LOC110525505 (LOC106573040)


Basic Information

Item Value
gene id LOC110525505
gene name LOC106573040
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 55744407 ~ 55801039 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036980645.1
ACCAGGGCACTGACAACTCTGAAGGGGACAAGGAAGACGAGATGCCGGCTACAGAGAAGGACCTTGCCGAGGATGCGCCATGGAAGAAAATACAACAGAACACTTTTACCAGGTGGTGCAATGAGCACCTCAAGTGCATAAACAAGAGCATCACTGACTTGCAGAAGGATGTTGGCGACGGTTTAAAGCTGATCGGGCTCCTGGAAGTTCTGAGTCAGAAGAAGATGTACAGAAAGCATCACAATAGACCCAACCTCAGACAGATGAAACTGGAAAATGTGTCGGTGGCCCTTGAATTCTTGGACGGGGAACACATCAAGTTGGTGTCTATTGACTCCAAGGCCATCGTGGATGGGAACCTGAAGTTGATCCTGGGTCTGATCTGGACTCTGATCTTGCACTACTCCATCTCCATGCCCATGTGGGAGGACGAGGATGATGAGGAGGCCAATGAACTGACCCCCAAGCAGAGGCTGCTTGGCTGGATCCGGAACAAGGTGCCTGAGCTGCCCATCAACAACTTCCACCGTGACTGGAGGGACGGCAAGGCCCTGGGAGCCCTGGTAGACAACTGTGCCCCTGgTCTGTGCCCTGACTGGCAGGCATGGGACCCTAACCAGCCTGTGGAGAATGCCAGAGGGGCTATGCAGCAGGCTGACGACTGGCTGGGCGTTCCCCAGGTGATCAACCCTGAGGAGATTGTAGATCCGGAAGTGGATGAACAGTCCATGATGACTTACCTGTCCCAGTTCCCCAAGTCTAAACTGAGGCCTGGCGCTCCCCTCAAACCTAAAGGGGTTCAGCTGTACCCCAAAAAAGCCAAGTCTTACGGACCAGgTATTGAAGCAAATGGTAACATGATTCTGAAGCCAGCAGTGTTCACAGTGGAAACTCTGGAGGCAGGTCAGGCTGAGGTGCTGGTGTATGTCATTGATCCTGAGGGACACACTGAGGAGGCTAAGGTGGTCTTCAACAACGACAAGAACAGGACCCACACCGTCATTTACATCCCCAAGGTTGAGGGCGCCCACAAGGTGAAAGTGCTATTTGCTGGGCAGGATGTTGATAAGAGCCCCTACACAGTGAACGTGGCCAAGGCCATAGGTGATCCCAACAAGGTCCAGGCCAGAGGACCAGGGCTGGATGCTACCGGCAACATGGCCAACAAACCCACCTACTTTGACATCTACACTGCAGGTGCTGGTAACGGTGATGTGAGCGTTGTCATCGTGGACACTGAGGGGAAGAAAGACACGGTGAAACTGATCTTGGAAAACAAGGGAGACAGTGTTTTCCGTTGCACCTACCGGCCCATGTTGGAAGGCCCCCACACCATCCATATCCTGTTTGCCGGTCAGGAGATCCTTAAGAGCCCCTTCAGGGTTCAAATCAAAGAGGcCATCAATGCCGACACGTGTCGTGCCACGGGCAGAGGCCTTCAGCCAAAAGGGGTGCGGGTCAAGGAGGTGGCAGACTTCAAGGTCTTCACCAAGGGAGCTGGCAACGGAGAGCTCAAGGTCTCAGTGACTGGACCATGTGGAGATGAGGAGCCAGTGAAATTAAAAGATATTGGTGATGGTGTCTATGAATGTGAATATCTTCCTAACCAGACTGGTAAATACACCGTCAACATCACCTGGGGAGGACAGCCCATCCCACACAGCCCCTTCGATGTGGAGGTGAGTGAGGTGGCAGGCCCTCAGAAGGTGAGAGCCTGGGGTCCTGGTCTGTTGACCGGACGGGTGGGCAAGTCGGCTGACTTCGTGGTGGAGGCCATCGGCACGGAAGTGGGAACTCTGGGCTTCTCTATCGAGGGTCCATCCCAGGCTAAGATAGAGTGTGATGATAAAGGTGACGGCTCCTGCGATGTCCGCTATTGGCCCACTAAGCCAGATTACTACGCTGTCCATGTCATATGTGATGACGAAGACATCAAGGGCAGCCCCTTCATGGCCCACATCCTCTCTGCAACCAATGACTGCTTCCCTGATAAGGTGAAAGCTTTCGGTCCAGGCCTGGAGCCCATAGGGGTCATCGTAAACAAACCAGCAGAGTTCACCATCGATGCCCGCGGTGCTGGCAAAGGCCATCTGAAGATCTACGCCAAGGATACAGAGAGCGTCACCATCGACATTAAGATAACTGATAAGGGAGACGGGACCTTCTTGTGTGTGTACGTTCCCATCAAGCCCATCAaacacaccatcatcatcacctggGGAGATGTCAAAGTGCCCAACAGCCACTTCAGGGTGATTGTTGGAGAGGGCTGCCACCCAGACAAGGTCAAGGTGTATGGTCCAGGAGTGGAGAAGACAGGACTCAAGGCAAACGAGCCCAACTTCTTCACTGTGGACTGCGCAGAGGCTGGACAAGGAGACATCAGTATTGGGATCAAGTGTGCTCCAGGAGTGGTGGGTCCAGCTGAGGCTGACATCAACTTTGACATTATCAAGAACGACAATGACACCTTCACTGTCAAGTACACCCCCCCCGGTGCAGGGAAATACACCATCATGGTGTTGTTCGCTGAACAGGAAATCCCCATTAGTCCATTTAGAGTGAAGGTGAATAATTTCCATGATGCTGGCAATGTGAGGGCTGAGGGTCCAGGACTCAACAAGACAGGCGTGGAGGCGGGCACTCCGACCCACTTCACCATCTTCACAAAGGGAGCAGGCAAGGCCAAGCCAAAGGTCCAGTTCACAGCAGCAGAACTGAAGGGAGAGGCTGTCAGGGACTTTGAGATCATAGACAACCATGACTACTCCTACACCGTTAAGTACACCGCTGTTCATCAGGGTCAGATGACCATCTCCGTTACCCATGGAGGGGACCCCATTCCCAAGAGCCCCTTCAATATTACTGTGGCTCCTCCTGTAGATCTGGGAAAGGTCAAGGTTACAGGACTGGACACCAAGGTGGAAGTTGGCAAGGATCAAGAGTTCTACATCAACACCCAGGGAGCCGGAGGACAGGGCGAGGTGGCTGTCAAGATGACCTCACCCTCTGGCCGACCAATTCCTTACAAGCTGCATTCGGACACAGCCAATGGAGCCCACTCTGTGAAGTACATCCCCCCAGAGGAGGGGACTTACAAGGTGGACGTCAGCTATGATTGCAACCCCGTCCCTGGATCCCCCTTCGCTGTGGAGGGAGTGATGCCTGCTGACCCATCAAAGGTGTGCGCATACAGCCCAGGCCTGAAGGGAGGCATTGTGGGTAAACCAGCCCCCTTTGCCATTGACACCAATGGAGCAGGCCCCGGCGGGCTGGGCCTGACTGTGGAGGGGTCGTGCAAGGCTAAGATCGAGTGCCAGGACAATGGACACAGTACCTGCTCGGTGTCCTACCTGCCTACCGAGGCTGGAGAGTATGCCATCAATATCCTGTTTGGAAAGCAGCACATCCCTGGGTCTCCTTTCAAGGCAGCTGTTAAGCCATGCCTGGACCCCAGCCAGgtaactgccagtgGTCCAGGCCTAGATAAAGCCAAGGCAGGGGAACCAGCCTACTTTACAGTGGACTGCACCAGTGCCGGAGAGGCTGAGCTCACCATCGAGATTGTCTCTGAGTCCGGGGCTGAGTCCGAGGTCCACATCCAGAAGACAGCCGAGGGATCCTTCTCTGTCACCTACATCCCACCTTTCCACGgcacacacaccatcaccattAAGTACGGGGGTCATGTGGTTCCCAACTTCCCTGCACTCATCCAAGTGGAGCCGGCTGTTGATACCAGCGGAGTGCAGGTCTATGGACCAGGAGTGCAGCCCTTAGGTGTCATCAAGGAGGTTACCACTCACTTCATTGTGGATGCCCGCAAAATGCCCAAGACCTTTGGTGACCACTTGAAAGCATGCATCATCAACCCTTCAGGCACCAACACAGACACCTACATCACAAACAAGGGAGACGGAACCTTCAGAGTGGAATACACCGCCTATGAGGACGGTATGCATGTGATTAAGGTACTGTATTGCGAGGTGGCCATCTCTAAGAGTCCCTTCAGGGTGTCAGTGGTGGAGGGATGTGACCCCACCCGGGTCAGGGCCTACGGGCCAGGGCTCGAGGGAGGACTCATCAACACACCAAACTGCTTCACCGTCGAGACCAGGGGTGCTGGTACTGGAGGCCTGGGCCTGACCATAGAGGGAGCGTCAGAGGCAAAAATGACCTGTAAAGATAACAAAGATGGCAGCTGCAGCGTAGAGTACGTTACCTTCACACCTGGAGAGTACGACGTCAATATCAACTTCGGAGGACACCCCATTCCAGGCAGTCCGTTCCGCGTGCCAGTGAGGGATGTGGTGGATCCCAGTCAGGTGAAATGTTCAGGCCTAGGTTTGGGTGACAGAGTCAGAGCCCACCTACCTCAGACCTTTACTGTGGACACTATACAGGCAGGACAGGCAAATCTGCAGGTCAGTCTCATAGGACCATCAGGTTCAGAGCCTGTTGCTGTAAAAAATAACAGTGATGgtacacacacagtcaactacaCTCCAGTTCATGATGGCCCTTACACTGTGTCAGTTAAATATGGAGACCAGGAGGTTCCTCACAGtccattCAAGGTGAGATCTCAGCCTGGTCATGATGCCAGTAAGGTTTGTGCAAGCGGTCCAGGTCTGGACAAGTCAGGTGTGCCCGCCAGCCTGCCAGTGGAGTTCACCATTGATGACCGCGACGCAGGAGAGGGACTGCTCACTGTACAAATACTGGACCAAGAATGCAAGCCAAAGAAGGCTACCATCTATGATAACAGAGATGGGACCTACACAGTGTCTTACGTACCAGACTCCACCGGCCTTTACACAATCATGATCAAGTATGGAGGCGATGAGATCCCCTACTCTCCCTACCATATCTTAGCCCTGCCCACTGGAGACGCCAGCAAGTGTCTGCTCACTGTGTCTATCGAAGGACATGCCCTGGCATCAGGTCTGACTAAGATGCAGTTGCACGAGGAGGCCATCATCTCTGTGGACACAAAGGCTGCTGGGAAGGGCAAGGTGACCTGCTCGGTCATGACCCCAGAGGGGGTGGAGCTAGACATGGATGTGCAGGAGAACCGTGATGGAACCTTCGAGATCTACTACACCGCTCCAGAACCAGGAAAATATGTCATCACCATCCGCTTCGGAGGACAGCACATACCCAGGAGCCCCTTCCATGTTACGGCAACAAAGGAGCCCATTGTCCTTAGTGACGGCATGGATCAGTTCCGCCCTCTCAACCTGGTCATCCCGTTCACTGTACAGCAGGGACCGATCACAGGTGAGGTGCGTATGCCCTACGGTAAGACTGCCCATCCCTACATAATAAATGACAATGATGGGACCATCACAGTTAAATTCAACCCTACTGAAAAGGGTCTGCACGAGATGGACATCAAGTATGAAGGAAATCACATCCCAGGAAGCCCCCTCCAGTTCTATGTGGATGCTATGAACAGTGGTCTGGTGACAGCATACGGCCCTGGTCTCTGTCAAGGGTCCATCAACAAACCTGTCACTTTCATTGTGGTCACCAAGAACGCTGGAGAAGGTGGTCTGTCCCTAGCGGTGGAGGGTCCTTCTAAGGCAAAGATCACCTGTAAAGACAATAAGGATGGAACCTGTACTGTATCCTACCTGCCCACCTCACCAGGAGACTACAAGATCATTGTCAAGTTTGACAACAAACACATAGCCGGCAGCCCCTTCACTGCTAAAATCACTGGTGATGACTCTATCAGGACATCCCAGCTCAACGTGGGGACAGCAGCAGACTTGCCACTGAAGATCACAGAGTCTGACCTGAGTCTGCTGACGGGTAATATCAGAGCTCCATTAGGCAACGAAGAGCCGTGTTTGCTCAAGAGACTGCCCAGCAGACACATAGGTATCTCCTTCACCCCTAAGGAGGTGGGAGAGCACAAGGTGAGCGTGAAGAAGAACGGTAAGCACGTGACCAACAGCCCTTTCAAGATCCAGGTTGGCCAGTCAGATATTGGCGAGGCCAGTAGGGTCAAGGCCTTTGGTAAAGGACTGGTGGAGGCACACACCTTCAAAATGGCTGAGTTCTTTGTGGACACTAGGGATGCAGgcagaaatacagccggtatgacGAGTTTCGCATCAACATTCAAAATGGGTTATGGTGGTCTGGGGTTGTCGATCGAGGGTCCGAGTAAAGTGGATATTAACTGTGAGGTTGTGGAGGATGGGACGTGCAGAGTCAGTTACTGCCCCACAGAGCCAggcaaccacatcatcaacatcaaGTTTTCTGACAAGCACATCCCAGGAAGTCCTTTCACAGTGAAGGTGACAGGAGAAGGAAGGATGAAGGAGAGCATCACCAGGAAGAGAACTGCCCCCGCCATCGCTTCTGTCGGCAGCGCCTGTGGCCTCAACCTCAAAATCCCTGGAAACTGGTTCCAGATGGTGTCAGCCCAGGAGAGGATGACGCGCACATTCACACGCAGCAGCCACACGTACACACGCAAGGAGCGCACGGAGATCAGCAAGATGCGGGGCGGCCAGACGAAGAGGGAGGTGAGGGTCGAAGAGAGCACCCAGacgggaggaacaggaggagccAGTCCATTCACAGATGTTTTTGGAGAGTTCCTGGGCAGAAAGAGTCTGGCTAGCTTCGCTGGGATACCCGCTACAGTCACACCAGGTGAAACCGCTACCATGGGTAGTATGATGGCCCAGGTTACCAGCCCTGGGGGTAAAACAGAACAGGCAGAGATCATAGATGGAGGGGACAGCACCTACAGTGTCCGCTTCGTGCCCCAGGAGATGGGGGCCCACACGGTCAATGTGAAGTACAGCGGGCAGCACGTCCCAGGTAGTCCCTTCCAGTTTACAGTGGGACCCCTGGGAGAAGGAGGGTCCCACAAGGTTCGGGCCGGAGGCactgggctggagagaggagtggcAGGAGCACCAACTGAGTTTAGTATCTGGACGCGGGAGGCCGGTGCAGGCGGTCTGTCCATCGCAGTAGAGGGGCCCAGTAAGGCTGAGATCTCCTTTGAAGACAGGAAGGATGGATCCTGTAGGGTGGTCTACATTGTACAGGATCCAGGTGACTATGAAGTGTCAATCAAGTTCAACAACGAGCACATCCCCGACAGCCCCTttgttgttcccatagcaacgctGTCTGATGAGGCTTGCCGACTCACTGTCACCAGCCTGCagGACCTAAAGGTGAACCAGGAAGCGTTGTTCGCTGTACAGTGTAACGGGGCAAGGGGCGTGGTTGATGCTAAGGTCCATACCCCCTCCGGCTCAGCAGAGGAGTGCTACATCACAGACCTGGACAGTGACAAGAACACCATCCGCTTCATTCCCCGTGAGAATGGCGTGCACTCCATCGACGTCAAGTTCAATGGCAGCCACATCCCTGGAAGTCCGTTCAACGTGAGGGTGGGGGAGGCCGGACAGGCTGGAGACCCAGGCATGGTGACAGTTTATGGGCCTGGACTAGATGGAGGATCCACAGgtgTAGCCTCAGAGTTTGTAGTGAACACCTGTAACGCGGGGTCGGGTGCCCTGTCCGTGACCATCGACGGTCCCTCTAAGGTGAAGATGGACTGTTCCGATTGCCTTGATGGCTACAAGGTCATCTACACACCTATGGCCCCCGGCAACTATCTCATCACCATCAAATATGGAGGACCCAACCATATAGTGGGCAGCCCATTCAAAGCCAAAGTCACAGGTACCCGTCTGTCTGGTGGTCACAGCCTTCACGAGACGTCCTCGGTCCTGGTACAGACGATTACTAAGACGTCCAAGGTAGCAGGAGCGTACAGTACCTCGTCAAAACTGACCTCTGACGCCAGCAAGGTGGTGTGTCGAGGCGGCGGGCTCACCAAGGCTCTGGTCGGACAGAAGAATGTATTCAATGTGGACTGCAGCAAAGCAGGTACTAACATGTTGCTTGTGGGAGTGCACGGTCCCAGGACGCCCTGTGAAAAGGTGTACGTTAAACACATGGGCAACCGCCTGTACAACGTCACCTACACTGTCAAAGACAAGGACAACTACACCATTATCGCCAAGTGGGGGGATGACAGTGTTCCTGGCAGCCCCTTCAAAGTAGCTGTGCCCTGAAAGAACTCTGTTCTCCAAACCCTTGAAATCTCACCCCTAACCCCCATTTCACCGCCACCCTGCTCCGCTGCACGACTGTAGAGCGAACCTCCTCTCCCAATGTGCACAAAAAACATGCAAAGAAGTTTCTCTCCCTATAAGTAAAAAATAagatttcaacctttatttaaaaaTGATTAACTCTAACTGTTACTGTTTAGAGAAAGTTGTCTGTGACTAGTaactatcattgtgaagcagaattcacgaagcgttggattgttcacccactaatagggaaacgtgagctgggtttagaccgtcgtgagacacgttagttttaccctactgatggtgtgttgttgcaatagtaattaTTTCCAGAGTTGGAAAGAGGGCACTCCTATATTTTGCCATTAATTGTTTCTGTAACTGCATGGGCAGTGCGCCATCTATCGATCTCTATGTGTACTGTAGACGTGTTCCAAGTCATGTTGTTCAAAGTATTTTGATTGGTCCAAAGACCCTGTTCGACCAATAGAAAGGGATTGTTGTGTAGCAAAGGATGGCTTAATGTGTGAATGTTATAAACTGAAGATAATTTGCTATCAAACAGTATTAAATATCGTAtgcttaaataaaaataaacatgtctTTTTGTTATA

