vsir (cssa18h10orf54)


Basic Information

Item Value
gene id vsir
gene name cssa18h10orf54
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 57035608 ~ 57062851 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036980732.1
GAGGAGCCAGCGCGCATGTGCGGTTTTAGTTGGAGTGCATTATTTTGCCAACAGTATATCCTCCTGCAAGACATCAAGTCACAAAAATTTGCCAATGGAGACGTGGCCCATCCTCACACCCGCCTGACTGTCAATGCCCCCCACCTTTCCTACATGTGCGAGGTGGGTGCCAATGTCACCCTGCTCTGTGCCCAGAAAGGTGCCAAGCTGCACCCCTCGGACCACCTGCATCAAAGCTGGCTTTTCACCCCCCACTCAGCTGAGCATTGCCATGACAAGGTGCACCCCCGCGAACACAATCACCGGGGCAACCATTCCAGTGCGGCGCTTCCTTGGGGGGTAAAGTACGGGGCAAGCGAAGAGTCTTTCTGGGTGCAACTACAGCTTGTGAACAATTCTGACCAAGGGCGTTACTGCTGCCTCTCCCTGGATATTAACAATGGCAAGGTGGTGCAGAGGACGCATAGCCACATCTTTCTCACTATCACACCTCggAAAAGAGATGAGGCGAAATGCACTCTATTGGACATCAAGCCAGCAGAAGTATCCTCAGGGTCAGTGACTGCAGGCCTGGCCACAGCTGCTTGCATCATGGCTATTCTCTCTTTGCCCATCATCATGGTGTTAGTGTACAAGCAAAGACAATCCGCCCAGTCCAGCCAACGTGCACACGAGCTGGTGAGAATGGACAGtGAAGCTGCGGGCCATGAGAACCCAGTATTTCTGGGGGTCTCACCCCCAGGCCAGGCTAAGACCAGGACTGTGTCTCAAATCATGACCAGGCAGTCCTCAGAGACAGGCCGACACCTGCTACTGTCCGACCCTGGCACCCCCCTATCTCCTCCCGCACACGGAGTTGTCTTCTTCCCAGAACAGGATCCCATCCTAGAGTCTCCTGATTTCCTGCATGTGTAGAGAGAAGCAGTCAATGGCTCCCTAACCCAGAAACACCTTGTGGTTAGTTATTCATCGTCACTCTGCCATGTCACCCTGAAGCCTGTCTCACAACCTTCTCTGCTgggggagctctctctctctgtgtaccgcATCCTGGATGgatgggagagggaaggaggggacagTTTCTTCTAAAATAAATGTTCCACCTGCAACAACAACTGGAGGAGgccaaagaggggggggggggatttgttcTCGACACTTGTGTTGCAGTGGGGGCCCGCTAAGTATGTGACGCACCGTCTGACCACTGACGACAGCTCAAGGACCAGCAGGTGCTCCTGATCTGATGTCCCAGGACTGTACTGAGGAGGATGGGGGGAGTGTGGGTGCAGGGTGGGCGGTAGAGGATACAAAGCAACTCCTGTGGACTCTTGATGATATGCTCCTCACCATTTCCCTCACCATTTTCCCCCATATAGGGCCCGTtccccggacacagattaagcatCAATCTAGACAGAAAACAGTGTAAACTTTGGTTTAGACATTTGTTTTCCACTAATATTTGACAAACCtatttttcagtggcaattgACGAGACTGACTAGACAGACCTAGAAAAAACGAACTGAACGAAAGTGATTTTTCAATACAGTTGACTAAAATGAGACACGACAACATCTACCTATCTCTGTAGTGGACAGGACAATCGTAGACTCTTTAGTGGACAGGACAATCGTTTTTGAACGTTTTTGAACAAATCTAGCACTTTTCAGTGATAAGCACAATTAATATTAGCAGGACAGATGTAGTTATTTTCAGCAGTGGGAAGGATGCACCACACCCGGCACACACAACCTCCATCAGCTGGTGAGCTGGGGGGGAGCAAGCGATGAGTGTGGACAGGCTTCGCTCCAGCTCCGTCTTCGATTAGACACATTGCGCAGGCAACTCTTCTTAATTTCCCGACATTGCGCAGGCAACTCTTCTTAATTTCCCGTAGCTAACCAGTCACCACTAGCATTCTAGTCAGCTACCCTTTGCCTGGTTAAGAAACACAAGCTGCTTTACAAAATGTAAAACAATAGCAGCATTGAGTTGAACAGTGCAACTACAGTCTAGCGATGTTCTTCTCTTCCTTGAGTAGAGAAAAGTAAGCTGTTTTTTGAATTTGTAGTCTTCGCGCAACCCTCCCACCTTCCCCACTGCCTTTCATAGGCAGGTTCTGTAGCCaagtctccctcttttcctcagaCAAAACGCTTGATGCTAGCCCTTACTGTTCAAAAGATATGACCCAGCTCTATGTTGTTTCTTTTTATTGTGCATTGGCGGGTTGCATTTTATATTCATAAAGAATATTGTGGGCCGTGCTAAAAGTAGGCTACTTGCGGACCAGACCGTTAACCATTTGTTTAGACTACaccttgttcagtcatgttacctcaatagctagctatagctaacaAACTGGGGCTCGTTCAGCAGTATGAAACTTTTTggaatgttcagatagaaatatgctatgtagaacaaacatgcctctgacATTTTTCTACTGAACGTGGCTCTGGTATTACCAGTAGCCCACTGTATATGCAAACATTCGGTGGCACAGAAAGAAAAGAAGAAAGGGATTGCAAAAAATTGATTGACTAAATTCTTCTTGCCACTACACCTATATCTGACTCGGTAAATAGAGTTAATGTGCACCCAGTGACTCGAGCACtgggactttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgatatctaTGCAATATGAATTATGTGAATAAAATGAAAGAGCATTTAGTTGACTAAAATGGCCCATTGTTTTCTTCATTTTGACAATAACTAGATTAAatcattattaaaaaaatgttttactaagACGTAATATTTTTGTCAAAATTACTAAGACTAGACTAAATCTAAAAAAGAGGGACACAATtaaatggagattctccattgaaagtgcttCTTAGTCCAACACCATTAGCTTTATCTGTGTCCTGGAAACTGGCCCATAGTGTTCTACTTCTTTCTATGATGATTCCCTCTTCCTATGGCTCTGATATGCATATTCAGCACATTTGCTTGTGCCAAAGTGATCAGGGTAGTAAGAGGTACCCATGTGCTGACAGTAGTCTTTTAAGGCCATTTCCAACCAGCCTTAAACAATTGTTTCTAAAAATGTGTTTCACTGAGCTGTTGTAACGAGAccaaagccccacttttatttaTCTAAACGTCCCATTCTTGTGTTGTTCCTCTTTCCCCTTTTATATATTTCACTACCTAAAATACTGTGTTTCTGTAacccccctccatcccttcccTTTCCTCGCTCTTATTCCTTCCCACACCCTTCTCTGCACGTAACAATGTCCAAATATTCAACCAGTACTAGAAACTGTCAAATAAATATTAGAGATATATTGCTATGCTGGATGGTCTGTTTTTGAAGAGAAGTGTCAATTTTGGCTAGTGGATGGATCTAGTAACCCAAACTCAACGAGCCAAATGCCTTCACTGCCAAGATGACCAACGTGTTTATTCCATGGTGTTCTTGTGTTTACTGTTTTGTGATATCCTTTGGCATATTTTGTGCTTATACTTGATTATTTGTTATCTTTATGTTTATCTATCTGTAAGTATACATAATCGAATACTACTGTAGATATTAGATAAGGGGTGTTCAGTGAATTGTAAAAAAAACCACCCTGAaattagtagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgtgtgtgtgtgtgtgtgtgtgcgtgtgtgtgtaatagcCAAACAGCAGCAGCTTTGGCAACACCATATGAAATAAAGCCTTTCccaaaaataatgaaataaaatgCTGATGTAATTTTTTTCTATAATAAATCGGCGCTCTTAAACCTT
>XM_021605762.2
