LOC110525605 (LOC106576888)


Basic Information

Item Value
gene id LOC110525605
gene name LOC106576888
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 58565230 ~ 58569247 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036980829.1
CCTACACAGTCATGATGGATCATCTTCTATGAGGGCAGGAATTTTGAGGGACGCCACTATGAGTGCAGTGGTGACTGCGCTGACATGCACTCCCACTTCTCCCGGTGTAACTCCATCCGGGTGGACAGTGGGTGCTGGGTGGCCTATGAGAAGTCTAACTATTCTGGGTACCAGTACATGCTGACAAGGGGGAAGTACCCCGACCACCACCGCTGGTCCGGCTTCAACGACTGCATCCGCTCCTGTCGCATCATCCCTGCTTATAATGGAAACTACAGGATGAAGATCTTTGAGAGATCAGACTTTGGGGGCAAGATGATGGAGCTGAGCGATGACTGTCCCAACCTGCAGGACCGCTTCCACCTGAGAGACATCTCATCCTGCAATGTCATGGAGGGCTACTGGATCCTTCATGAGCACCCCAACTACAGGGGTCGTCAGTACTTCCTACGCCCTGGCGAGTACAACAAGCACAGCGACTGGGGCAGCATGAGCTCCACCAGTGGCTCAGTGCGTCGCGTCATAGAGCTGAAGCAAACCAACCAATAAATCAGAgtctctagatctctctctcctgccaggCTAGATCTCTCTAAAAGCCTGTAGAATTCTGTACAGGGGTTGACAAAATGAGTCAATCTCAACATACGGTTGGTGTCAGGGAATAAGGAGATTCTCCTTTAATAATTAGTATCACTGGATGATAATATGACTGGGCTGAAGTAAGAAAGCAGTGTCTTGGAATCCTGGTGTAGATGTACAAAGAGCATTTAGAAGGTTTTATGCAGACAGAAGTGCATTTATACACACCCTCCGCTCACATTGAATAATTAACCAGTGGATGGTAGGATGGAACAGTATATTTAATTGTGTCCCTAATGCAGCGGCAAAGACAGTTGCAACTTCTTCCAACTGAGAAGCCTGCTTAAATTGTTGTGGTGTTTTAACAATATTCTGACCTCCTAAATTCAAACACATGAATTTGTGTCTGAGGCAAAATCACTTTGTTAACTTGTCAATGTTACACTTGTCATGGAAttgccaccagggactcaaaagTCAAACTTGAATGAATCATTCTTTATTATAATCATTCTTTATTATAATCATTCTTTATTATCAGAATGCTGGAGAGGTCACAGTCAAACTTAGATGCATAAAGTACCGGTCTGAAATGAGCTCTTTCAGGGCAGTCCTTTAAGTTCTCTTATATACTGCTTACACAGACAAGTTACTGTATGTAGGCATGGTTCATAGGCTTGGTTCCTGCATGTGTCTGGTACAGTGTCCTATCTTAACTTTTAGAACATTCTGACAAAAGGTCTGAGGAGGGGGTCATGACCGTCTCCCACTCATATCTCTACCAAGCACCCACAGGAACCAATGATTGTATGAGACAAGATGTACAAAGTTGTCTCCAGACTATGCATTTATCCTCCACATTCCCTACTTTTATCACTTCTATGATAATAATCGTTACAAATTTAATGAGATAAACACTTTCAAACCCTTCATTCTGGGTTATACAATCTAATTATTATGGTAATACTATCATCATAATAAAGGTTATGCTTCTATTAACGGCAGTGAATTTatcaaatatacacacacatacacagcatgTTAAAATTAGGCAAACTAAGCAAAAAACACACGCTGCAGCCTATTTGGCAATATGGGATCCCCAACTTCCAAATAGGGATTCCAACCAAGTTTTAAGCGTCCACTTTGTTTGTGGGGAATTATTCTTAGCAACAGTGACAATGTATTCGGCGAGATCAGGCATATTTGAAGAATTGATCTGGGACAAAAGTACAACATTTCATCGCCAAAGATTGCACGAGTGCCCCCACCTGCCAAGACTAAATCAATTACGGGCACGGTTGACCTCACCCCTCCTTCACGGCACTCATTCTTCTGGTGTTTCTTCATTTTCTTCTTCAGATAGCTTTACAGTTTGTCCTCCCAATATCACACATGTTCAAAGTGCATGGCCTTTGATCATGTCTCCATTCCAATATCTGGGGAATAATCAGATTTTCCCAAGCAGACAAATCTCTCACCTGAGCCGCCACTGTCTTTTACGGCccattatgtcttgtccatttACCTACCAGTACACCAGCAGCATGAGAGAAGTTTGGACGGGGTCTCTCTCTATGCTCGCTCCACTTGGACTCATGTTGCACTCCCGGCATAAGGCATAAGGCATAAGAGAAAAGGCATGAGAGAAAAGGCAGTTGATAGCTTCGACTGGATGCTGTGTACAAGTTTCTGGCTCAGACTCAGGTCTCAGGTAGAAGTAGTGAAGGACCATAATGAATGCCATTATCGCTATTActtcagccagttagagggggTGAGGTAGAGGGGGTGAGGTTCACACTGTTCTCAGTCAAATTATCTCTTCCCATTACTTTTAGATACCATCTGTGGTCACCTTTCGCCATAACCTGATGAGAGGA
