LOC110525562 (LOC106576893)


Basic Information

Item Value
gene id LOC110525562
gene name LOC106576893
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 57622267 ~ 57765398 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036989719.1
ATGAGTGCGTCCAAGGAGAGGTTGGCATCTCAATACGCCAGTTCCCATCTGGACCCCTTTGAGCAGTCCTCTTCTGAATTAGATGCTGCCACGGATGCGCTGGATAAACTGGATGCTTCCATGGACCGGAAGaTGGCCGTGGCCCACTCCATTGCCTGTTCGTTCAGCAAGGAAATGACCGTGGAAACCTTGGACCTCCCTTCTGAATGGGAATCAGAGAGGGAGCACTGGAGTAGGAAGCCGCAGGCATTCAGATGGAGTCCCGTCGTGATTGTCCGGGAGGCATCGCTGACCCAGGCGGACTGCTGCAGGGAATTCACAGAGTTCCTGGAGCCCTTTGAGAGAGTAATCCAACCAGAGGAGCTATGGCTCTACAAAAACCCCTTGGTGGAGTCAGACCACATCCCTAAGAGGGTCATGTTCGCAATTTCTTTTCTCACTCCTTTGGCTGTGATATTCGTGGTGAAGATCATTCGGCGGACAGATAAGACAGAAATCAAGGAAGCATGTCTAGCTGTCTCACTGGCTCTAGCCTTGAATGGAGTCTTCACAAACACTATCAAGTTGATCGTTGGCAGACCCAGGCCAGACTACTTCCAGCGTTGTTTCCCAGATGGACAGGTGAATGTTAAGATGCTGTGCACCGGAGAACCATACCTGGTGTCAGAGGGACGCAAGAGTTTCCCAAGCAGCCACTCTTCTTTTGCATTCTCTGGCTTGGGCTTCACCTCCTTCTACCTGGCTGGGAAGCTGCATTGCTTCACGGACCAGGGCCGCGGGCGCAGCTGGCGTCTGTGTGCCATGTTGCTGCCCCTCTACAGTGCTGTGATGATTGCCCTGTCCCGCACCTGCGACTACAAACACCACTGGCAAGATGCCTTTGTTGGAGGGGTGATCGGCCTGCTCTTTGCCTACATCTGCTACCGGCAGCACTACCCCCCGTTCCTGCACATGGACTGCCATCTACCTTACGCCAGTCTGGCCAAAGCCCCCCACCTCGTCTCTGCCCATGGCGATCCCCTGGTCCTGCCCACCGAGAACACCACCAGCATGCCTCTGAAGGGGCTGACAGTGGGGCCTGTATGA

Function

NR:

description
phospholipid phosphatase 4-like

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016020 membrane cellular_component
GO:0003824 catalytic activity molecular_function

KEGG:

id description
K18693 DPP1, DPPL, PLPP4_5; diacylglycerol diphosphate phosphatase / phosphatidate phosphatase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036989719.1 True 1086 mRNA 0.55 8 57622267 57765398

Neighbor

gene id symbol gene type direction distance location
vsir cssa18h10orf54 coding upstream 559416 57035608 ~ 57062851 (+)
eif3s6ip LOC106576896 coding upstream 718041 56894252 ~ 56904226 (+)
LOC110525521 LOC106576899 coding upstream 1025614 56551748 ~ 56596653 (+)
LOC118964919 NA coding upstream 1597354 55976159 ~ 56024913 (+)
LOC110525514 LOC106573043 coding upstream 1792081 55815371 ~ 55830186 (+)
wdr11 wdr11 coding downstream 40736 57806134 ~ 57940604 (+)
LOC110525578 NA coding downstream 196318 57961716 ~ 57963823 (+)
fam160b1 fam160b1 coding downstream 1042972 58808370 ~ 58838199 (+)
trnaa-ugc NA coding downstream 1296409 59061807 ~ 59061880 (+)
LOC110525756 NA coding downstream 1444608 59210006 ~ 59212175 (+)
G62768 NA non-coding upstream 176618 57445138 ~ 57445649 (+)
G62767 NA non-coding upstream 177624 57444307 ~ 57444643 (+)
G62746 NA non-coding upstream 213753 57408182 ~ 57408514 (+)
G62743 NA non-coding upstream 216670 57405364 ~ 57405597 (+)
G62735 NA non-coding upstream 229977 57392050 ~ 57392290 (+)
G63603 NA non-coding downstream 53789 57819187 ~ 57896831 (+)
G63950 NA non-coding downstream 346807 58112205 ~ 58113058 (+)
G64001 NA non-coding downstream 399740 58165138 ~ 58165476 (+)
G64002 NA non-coding downstream 400835 58166233 ~ 58166460 (+)
G61806 NA other upstream 1370252 56249888 ~ 56252015 (+)
G61804 NA other upstream 1374497 56246584 ~ 56247770 (+)
G61284 LOC106573044 other upstream 1591896 56019476 ~ 56030371 (+)
G61202 LOC106573044 other upstream 1698891 55905508 ~ 55923376 (+)
G59963 NA other upstream 2900804 54721188 ~ 54721463 (+)
G63958 NA other downstream 401167 58166565 ~ 58168178 (+)
G63959 fgfr2 other downstream 456124 58221522 ~ 58223130 (+)
G64292 NA other downstream 821460 58586858 ~ 58587585 (+)
G64315 NA other downstream 899936 58665334 ~ 58665906 (+)
G64338 NA other downstream 933898 58699296 ~ 58700379 (+)

Expression


Co-expression Network