GCGCGCATGTGCGGTTTTAGTTGGAGTGCATTATTTTGCCAACAGTATATCCTCCTGCAAGACATCAAGTCACAAAAATTTGGTAGGACTACTTGTAACTTACTTTTACTAGTGACATTGTAGCATAAAGTGTCACGTGTCAAAGATTGTTATTCCAACGCAGTTAAAATAATTAACGTATCAGCAGagcaaaaaaaatatgtttgaagGAAGATCAATATTAAAAAGTAGGCTACATAGGCGACAGAAGACAATAATGACGTGGGAATTATACAGCAGAGAAACTTTACGGATCCATTTGCTGCTGAGGTTTCTGCTCTATTTTCACCTGGCGACCGTGGTTGGAGCCAATGGAGACGTGGCCCATCCTCACACCCGCCTGACTGTCAATGCCCCCCACCTTTCCTACATGTGCGAGGTGGGTGCCAATGTCACCCTGCTCTGTGCCCAGAAAGGTGCCAAGCTGCACCCCTCGGACCACCTGCATCAAAGCTGGCTTTTCACCCCCCACTCAGCTGAGCATTGCCATGACAAGGTGCACCCCCGCGAACACAATCACCGGGGCAACCATTCCAGTGCGGCGCTTCCTTGGGGGGTAAAGTACGGGGCAAGCGAAGAGTCTTTCTGGGTGCAACTACAGCTTGTGAACAATTCTGACCAAGGGCGTTACTGCTGCCTCTCCCTGGATATTAACAATGGCAAGGTGGTGCAGAGGACGCATAGCCACATCTTTCTCACTATCACACCTCggAAAAGAGATGAGGCGAAATGCACTCTATTGGACATCAAGCCAGCAGAAGTATCCTCAGGGTCAGTGACTGCAGGCCTGGCCACAGCTGCTTGCATCATGGCTATTCTCTCTTTGCCCATCATCATGGTGTTAGTGTACAAGCAAAGACAATCCGCCCAGTCCAGCCAACGTGCACACGAGCTGGTGAGAATGGACAGtGAAGCTGCGGGCCATGAGAACCCAGTATTTCTGGGGGTCTCACCCCCAGGCCAGGCTAAGACCAGGACTGTGTCTCAAATCATGACCAGGCAGTCCTCAGAGACAGGCCGACACCTGCTACTGTCCGACCCTGGCACCCCCCTATCTCCTCCCGCACACGGAGTTGTCTTCTTCCCAGAACAGGATCCCATCCTAGAGTCTCCTGATTTCCTGCATGTGTAGAGAGAAGCAGTCAATGGCTCCCTAACCCAGAAACACCTTGTGGTTAGTTATTCATCGTCACTCTGCCATGTCACCCTGAAGCCTGTCTCACAACCTTCTCTGCTgggggagctctctctctctgtgtaccgcATCCTGGATGgatgggagagggaaggaggggacagTTTCTTCTAAAATAAATGTTCCACCTGCAACAACAACTGGAGGAGgccaaagaggggggggggggatttgttcTCGACACTTGTGTTGCAGTGGGGGCCCGCTAAGTATGTGACGCACCGTCTGACCACTGACGACAGCTCAAGGACCAGCAGGTGCTCCTGATCTGATGTCCCAGGACTGTACTGAGGAGGATGGGGGGAGTGTGGGTGCAGGGTGGGCGGTAGAGGATACAAAGCAACTCCTGTGGACTCTTGATGATATGCTCCTCACCATTTCCCTCACCATTTTCCCCCATATAGGGCCCGTtccccggacacagattaagcatCAATCTAGACAGAAAACAGTGTAAACTTTGGTTTAGACATTTGTTTTCCACTAATATTTGACAAACCtatttttcagtggcaattgACGAGACTGACTAGACAGACCTAGAAAAAACGAACTGAACGAAAGTGATTTTTCAATACAGTTGACTAAAATGAGACACGACAACATCTACCTATCTCTGTAGTGGACAGGACAATCGTAGACTCTTTAGTGGACAGGACAATCGTTTTTGAACGTTTTTGAACAAATCTAGCACTTTTCAGTGATAAGCACAATTAATATTAGCAGGACAGATGTAGTTATTTTCAGCAGTGGGAAGGATGCACCACACCCGGCACACACAACCTCCATCAGCTGGTGAGCTGGGGGGGAGCAAGCGATGAGTGTGGACAGGCTTCGCTCCAGCTCCGTCTTCGATTAGACACATTGCGCAGGCAACTCTTCTTAATTTCCCGACATTGCGCAGGCAACTCTTCTTAATTTCCCGTAGCTAACCAGTCACCACTAGCATTCTAGTCAGCTACCCTTTGCCTGGTTAAGAAACACAAGCTGCTTTACAAAATGTAAAACAATAGCAGCATTGAGTTGAACAGTGCAACTACAGTCTAGCGATGTTCTTCTCTTCCTTGAGTAGAGAAAAGTAAGCTGTTTTTTGAATTTGTAGTCTTCGCGCAACCCTCCCACCTTCCCCACTGCCTTTCATAGGCAGGTTCTGTAGCCaagtctccctcttttcctcagaCAAAACGCTTGATGCTAGCCCTTACTGTTCAAAAGATATGACCCAGCTCTATGTTGTTTCTTTTTATTGTGCATTGGCGGGTTGCATTTTATATTCATAAAGAATATTGTGGGCCGTGCTAAAAGTAGGCTACTTGCGGACCAGACCGTTAACCATTTGTTTAGACTACaccttgttcagtcatgttacctcaatagctagctatagctaacaAACTGGGGCTCGTTCAGCAGTATGAAACTTTTTggaatgttcagatagaaatatgctatgtagaacaaacatgcctctgacATTTTTCTACTGAACGTGGCTCTGGTATTACCAGTAGCCCACTGTATATGCAAACATTCGGTGGCACAGAAAGAAAAGAAGAAAGGGATTGCAAAAAATTGATTGACTAAATTCTTCTTGCCACTACACCTATATCTGACTCGGTAAATAGAGTTAATGTGCACCCAGTGACTCGAGCACtgggactttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgatatctaTGCAATATGAATTATGTGAATAAAATGAAAGAGCATTTAGTTGACTAAAATGGCCCATTGTTTTCTTCATTTTGACAATAACTAGATTAAatcattattaaaaaaatgttttactaagACGTAATATTTTTGTCAAAATTACTAAGACTAGACTAAATCTAAAAAAGAGGGACACAATtaaatggagattctccattgaaagtgcttCTTAGTCCAACACCATTAGCTTTATCTGTGTCCTGGAAACTGGCCCATAGTGTTCTACTTCTTTCTATGATGATTCCCTCTTCCTATGGCTCTGATATGCATATTCAGCACATTTGCTTGTGCCAAAGTGATCAGGGTAGTAAGAGGTACCCATGTGCTGACAGTAGTCTTTTAAGGCCATTTCCAACCAGCCTTAAACAATTGTTTCTAAAAATGTGTTTCACTGAGCTGTTGTAACGAGAccaaagccccacttttatttaTCTAAACGTCCCATTCTTGTGTTGTTCCTCTTTCCCCTTTTATATATTTCACTACCTAAAATACTGTGTTTCTGTAacccccctccatcccttcccTTTCCTCGCTCTTATTCCTTCCCACACCCTTCTCTGCACGTAACAATGTCCAAATATTCAACCAGTACTAGAAACTGTCAAATAAATATTAGAGATATATTGCTATGCTGGATGGTCTGTTTTTGAAGAGAAGTGTCAATTTTGGCTAGTGGATGGATCTAGTAACCCAAACTCAACGAGCCAAATGCCTTCACTGCCAAGATGACCAACGTGTTTATTCCATGGTGTTCTTGTGTTTACTGTTTTGTGATATCCTTTGGCATATTTTGTGCTTATACTTGATTATTTGTTATCTTTATGTTTATCTATCTGTAAGTATACATAATCGAATACTACTGTAGATATTAGATAAGGGGTGTTCAGTGAATTGTAAAAAAAACCACCCTGAaattagtagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgtgtgtgtgtgtgtgtgtgtgcgtgtgtgtgtaatagcCAAACAGCAGCAGCTTTGGCAACACCATATGAAATAAAGCCTTTCccaaaaataatgaaataaaatgCTGATGTAATTTTTTTCTATAATAAATCGGCGCTCTTAAACCTT