>XM_036980823.1
TGTCCTGTTGACCTACACAGTCATGATGGGTAAGAGGCTCTCTGTTCAGATCATCTTCTATGAGGGCAGGAATTTTGAGGGACGCCACTATGAGTGCAGTGGTGACTGCGCTGACATGCACTCCCACTTCTCCCGGTGTAACTCCATCCGGGTGGACAGTGGGTGCTGGGTGGCCTATGAGAAGTCTAACTATTCTGGGTACCAGTACATGCTGACAAGGGGGAAGTACCCCGACCACCACCGCTGGTCCGGCTTCAACGACTGCATCCGCTCCTGTCGCATCATCCCTGCTTATAATGGAAACTACAGGATGAAGATCTTTGAGAGATCAGACTTTGGGGGCAAGATGATGGAGCTGAGCGATGACTGTCCCAACCTGCAGGACCGCTTCCACCTGAGAGACATCTCATCCTGCAATGTCATGGAGGGCTACTGGATCCTTCATGAGCACCCCAACTACAGGGGTCGTCAGTACTTCCTACGCCCTGGCGAGTACAACAAGCACAGCGACTGGGGCAGCATGAGCTCCACCAGTGGCTCAGTGCGTCGCGTCATAGAGCTGAAGCAAACCAACCAATAAATCAGAgtctctagatctctctctcctgccaggCTAGATCTCTCTAAAAGCCTGTAGAATTCTGTACAGGGGTTGACAAAATGAGTCAATCTCAACATACGGTTGGTGTCAGGGAATAAGGAGATTCTCCTTTAATAATTAGTATCACTGGATGATAATATGACTGGGCTGAAGTAAGAAAGCAGTGTCTTGGAATCCTGGTGTAGATGTACAAAGAGCATTTAGAAGGTTTTATGCAGACAGAAGTGCATTTATACACACCCTCCGCTCACATTGAATAATTAACCAGTGGATGGTAGGATGGAACAGTATATTTAATTGTGTCCCTAATGCAGCGGCAAAGACAGTTGCAACTTCTTCCAACTGAGAAGCCTGCTTAAATTGTTGTGGTGTTTTAACAATATTCTGACCTCCTAAATTCAAACACATGAATTTGTGTCTGAGGCAAAATCACTTTGTTAACTTGTCAATGTTACACTTGTCATGGAAttgccaccagggactcaaaagTCAAACTTGAATGAATCATTCTTTATTATAATCATTCTTTATTATAATCATTCTTTATTATCAGAATGCTGGAGAGGTCACAGTCAAACTTAGATGCATAAAGTACCGGTCTGAAATGAGCTCTTTCAGGGCAGTCCTTTAAGTTCTCTTATATACTGCTTACACAGACAAGTTACTGTATGTAGGCATGGTTCATAGGCTTGGTTCCTGCATGTGTCTGGTACAGTGTCCTATCTTAACTTTTAGAACATTCTGACAAAAGGTCTGAGGAGGGGGTCATGACCGTCTCCCACTCATATCTCTACCAAGCACCCACAGGAACCAATGATTGTATGAGACAAGATGTACAAAGTTGTCTCCAGACTATGCATTTATCCTCCACATTCCCTACTTTTATCACTTCTATGATAATAATCGTTACAAATTTAATGAGATAAACACTTTCAAACCCTTCATTCTGGGTTATACAATCTAATTATTATGGTAATACTATCATCATAATAAAGGTTATGCTTCTATTAACGGCAGTGAATTTatcaaatatacacacacatacacagcatgTTAAAATTAGGCAAACTAAGCAAAAAACACACGCTGCAGCCTATTTGGCAATATGGGATCCCCAACTTCCAAATAGGGATTCCAACCAAGTTTTAAGCGTCCACTTTGTTTGTGGGGAATTATTCTTAGCAACAGTGACAATGTATTCGGCGAGATCAGGCATATTTGAAGAATTGATCTGGGACAAAAGTACAACATTTCATCGCCAAAGATTGCACGAGTGCCCCCACCTGCCAAGACTAAATCAATTACGGGCACGGTTGACCTCACCCCTCCTTCACGGCACTCATTCTTCTGGTGTTTCTTCATTTTCTTCTTCAGATAGCTTTACAGTTTGTCCTCCCAATATCACACATGTTCAAAGTGCATGGCCTTTGATCATGTCTCCATTCCAATATCTGGGGAATAATCAGATTTTCCCAAGCAGACAAATCTCTCACCTGAGCCGCCACTGTCTTTTACGGCccattatgtcttgtccatttACCTACCAGTACACCAGCAGCATGAGAGAAGTTTGGACGGGGTCTCTCTCTATGCTCGCTCCACTTGGACTCATGTTGCACTCCCGGCATAAGGCATAAGGCATAAGAGAAAAGGCATGAGAGAAAAGGCAGTTGATAGCTTCGACTGGATGCTGTGTACAAGTTTCTGGCTCAGACTCAGGTCTCAGGTAGAAGTAGTGAAGGACCATAATGAATGCCATTATCGCTATTActtcagccagttagagggggTGAGGTAGAGGGGGTGAGGTTCACACTGTTCTCAGTCAAATTATCTCTTCCCATTACTTTTAGATACCATCTGTGGTCACCTTTCGCCATAACCTGATGAGAGGA
