LOC110525521 (LOC106576899)


Basic Information

Item Value
gene id LOC110525521
gene name LOC106576899
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 56551748 ~ 56596653 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021605703.2
TTGACATCACAGGCATCCTTCTCCAGACGGTGGTCGCACACAGACACAAAGGCTTGTTGTGTACAACTAATTCAGCGCTTTAGAGTAGCGGTGTGTAAATACGTGGTAGGGGGCAGCTGTTAGTGTTATGTTCAGTAAGACATTCTTATGCGGATtggtgcaagagagagagagagctttacaTAATTACGTGCATGCTTTTTCACGTGAAATGCTCCGTTAGAAGCGAGTTCCGGTAGGTTAGAGGCACATCTTTAAGCAAGCGGACAGTAACGAGTAAGTAGGTCAGGGATATTTGCACTTTATTTGTATGAAAAATCGCATTCAAGATGGTGTCTTCCCACCCTTTACCGAATGGCTTCTCGGAAATTGATGTGTTCTCTTTAGGATCTTGTCTACTCGTTGAGGGTCTTCTGGGATTCTTCCTGAATGCTGTGACAGTCGCTGCTTTCATAAAAATAAGAGAACTGAGAACCCCCAGCAATTTCCTAGTCTTTAGCTTGGCGTTGGCTGATATGGGCATCTCCGCGAATGCAACCATTGCCGCTTTCTCCAGCTTTCTGAGGTACTGGCCCTATGGCTCTGATGGCTGCCAGACTCATGGCTTCCAGGGTTTCGTGACAGCTCTCGCCAGCATCCACTTCATTGCTGCCATCGCATGGGACAGATACCACCAGTACTGCACAAGGACAAAGCTACAGTGGAGCAGTGCCATCACTCTGACTATCTTCATCTGGCTGTTCACCACCTTCTGGTCCGCTATGCCCCTCATCGGCTGGGGAGAGTATGACTACGAACCCCTCAGAACCTGCTGTACTCTGGACTACAGCAAAGGAGACAGGAACTATGtgtcctacctcatccccatggcCATTTTCAACATGGCCGTCCAGACCTTTGTTGTCATTACCTCCTACAAGTCCATCGGCCAGAAATTCAAGAAGACTGGAAACCCCAGGttcaACACTGCCACTCCCCTGAAGACATTTTTGTTCTGCTGGGGACCCTATGGAGTTCTGGCCTTTTACGCTGCTGTTGAGAATGCCAACCTGGTCTCTCCCAAGATAAGGATGCTGGCTCCTATTCTGGCAAAGACCTCTCCCACCTTCAACGTTTTCCTATATGCCCTGGGCAATGAGAACTACAGAGGAGGCATCTGGCAGTTCCTTACTGGGGAAAAGATTGAAGAGCCTCAAATTGACAACAAGACCAAATAAACTAAGCATGCGACAATCacataaacatgttttttaatttaactaggcaagtcagttaagaacaaattcatatttacaacgatggcctaggaacagtgggttaactgccttgttcaggcagAGGAGTTGATCTAGCACCGTTTTGgttgctggcccaacgctctaaccactaggctacctaccgccccaaaCAAACTGTCCTTGTTGTTTTCTAACAGGTACGAACGTTGTCGTGGATTCATTCATGTCAATGGACCTGGACTTCACCTtattgcatttgtgtgtgtttgtgtgcaagtcaaatcaaatcaaatttatttatatagcccatcgtacatcaactgatatcttaaagtgctgtacagaaacccagcctaaaaccccaaacagcaagcaatgcaggtgtagaagcaagtgACATTTTAGTCAGGGGTTAACGTGGAGTGATATTGTGGTGTTTGTTGTGACATTGGGATGTATTTTATGTTCAcattgtcatgccctgatctgtttcacctgtccttgtgattgtctccaccccctccaggtgtcgcttattttccccagtgtatttatccctttgtttcctgtctctctctgccagttcgtcttgtatgtttgtCAAGTCAAACAGTGTATTTTTCCCATtctccttttgctattctctttttGATAGTCTTCCGGGTTTTGACCCCTGACTGGACTACTTtcccgcctgcctgatcatcctgcctgccctgaccttgattctgccagCCCTTCGGTACTTTTTGAGCTCTGAAATGTTTTTGACCCTTTTGCCTTACCATTCTCTTGCCTTACCCTATTGGATTATTAAATATTGTaggactccaac
>TU68758
TAAATACGTGGTAGGGGGCAGCTGTTAGTGTTATGTTCAGTAAGACATTCTTATGCGGATtggtgcaagagagagagagagctttacaTAATTACGTGCATGCTTTTTCACGTGAAATGCTCCGTTAGAAGCGAGTTCCGGTAGGTTAGAGGCACATCTTTAAGCAAGCGGACAGTAACGAGTAAGTAGGTCAGGGATATTTGCACTTTATTTGTATGAAAAATCGCATTCAAGATGGTGTCTTCCCACCCTTTACCGAATGGCTTCTCGGAAATTGATGTGTTCTCTTTAGGATCTTGTCTACTCGTTGAGGGTCTTCTGGGATTCTTCCTGAATGCTGTGACAGTCGCTGCTTTCATAAAAATAAGAGAACTGAGAACCCCCAGCAATTTCCTAGTCTTTAGCTTGGCGTTGGCTGATATGGGCATCTCCGCGAATGCAACCATTGCCGCTTTCTCCAGCTTTCTGAGGTACTGGCCCTATGGCTCTGATGGCTGCCAGACTCATGGCTTCCAGGGTTTCGTGACAGCTCTCGCCAGCATCCACTTCATTGCTGCCATCGCATGGGACAGATACCACCAGTACTGCACAAgacctgagccctaggaccatgcgtcaggactacctggaatgatgactccttgctgtccccagtccacctgaccttgccgctgttccagtttcaactgttctgcctgcgtctatggaaccctaaactgttcatttttactcttgaggtgctgtcctgttgcaccctctacaaccgatgtgatctccacccggcacagccagaagaggactggccacccctcatagcctggttcctctctaggtttcttcctaggtttttgcctctctagggagtttttctaggggtgtgttagaataccattttggcattttgtatatagttatttgtttcaaaatgtataccttcaccaatttggccacttgggtacatttgggctacttgtgtgggacacctgggtgacttcatgataaatgtcatgtagcacactcattttggaagttatcattctgaaactttgcacaagtactgttgccgtcttatatttttcactgaaattgtccccatcatcctatctgaatgtttgttttatcttgttcattttaaagatgttGATACAAAAAGAAAAAGCAaacgtatgttttttttcattgttttatctaaacaaTATCTATTGTgttttattctcctacattacaatcacatttacacaaacttcagagtgttttctttcaaatggtaccaagaatatgcatatccttggttctgtgcctgagctacaggctgttagatttgggtatgtcttcaggtggaaattgcacaaagtagggggggagCTGCAAGAGgttttaaggtcctggagtggcctagccagtctccagaccttaatcccatagaaaatctgtggagggagctgaaggttcgacaTTCCAAACGTTAGCcttgaaaccttaatgacttggagaagatctgcaaagaggagtgggacaaaatccctcatgagatgtgtgcaaacctggtggccaactacaagaaacgtctgacctctgtgattgccaacaagggttttgccaccaagtactaagtcatgttttgcagagggttcaaatacttatttccctcattaaaatgaaaataaatctttaacatttttgacatgcgcttttctggatttttttgttgttattctgtctctcactgttcaaataaacctac

