LOC110525578


Basic Information

Item Value
gene id LOC110525578
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 57961716 ~ 57963823 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005052202.1
tttcagagtcgtggctgaatgaggACACGGATATATATCGTGCTGGTTTTTCTACGCATCTTCAAGACCGGACAGCGAACTCGGATAATATCCATAACTGGTGCTACATGCTGGACTCTTTGTCGATGATTGTTCACAACGCAAGAAGAGTACTGTTACAGTGGTGCTGTGACCGTTCTTCTAGATCATCCTTCGCTGGGCTTCCATTCCAGAAGTTTGCTGTGGTTTCCATTGGAGAATCAGATAAGAGTTTGCTAGTGCAGTTTGACCTGTATCTCATTTCGCTCCAGGAGGGCACCAGTGCCTTATATTTCTCAGTACTGAAGTGTTTTGATGATTTTTGCTATTGAGACACTTGCTATATTCATTGGGACTTCACTGATAAGTCATATAATCTTCATTGGATTTGTTTATTTACAATTctaatgtatatattatataactaGGGTGGGTTTTTATCAGTGTAGTTGAGatttttggtaacactttacttaacacccagcatcataacacattatgacacAGGGATAACCATAATTATGATATaacttgtcataatatggtcagaACACTGTCATGACtcatttacacctgttgtgacatactgtaccggtcaaatgtttggacacaccaactcattcaagggttcttcttcatttttactattttctacattgtagaataatattaaagacaaactatgaaataacacacaacacaaaacctGGATGGTAAATTGCTAAGGTTGGTAGCGAAATACATTGTGACTCCTGTTTGTCACACCTTCAATTTTAGCCAAGAACAAGACATGGAGGGAGGCAAAGGTCATTCTGCTTCCCAAGAATAGCAGAGCACTCTTTAATGGTTAAGTTATTTTACagaaaacaaattaacaacagacacaCATAGCCCCCGGTCTCAAGAATCCCTAGATAATTTGTTTTATTGGGTGTGCTCACCTAGTCTATAGTTGTTAGGATAATTGCCGTAAGGGAAATACTACTGTTAGTAAAGTACCATGGATAAGGTCGTTAATACTgtgaaggtaaaaaaaaaatgcattgtgCTTTTgtcagtatttgtatttattatggatccccgttagctgctgccaaagcagcagctactcttccttggggtcagaaaaattaaggcagtttataccattttaaaaacattacaatacattcacagatttcacaacacaccttaggcccctactccaccactaccacctatctagagtactaaatccatgtgtatgtattgtgcttatgttatcgtgtgtgtgcatgtgtctttgCCAATGTTAGTCTTGCTTCACAGTCCTCGCCGTTCCATAAGGTGTTGCGATGTTATATAATGTTTAGATTAGTGTATTATATCATCCACACCCAATAGCCAactctagtgcactatatacccTGTAAAGGGGTTACTGTAAATTTGACAGTTTACAGGCAGCTCGGTGGAAagtaaaattatttatttcatattaCAGTACACCCATTGTAATATAAATATGGTATCAAAGCAAGTACTGTGTAATAACATGCAGTACCATACCATAACATTGGCTGTATTATACTGTAAGAACGTACATTGTACCGTAATCCAAATAGATGGATGAATTAAATGAATGGATTAATTAAATTCATTGAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005052202.1 True 1662 mRNA 0.37 2 57961716 57963823

Neighbor

gene id symbol gene type direction distance location
wdr11 wdr11 coding upstream 23728 57806134 ~ 57940604 (+)
LOC110525562 LOC106576893 coding upstream 196318 57622267 ~ 57765398 (+)
LOC118964920 NA coding upstream 239691 57694498 ~ 57722025 (+)
vsir cssa18h10orf54 coding upstream 898865 57035608 ~ 57062851 (+)
eif3s6ip LOC106576896 coding upstream 1057490 56894252 ~ 56904226 (+)
fam160b1 fam160b1 coding downstream 844547 58808370 ~ 58838199 (+)
trnaa-ugc NA coding downstream 1097984 59061807 ~ 59061880 (+)
LOC110525756 NA coding downstream 1246183 59210006 ~ 59212175 (+)
erlin1 LOC106576878 coding downstream 1320501 59284324 ~ 59299682 (+)
si:ch211-217g15.3 LOC106576876 coding downstream 1376716 59340539 ~ 59342276 (+)
G63603 NA non-coding upstream 64885 57819187 ~ 57896831 (+)
G62768 NA non-coding upstream 516067 57445138 ~ 57445649 (+)
G62767 NA non-coding upstream 517073 57444307 ~ 57444643 (+)
G62746 NA non-coding upstream 553202 57408182 ~ 57408514 (+)
G63950 NA non-coding downstream 148382 58112205 ~ 58113058 (+)
G64001 NA non-coding downstream 201315 58165138 ~ 58165476 (+)
G64002 NA non-coding downstream 202410 58166233 ~ 58166460 (+)
G64081 NA non-coding downstream 339557 58303380 ~ 58304034 (+)
G64083 NA non-coding downstream 341083 58304906 ~ 58305109 (+)
G61806 NA other upstream 1709701 56249888 ~ 56252015 (+)
G61804 NA other upstream 1713946 56246584 ~ 56247770 (+)
G61284 LOC106573044 other upstream 1931345 56019476 ~ 56030371 (+)
G61202 LOC106573044 other upstream 2038340 55905508 ~ 55923376 (+)
G59963 NA other upstream 3240253 54721188 ~ 54721463 (+)
G63958 NA other downstream 202742 58166565 ~ 58168178 (+)
G63959 fgfr2 other downstream 257699 58221522 ~ 58223130 (+)
G64292 NA other downstream 623035 58586858 ~ 58587585 (+)
G64315 NA other downstream 701511 58665334 ~ 58665906 (+)
G64338 NA other downstream 735473 58699296 ~ 58700379 (+)

Expression


Co-expression Network