>XM_021605882.2
AACAGTTTGTGCTGACATGATAACTCACCTGATTTTACTAACAATGCTCTGTCCTTTTTTCGGACACATAAAAGGCTCTGGGATGAGGACAGGCCTGTCCTGTTGACCTACACAGTCATGATGGGTAAGATCATCTTCTATGAGGGCAGGAATTTTGAGGGACGCCACTATGAGTGCAGTGGTGACTGCGCTGACATGCACTCCCACTTCTCCCGGTGTAACTCCATCCGGGTGGACAGTGGGTGCTGGGTGGCCTATGAGAAGTCTAACTATTCTGGGTACCAGTACATGCTGACAAGGGGGAAGTACCCCGACCACCACCGCTGGTCCGGCTTCAACGACTGCATCCGCTCCTGTCGCATCATCCCTGCTTATAATGGAAACTACAGGATGAAGATCTTTGAGAGATCAGACTTTGGGGGCAAGATGATGGAGCTGAGCGATGACTGTCCCAACCTGCAGGACCGCTTCCACCTGAGAGACATCTCATCCTGCAATGTCATGGAGGGCTACTGGATCCTTCATGAGCACCCCAACTACAGGGGTCGTCAGTACTTCCTACGCCCTGGCGAGTACAACAAGCACAGCGACTGGGGCAGCATGAGCTCCACCAGTGGCTCAGTGCGTCGCGTCATAGAGCTGAAGCAAACCAACCAATAAATCAGAgtctctagatctctctctcctgccaggCTAGATCTCTCTAAAAGCCTGTAGAATTCTGTACAGGGGTTGACAAAATGAGTCAATCTCAACATACGGTTGGTGTCAGGGAATAAGGAGATTCTCCTTTAATAATTAGTATCACTGGATGATAATATGACTGGGCTGAAGTAAGAAAGCAGTGTCTTGGAATCCTGGTGTAGATGTACAAAGAGCATTTAGAAGGTTTTATGCAGACAGAAGTGCATTTATACACACCCTCCGCTCACATTGAATAATTAACCAGTGGATGGTAGGATGGAACAGTATATTTAATTGTGTCCCTAATGCAGCGGCAAAGACAGTTGCAACTTCTTCCAACTGAGAAGCCTGCTTAAATTGTTGTGGTGTTTTAACAATATTCTGACCTCCTAAATTCAAACACATGAATTTGTGTCTGAGGCAAAATCACTTTGTTAACTTGTCAATGTTACACTTGTCATGGAAttgccaccagggactcaaaagTCAAACTTGAATGAATCATTCTTTATTATAATCATTCTTTATTATAATCATTCTTTATTATCAGAATGCTGGAGAGGTCACAGTCAAACTTAGATGCATAAAGTACCGGTCTGAAATGAGCTCTTTCAGGGCAGTCCTTTAAGTTCTCTTATATACTGCTTACACAGACAAGTTACTGTATGTAGGCATGGTTCATAGGCTTGGTTCCTGCATGTGTCTGGTACAGTGTCCTATCTTAACTTTTAGAACATTCTGACAAAAGGTCTGAGGAGGGGGTCATGACCGTCTCCCACTCATATCTCTACCAAGCACCCACAGGAACCAATGATTGTATGAGACAAGATGTACAAAGTTGTCTCCAGACTATGCATTTATCCTCCACATTCCCTACTTTTATCACTTCTATGATAATAATCGTTACAAATTTAATGAGATAAACACTTTCAAACCCTTCATTCTGGGTTATACAATCTAATTATTATGGTAATACTATCATCATAATAAAGGTTATGCTTCTATTAACGGCAGTGAATTTatcaaatatacacacacatacacagcatgTTAAAATTAGGCAAACTAAGCAAAAAACACACGCTGCAGCCTATTTGGCAATATGGGATCCCCAACTTCCAAATAGGGATTCCAACCAAGTTTTAAGCGTCCACTTTGTTTGTGGGGAATTATTCTTAGCAACAGTGACAATGTATTCGGCGAGATCAGGCATATTTGAAGAATTGATCTGGGACAAAAGTACAACATTTCATCGCCAAAGATTGCACGAGTGCCCCCACCTGCCAAGACTAAATCAATTACGGGCACGGTTGACCTCACCCCTCCTTCACGGCACTCATTCTTCTGGTGTTTCTTCATTTTCTTCTTCAGATAGCTTTACAGTTTGTCCTCCCAATATCACACATGTTCAAAGTGCATGGCCTTTGATCATGTCTCCATTCCAATATCTGGGGAATAATCAGATTTTCCCAAGCAGACAAATCTCTCACCTGAGCCGCCACTGTCTTTTACGGCccattatgtcttgtccatttACCTACCAGTACACCAGCAGCATGAGAGAAGTTTGGACGGGGTCTCTCTCTATGCTCGCTCCACTTGGACTCATGTTGCACTCCCGGCATAAGGCATAAGGCATAAGAGAAAAGGCATGAGAGAAAAGGCAGTTGATAGCTTCGACTGGATGCTGTGTACAAGTTTCTGGCTCAGACTCAGGTCTCAGGTAGAAGTAGTGAAGGACCATAATGAATGCCATTATCGCTATTActtcagccagttagagggggTGAGGTAGAGGGGGTGAGGTTCACACTGTTCTCAGTCAAATTATCTCTTCCCATTACTTTTAGATACCATCTGTGGTCACCTTTCGCCATAACCTGATGAGAGGA