Function

NR:

description
RPE-retinal G protein-coupled receptor-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021605703.2 False 2073 mRNA 0.46 7 56551748 56596653
TU68758 True 1744 lncRNA 0.43 4 56551843 56572356

Neighbor

gene id symbol gene type direction distance location
LOC118964919 NA coding upstream 526835 55976159 ~ 56024913 (+)
LOC110525514 LOC106573043 coding upstream 721562 55815371 ~ 55830186 (+)
LOC110525494 LOC106573015 coding upstream 813331 55674086 ~ 55738417 (+)
LOC110532459 NA coding upstream 879904 55562420 ~ 55671844 (+)
LOC110532453 reln coding upstream 1028524 55226539 ~ 55523230 (+)
eif3s6ip LOC106576896 coding downstream 297599 56894252 ~ 56904226 (+)
vsir cssa18h10orf54 coding downstream 438955 57035608 ~ 57062851 (+)
LOC110525562 LOC106576893 coding downstream 1025614 57622267 ~ 57765398 (+)
LOC118964920 NA coding downstream 1097845 57694498 ~ 57722025 (+)
wdr11 wdr11 coding downstream 1209481 57806134 ~ 57940604 (+)
G61892 NA non-coding upstream 36598 56514518 ~ 56515150 (+)
G61891 NA non-coding upstream 54472 56497013 ~ 56497276 (+)
G61889 NA non-coding upstream 55266 56495930 ~ 56496482 (+)
G61887 NA non-coding upstream 57750 56493730 ~ 56493998 (+)
G61883 NA non-coding upstream 61948 56489585 ~ 56489800 (+)
G61962 NA non-coding downstream 3333 56599986 ~ 56600305 (+)
G61965 NA non-coding downstream 7022 56603675 ~ 56603929 (+)
G61967 NA non-coding downstream 10896 56607549 ~ 56607946 (+)
G61968 NA non-coding downstream 12833 56609486 ~ 56610491 (+)
G62050 NA non-coding downstream 30346 56626999 ~ 56627248 (+)
G61806 NA other upstream 299733 56249888 ~ 56252015 (+)
G61804 NA other upstream 303978 56246584 ~ 56247770 (+)
G61284 LOC106573044 other upstream 521377 56019476 ~ 56030371 (+)
G61202 LOC106573044 other upstream 628372 55905508 ~ 55923376 (+)
G59963 NA other upstream 1830285 54721188 ~ 54721463 (+)
G63958 NA other downstream 1569912 58166565 ~ 58168178 (+)
G63959 fgfr2 other downstream 1624869 58221522 ~ 58223130 (+)
G64292 NA other downstream 1990205 58586858 ~ 58587585 (+)
G64315 NA other downstream 2068681 58665334 ~ 58665906 (+)
G64338 NA other downstream 2102643 58699296 ~ 58700379 (+)

Expression


Co-expression Network