOC110525380 LOC106573028 coding upstream 1229554 54420422 ~ 54444532 (+)
LOC110525344 pta1 coding upstream 1376800 54282939 ~ 54297286 (+)
LOC110525514 LOC106573043 coding downstream 76954 55815371 ~ 55830186 (+)
LOC118964919 NA coding downstream 237742 55976159 ~ 56024913 (+)
LOC110525521 LOC106576899 coding downstream 813331 56551748 ~ 56596653 (+)
eif3s6ip LOC106576896 coding downstream 1155835 56894252 ~ 56904226 (+)
vsir cssa18h10orf54 coding downstream 1297191 57035608 ~ 57062851 (+)
G61033 NA non-coding upstream 114424 55546568 ~ 55559662 (+)
G61013 NA non-coding upstream 138986 55534893 ~ 55535100 (+)
G60638 NA non-coding upstream 461935 55211884 ~ 55212151 (+)
G60634 NA non-coding upstream 464413 55209318 ~ 55209673 (+)
G61137 LOC106573040 non-coding downstream 7671 55746088 ~ 55750306 (+)
G61147 LOC106573040 non-coding downstream 22827 55761244 ~ 55767151 (+)
G61164 NA non-coding downstream 58856 55797273 ~ 55797489 (+)
G61168 LOC106573040 non-coding downstream 62133 55800550 ~ 55801438 (+)
G61175 NA non-coding downstream 71334 55809751 ~ 55809982 (+)
G59963 NA other upstream 952623 54721188 ~ 54721463 (+)
LOC110525327 LOC106573036 other upstream 1611832 54044813 ~ 54089850 (+)
G59031 NA other upstream 1685489 53988140 ~ 53988597 (+)
LOC118936380 LOC106581842 other upstream 2002813 53632830 ~ 53705421 (+)
LOC110524575 fgf3 other upstream 4223151 51449353 ~ 51451460 (+)
G61202 LOC106573044 other downstream 167091 55905508 ~ 55923376 (+)
G61284 LOC106573044 other downstream 281059 56019476 ~ 56030371 (+)
G61804 NA other downstream 508167 56246584 ~ 56247770 (+)
G61806 NA other downstream 511471 56249888 ~ 56252015 (+)
G63958 NA other downstream 2428148 58166565 ~ 58168178 (+)

Expression


Co-expression Network