LOC110521481 (LOC106573508)


Basic Information

Item Value
gene id LOC110521481
gene name LOC106573508
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 56535669 ~ 56544298 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021599100.2
ATGTTCCTTGTGTTCTTCCTGGGACTCTACCTGGCGACAGGTGCGTTTCCCTCCTCGGTGAGTGCGTGCCCGTCACAGTGCAGCTGTTTTTTTCACAACCTAAGTGATGGATCTAAGGCCAGGAGTGTCATTTGCAATGACCCTGAGATCTCCCTTGTGCCTGCCAATTTCCCCGTGGACACGTCCAAGCTGCGTATCGAGAAAACAGCCATCCAACGGATCCCAAGTGAAGCCTTCAACTATCTCCGAAATCTGGAGTTCCTTTGGATGTCCTTTAACGTGCTGTCCGCTCTCAACTCGGACAGTTTCCGTGGGCTGCTAGATCTGGAGGAGCTGAGACTGGATGGGAATGCCCTCACTTCGTTCCCCTGGGAGTCTCTTATGGATATGTCCAGCCTCAGGCTGCTGGACTTGCATAACAACCGGTTGACCTCAGTTCCCGCAGACGCCACAATGTATATAAAAAACCTGACCTACCTGGATCTATCCAGCAACAACCTTCTGACTGTCCCGGCCGAGGTGCTAGCCACTTGGCTAACAGTTAAATCTTCGCATGGCCCAGATAGCTCCAAAATGATACTTGGTCTCCATGACAACTCCTGGGTGTGTGACTGCCGCCTGTACGACCTGATCCAGTTCCAGAAGTCGCCAACGCTCTTCGTGGCATTAATCGACACGCGCCTCCGCTGCTCCGCCCCCGAGAGCCtgtcaggtgttctgttcagCGACGCCGAGGGGCGGAGATGCCAGGCGCCGCGCATTCACACAGCAGTGGCGCGAGTCCGCAGCGCCTTGGGAAACAATGTGCTTCTGCGCTGCGGGACCATCGGCATTCCCAGTCCTGATCTGGCCTGGCGGAGGGCGGATGGGAAAGCCCTGAATGGGACAGTCCAGCAGGAGAACTCCAAGGAAGGCATCGTCTGGTCAATCCTCAGTGTCCCGGCCGTGTCCTACCGTGACTCAGGGAAGTATGTCTGCAAGGCCAATAACTACGCCGGCAATGCCGAGGCCGTCATCTCCCTAGTTATCTCTGAAGCACCCCCAAAacccgacaacaacaacaacctaaCCAGCGTGGTTGCTGCTGCcgtaaaaaaaaacaaagtcAAGAAACCCAATGGGATAGGGAAAGCAGCATACCAGGAGAAACTGGTGGCTAGGGTAGGGGTTCCCACCACCAGCCCTCCACCCCCACTTGTTGTGTTGGACTCCAGCCCTGCGCCTGAGGGTGTGGGGAGTGTAGCAGATAGAGCCATCCCTGGACCAACCACTTTGCCTAGTCCAGACGGACTCCTGGAGCTGGAGAAAACCAACCTGAGCAACCTGGCCCAGGCACAGTATGACCCGGACCGGATAGTTcgctctgtcaaggtgttgggCGACACAGAGAACACCATCACCCTGAACTGGCGGGCACCCAAGGCCAAGAACACCACAGCTTTCAGCGTGCTCTACGCTGTCTTCGGTGAGCGGGACATGCGCAAGATCAATGTGGCGGCGGGCCAGAATCGCGTCTTCATCGAGGGCCTGGTGCCCAAGACCAAGTACATTGCTTGCGTTTGCGTCCGGGGCCTGATCCCCAAGAAGGAGCAATGCGTCATCTTCTCAACCGATGAGGCGGCCAGCGCAGCCGGCACCCAGAAGCTCATCAACGTCATCGTGATCACGGTGGCGTGCGTCATCGCCGTGCCGCTCACCGTCATCGTGTGCTGTGGCGCACTCAAGAGGCGCATCCAGAAGATGTGGGGAAAGAAGTCCAAGGACATCCAGGATTCGTACGTGACTTTTGAGACGCTGTCCCCCGGGACCAAGGCTAAAGGTTTGGATGGTGAGTACCTGACCAGACTCAACCCTGAGGAGTCCAACCGACTGCTGTCGGCCCGCTCCAGTCTGGACTCAGAGGCCACGGCTAAGATAGAGGGACAGCCCAACGAGTACTTCTGCTGA

Function

NR:

description
leucine-rich repeat, immunoglobulin-like domain and transmembrane domain-containing protein 1

GO: NA

KEGG:

id description
K24491 LRIT; leucine-rich repeat, immunoglobulin-like domain and transmembrane domain-containing protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021599100.2 True 1947 mRNA 0.57 4 56535669 56544298

Neighbor

gene id symbol gene type direction distance location
LOC110525190 LOC106573044 coding downstream 388265 55901897 ~ 56147404 (-)
LOC110525232 NA coding downstream 455886 56069205 ~ 56079783 (-)
LOC110525505 LOC106573040 coding downstream 734630 55744407 ~ 55801039 (-)
LOC110525476 LOC106573024 coding downstream 1407399 55071579 ~ 55128270 (-)
LOC118964914 NA coding downstream 1501410 54978911 ~ 55034259 (-)
smoc2 smoc2 coding upstream 247323 56791621 ~ 56873384 (-)
cdh23 cdh23 coding upstream 360311 56904609 ~ 57560442 (-)
LOC110525582 fgfr2 coding upstream 1625192 58166565 ~ 58282805 (-)
LOC110532479 ate1 coding upstream 1809347 58353645 ~ 58535096 (-)
LOC110525605 LOC106576888 coding upstream 2020932 58565230 ~ 58569247 (-)
G61976 NA non-coding downstream 40260 56494084 ~ 56495409 (-)
G61975 NA non-coding downstream 42532 56488406 ~ 56493137 (-)
G61877 NA non-coding downstream 51418 56482665 ~ 56484251 (-)
G61871 NA non-coding downstream 60041 56473369 ~ 56475628 (-)
G61868 NA non-coding downstream 71641 56463384 ~ 56464028 (-)
G62009 NA non-coding upstream 25164 56569462 ~ 56598254 (-)
G62026 NA non-coding upstream 54370 56598668 ~ 56598996 (-)
G62030 NA non-coding upstream 58255 56602553 ~ 56602811 (-)
G62034 NA non-coding upstream 63089 56607387 ~ 56608282 (-)
G62035 NA non-coding upstream 64120 56608418 ~ 56608709 (-)
G61978 NA other downstream 1694 56524970 ~ 56533975 (-)
G61715 NA other downstream 381751 56153430 ~ 56153918 (-)
G61563 NA other downstream 702309 55832825 ~ 55833928 (-)
G60624 NA other downstream 1331927 55203417 ~ 55203742 (-)
G60614 NA other downstream 1341946 55193297 ~ 55193723 (-)
G63093 NA other upstream 491369 57035667 ~ 57062848 (-)
G63328 NA other upstream 852896 57397194 ~ 57398488 (-)
G65147 NA other upstream 2240444 58784742 ~ 58785617 (-)
LOC110525695 LOC106576879 other upstream 2600075 59144373 ~ 59199471 (-)
LOC110526097 LOC106576849 other upstream 3885909 60430184 ~ 60495300 (-)

Expression


Co-expression Network