Function

NR:

description
V-type immunoglobulin domain-containing suppressor of T-cell activation

GO: NA

KEGG:

id description
K23268 VSIR, VISTA; V-type immunoglobulin domain-containing suppressor of T-cell activation

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036980732.1 False 3896 mRNA 0.45 7 57035608 57062851
XM_021605762.2 True 4152 mRNA 0.44 7 57035617 57062851

Neighbor

gene id symbol gene type direction distance location
eif3s6ip LOC106576896 coding upstream 131382 56894252 ~ 56904226 (+)
LOC110525521 LOC106576899 coding upstream 438955 56551748 ~ 56596653 (+)
LOC118964919 NA coding upstream 1010695 55976159 ~ 56024913 (+)
LOC110525514 LOC106573043 coding upstream 1205422 55815371 ~ 55830186 (+)
LOC110525494 LOC106573015 coding upstream 1297191 55674086 ~ 55738417 (+)
LOC110525562 LOC106576893 coding downstream 559416 57622267 ~ 57765398 (+)
LOC118964920 NA coding downstream 631647 57694498 ~ 57722025 (+)
wdr11 wdr11 coding downstream 743283 57806134 ~ 57940604 (+)
LOC110525578 NA coding downstream 898865 57961716 ~ 57963823 (+)
fam160b1 fam160b1 coding downstream 1745519 58808370 ~ 58838199 (+)
G62504 NA non-coding upstream 15856 57019442 ~ 57019752 (+)
G62501 NA non-coding upstream 18743 57016367 ~ 57016865 (+)
G62447 NA non-coding upstream 22876 56960399 ~ 57012732 (+)
G62415 NA non-coding upstream 123791 56911606 ~ 56911817 (+)
G62414 NA non-coding upstream 125233 56910168 ~ 56910375 (+)
G62520 cdh23 non-coding downstream 4989 57067840 ~ 57068054 (+)
G62524 NA non-coding downstream 13817 57076668 ~ 57076895 (+)
G62565 NA non-coding downstream 73988 57136839 ~ 57137089 (+)
G62566 NA non-coding downstream 75146 57137997 ~ 57138199 (+)
G62571 NA non-coding downstream 84505 57147356 ~ 57147649 (+)
G61806 NA other upstream 783593 56249888 ~ 56252015 (+)
G61804 NA other upstream 787838 56246584 ~ 56247770 (+)
G61284 LOC106573044 other upstream 1005237 56019476 ~ 56030371 (+)
G61202 LOC106573044 other upstream 1112232 55905508 ~ 55923376 (+)
G59963 NA other upstream 2314145 54721188 ~ 54721463 (+)
G63958 NA other downstream 1103714 58166565 ~ 58168178 (+)
G63959 fgfr2 other downstream 1158671 58221522 ~ 58223130 (+)
G64292 NA other downstream 1524007 58586858 ~ 58587585 (+)
G64315 NA other downstream 1602483 58665334 ~ 58665906 (+)
G64338 NA other downstream 1636445 58699296 ~ 58700379 (+)

Expression


Co-expression Network