LOC110525232


Basic Information

Item Value
gene id LOC110525232
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 56069205 ~ 56079783 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_002473726.2
TTTTCCATGTTATCTTTGAGATATTGTCCTTTGATTAAATGATTAATATTTAATATGGGTTTTAATGTCAGTCAGATCTAGGACCTTACTcaaaatagatagatagatagatctgtATTGTCTTCAAAGAGCACATTTGTTTTCACAGCCTGTATGGTAAACAGCTGTATATTCACCAACTGTCatcattatatatacagtatatattttttaaacgtcATCACACTCAACCCACCACCATCATGAAGGTGTCATCTAGACAAGACAGCATGACATAACTTAATGGTAGTTATCAGGAGGGAAGTTAGTTGAGCTCAGTGTTGGGAAAAGGCACAAAGCTCTTGCCAAAGCATGCCTTTTTGCACAGCAGGAACCTGTGCGTCTGAGGCCGGATGGAGGGGTGTGTTTTAAAGGCAGTCTGTGTGATCTTGAATACTTTGTTTTCTATTAGTGACTGTGGCATTGTGAAATAGCAGGTGATGGAGCCATAGAGGAGGACGTCTAGATGATGCCAACTCCTTCATATGCTAAATGTATGAAAGAAAGCCTATAATACCAATATATGATAAACTATGAAAACAAATTATCCATCTTCCTCCTCGATATGGAAACTAACGACGAAGACAACGCCAGCGAAGTCCAGGACTACTCAAGGTGAAGTGCTGGATGCCAATTATATTTTCACCTACTATAATGTCCGAGATAAACAAACTGAGGGCCCAGCTGACTGCTAAAGGTGAAGTTATCGCAAACTTGAAAGACATAAACAAGGATCTGAAATGTGGAAGTGACTGAAAAGGATAAAAGTCAGTCATGATCAAAAGACGAATCAACCGTGGCCCTTGAGCAATATGCTCAAAATCGCTACAGAAAAAAAGGAAGAAGATCAAGCAAGCCGAGTCCCAAGCATCCGCTCAAACTCCATGTGTGGGGGGCAATTTCTCGGCAGGGAATTTCTCGTCAGGCACCAGGCCCATATTGGATTTTGATGCTAAGTTTGGCTATTTACAATGTAAAAAGGTACATAAAATATTGTAGCCTACACCTCACGGACTGTTATGTGTTCCACAATAATTAACTCTTGCCTACTTTCAGATATCATGGCTTGAGATTTCTTTGAGGAACGTGACTGTCAGAGAGGTGTTTCTGGGTACACATCATTTCTTTCAAGACAATGACATAAAACACGGGTTTGCATTGCAAATGAGGCCATAAACTGGGTCAAGTCGCCAGCAGAGTCTCCTGATTTAATTCCCGATCGAACTTGTTTGGCATCAACTGAAAACATTCATCCGTAACTCTGCCATGCCGACAGGCAAAGATGAACTGGTCAAGGCCATCAAGATGTTTTGGctagagaaattgatgatacaacaatgcaacaaatacatt
>XR_005052192.1
AATGGGTCCTTGGTGGAAGAAGGAGCGACAAGAAAATATGAATTACGCAGGTTGCACAGGCCAGTGGCACCATCTGCTGTTCAACTGCTTTGGCAGGACAACGCCAGCGAAGTCCAGGACTACTCAAGATGCCAATTATATTTTCACCTACTATAATGTCCGAGATAAACAAACTGAGGGCCCAGCTGACTGCTAAAGGTGAAGTTATCGCAAACTTGAAAGACATAAACAAGGATCTGAAATGTGGAAGTGACTGAAAAGGATAAAAGTCAGTCATGATCAAAAGACGAATCAACCGTGGCCCTTGAGCAATATGCTCAAAATCGCTACAGAAAAAAAGGAAGAAGATCAAGCAAGCCGAGTCCCAAGCATCCGCTCAAACTCCATGTGTGGGGGGCAATTTCTCGGCAGGGAATTTCTCGTCAGGCACCAGGCCCATATTGGATTTTGATGCTAAGTTTGGCTATTTACAATGTAAAAAGGTACATAAAATATTGTAGCCTACACCTCACGGACTGTTATGTGTTCCACAATAATTAACTCTTGCCTACTTTCAGATATCATGGCTTGAGATTTCTTTGAGGAACGTGACTGTCAGAGAGGTGTTTCTGGGTACACATCATTTCTTTCAAGACAATGACATAAAACACGGGTTTGCATTGCAAATGAGGCCATAAACTGGGTCAAGTCGCCAGCAGAGTCTCCTGATTTAATTCCCGATCGAACTTGTTTGGCATCAACTGAAAACATTCATCCGTAACTCTGCCATGCCGACAGGCAAAGATGAACTGGTCAAGGCCATCAAGATGTTTTGGctagagaaattgatgatacaacaatgcaacaaatacatt

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002473726.2 False 1392 mRNA 0.40 5 56069205 56079673
XR_005052192.1 True 854 mRNA 0.43 6 56069205 56079783

Neighbor

gene id symbol gene type direction distance location
LOC110525505 LOC106573040 coding downstream 268166 55744407 ~ 55801039 (-)
LOC110525476 LOC106573024 coding downstream 940935 55071579 ~ 55128270 (-)
LOC118964914 NA coding downstream 1034946 54978911 ~ 55034259 (-)
LOC110525471 NA coding downstream 1102652 54963456 ~ 54966553 (-)
LOC110525462 LOC106561729 coding downstream 1134561 54905357 ~ 54934644 (-)
LOC110521481 LOC106573508 coding upstream 455886 56535669 ~ 56544298 (-)
smoc2 smoc2 coding upstream 711838 56791621 ~ 56873384 (-)
cdh23 cdh23 coding upstream 824826 56904609 ~ 57560442 (-)
LOC110525582 fgfr2 coding upstream 2089707 58166565 ~ 58282805 (-)
LOC110532479 ate1 coding upstream 2273862 58353645 ~ 58535096 (-)
G61531 NA non-coding downstream 171046 55897741 ~ 55898159 (-)
G61530 NA non-coding downstream 228869 55840143 ~ 55840336 (-)
G61529 NA non-coding downstream 229396 55838753 ~ 55839809 (-)
G61564 NA non-coding downstream 232654 55836296 ~ 55836551 (-)
G61563 NA non-coding downstream 235277 55832825 ~ 55833928 (-)
G61722 NA non-coding upstream 81339 56161122 ~ 56161351 (-)
G61730 NA non-coding upstream 85526 56165309 ~ 56165704 (-)
G61732 NA non-coding upstream 86016 56165799 ~ 56166059 (-)
G61744 NA non-coding upstream 98406 56178189 ~ 56178408 (-)
G61751 NA non-coding upstream 104295 56184078 ~ 56184536 (-)
G60624 NA other downstream 865463 55203417 ~ 55203742 (-)
G60614 NA other downstream 875482 55193297 ~ 55193723 (-)
G60572 NA other downstream 914947 55150241 ~ 55154258 (-)
G60516 NA other downstream 998306 55070392 ~ 55070899 (-)
G61715 NA other upstream 73647 56153430 ~ 56153918 (-)
G61978 NA other upstream 445187 56524970 ~ 56533975 (-)
G63093 NA other upstream 955884 57035667 ~ 57062848 (-)
G63328 NA other upstream 1317411 57397194 ~ 57398488 (-)
G65147 NA other upstream 2704959 58784742 ~ 58785617 (-)

Expression


Co-expression Network