Function

NR:

description
beta-crystallin S-1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036980829.1 False 2465 mRNA 0.44 3 58565230 58569141
XM_036980823.1 False 2496 mRNA 0.44 3 58565230 58569152
XM_021605882.2 True 2576 mRNA 0.44 3 58565230 58569247

Neighbor

gene id symbol gene type direction distance location
LOC110532479 ate1 coding downstream 30134 58353645 ~ 58535096 (-)
LOC110525582 fgfr2 coding downstream 282425 58166565 ~ 58282805 (-)
cdh23 cdh23 coding downstream 1004806 56904609 ~ 57560442 (-)
smoc2 smoc2 coding downstream 1691846 56791621 ~ 56873384 (-)
LOC110521481 LOC106573508 coding downstream 2020932 56535669 ~ 56544298 (-)
habp2 habp2 coding upstream 21860 58591107 ~ 58599375 (-)
LOC110525652 LOC106576887 coding upstream 29913 58599160 ~ 58613936 (-)
ablim1a LOC106576884 coding upstream 44907 58614154 ~ 58760541 (-)
LOC110525667 LOC106576882 coding upstream 269014 58838261 ~ 58914347 (-)
LOC110525690 LOC106576880 coding upstream 355333 58924580 ~ 59134329 (-)
G64938 NA non-coding downstream 135780 58429150 ~ 58429450 (-)
G64748 NA non-coding downstream 213486 58347293 ~ 58351744 (-)
G64891 NA non-coding downstream 228150 58336727 ~ 58337080 (-)
G64886 NA non-coding downstream 235274 58329735 ~ 58329956 (-)
G64884 NA non-coding downstream 236844 58328186 ~ 58328386 (-)
G64988 NA non-coding upstream 16039 58585286 ~ 58586678 (-)
G65057 NA non-coding upstream 94703 58663950 ~ 58664149 (-)
G65058 NA non-coding upstream 95160 58664407 ~ 58664627 (-)
G65060 NA non-coding upstream 100287 58669534 ~ 58671224 (-)
G65072 NA non-coding upstream 118780 58688027 ~ 58688267 (-)
G63328 NA other downstream 1166742 57397194 ~ 57398488 (-)
G63093 NA other downstream 1502382 57035667 ~ 57062848 (-)
G61978 NA other downstream 2031255 56524970 ~ 56533975 (-)
G61715 NA other downstream 2411312 56153430 ~ 56153918 (-)
G61563 NA other downstream 2731870 55832825 ~ 55833928 (-)
G65147 NA other upstream 215495 58784742 ~ 58785617 (-)
LOC110525695 LOC106576879 other upstream 575126 59144373 ~ 59199471 (-)
LOC110526097 LOC106576849 other upstream 1860960 60430184 ~ 60495300 (-)
G68736 NA other upstream 3113031 61682278 ~ 61686308 (-)
LOC110526417 LOC106576819 other upstream 3412484 61981652 ~ 61983330 (-)

Expression


Co-expression Network