Function

NR:

description
filamin-C-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036980645.1 True 8761 mRNA 0.53 43 55744407 55801039

Neighbor

gene id symbol gene type direction distance location
LOC110525476 LOC106573024 coding downstream 616137 55071579 ~ 55128270 (-)
LOC118964914 NA coding downstream 710148 54978911 ~ 55034259 (-)
LOC110525471 NA coding downstream 777854 54963456 ~ 54966553 (-)
LOC110525462 LOC106561729 coding downstream 809763 54905357 ~ 54934644 (-)
LOC110525455 LOC106573025 coding downstream 872082 54830826 ~ 54872325 (-)
LOC110525190 LOC106573044 coding upstream 100858 55901897 ~ 56147404 (-)
LOC110525232 NA coding upstream 268166 56069205 ~ 56079783 (-)
LOC110521481 LOC106573508 coding upstream 734630 56535669 ~ 56544298 (-)
smoc2 smoc2 coding upstream 990582 56791621 ~ 56873384 (-)
cdh23 cdh23 coding upstream 1103570 56904609 ~ 57560442 (-)
G61008 NA non-coding downstream 213135 55531070 ~ 55531272 (-)
G61006 NA non-coding downstream 213662 55530541 ~ 55530745 (-)
G61003 NA non-coding downstream 214861 55529329 ~ 55529546 (-)
G60933 NA non-coding downstream 316205 55426361 ~ 55428202 (-)
G60918 NA non-coding downstream 327617 55415676 ~ 55416790 (-)
G61556 NA non-coding upstream 10848 55811887 ~ 55812149 (-)
G61522 NA non-coding upstream 14367 55815406 ~ 55830189 (-)
G61563 NA non-coding upstream 31833 55832825 ~ 55833928 (-)
G61564 NA non-coding upstream 35257 55836296 ~ 55836551 (-)
G61529 NA non-coding upstream 37714 55838753 ~ 55839809 (-)
G60624 NA other downstream 540665 55203417 ~ 55203742 (-)
G60614 NA other downstream 550684 55193297 ~ 55193723 (-)
G60572 NA other downstream 590149 55150241 ~ 55154258 (-)
G60516 NA other downstream 673508 55070392 ~ 55070899 (-)
G59978 NA other downstream 1007163 54729131 ~ 54737244 (-)
G61715 NA other upstream 352391 56153430 ~ 56153918 (-)
G61978 NA other upstream 723931 56524970 ~ 56533975 (-)
G63093 NA other upstream 1234628 57035667 ~ 57062848 (-)
G63328 NA other upstream 1596155 57397194 ~ 57398488 (-)

Expression


Co-expression Network