LOC110525652 (LOC106576887)


Basic Information

Item Value
gene id LOC110525652
gene name LOC106576887
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 58599160 ~ 58613936 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021605977.2
aggctCATAGAAGGCCTATAGTTTTGAAGTATGGTATGAATCAAAGTATGAATGGAGAAAACACAGTGTTGCTAAAGATTATCTGTGTATCAAACTGGATAGAACATCTCTGTTAGCTTATAGCCTGCTTACAGCACCTCATACCATGAATGTAAACATATTATTTACAGTAATTTGCCAGGGATCAATTTACACAAGTATATTCAATGTTATAAAGTGCGTATAGGGttggtttcccggacacagattaaccCTAGTCCTGGATTAAATAGCATGGTCAATGGAGAGCTGTGACATCAGGATGGATGTCACATTGTCGTCTAGTGATTTCCATTGGCAAAGGTTGACCAATCCAAAGCTAGAATAATGGAAAAGGGTTACAACAATGACACTGGAACTTAGAAGACAGATGCCTGATGACCTGTATGGTCTGTCTGGAGTAATTTACAGGATAGCGTGTTTGAGTGAGTTGGACAGACAGCTCAAGGTGAATACTTTCCAAGGCAGAGAAAAAGGGATCCACTGAcataaccatagaaatagaatgactagaatggatAATCCCCTCAGACCACAGCAATTTGATAGCACCCTCATGGATACACCCAATCTGGCTCAATGAATGGGCCATGTCTGTTCTAGTGATTCTATTTATACGGACACAACACTATCCACTATGCTCTGGCACCTAACCTTGTGACACTAGAGGGCCAGGTGCCTGTGTCTTAAATCACTCTGCTGCTCCAGAGGTATGGTATGTATGAGACAGGCCATTCTataaacagaggaagagagacacatgcagacagacacaagagATGGACGTGAATGAGAGTAGTCTCTACTGATTTAAGACTAACTGACACAGGACTAAAAGTCTTTGGCTTATTACAACTTCACTTGGCAGCATCATTAGCCGAGCTCTTCGTCATTGGTATAACTGATCATCTCCCTTAGAGTAAGACCATGGAGATGAAGACCCAGGCTCAGGTGTGTGCTACTGTGCTTCAAAAGAGGGAATTTGGTGGGATCCATCTTGGctcttttttttgttattctgaaACCTTCTCTCTCCAGGAGATGCTGTTGAAGCACCAGGAATGTCTGAAGAGGCAAAGAGAAGCGGTGAAGTTCCGAATGAAGAAATTAAGCACAAAGCAAACTGAAATCACTAAAAAGTCATCAGCAATGAGGGAGAGTATAAGGAAGAAGTATGAGGACATCCAGAGGGTTCTGGATGAGGACCTGGGGATGACTCTAACCCacctggagatggaggagagagctgCAGTCACAGCCCTGGAGGACCTGATGGAGAAGAACTGCACCATCATTCAGGAGATAGAGCAGGATCTGGCCAGGCTCACAGCTGAGCTGGCCCAGAAGGACTTTCTACTGCCTTATTCACTGGACACTGAGATAGTTGGCAGAGTGATAGATCTGCTGAGCAGGACAGATCCCAGCAAAGTGAACTTGGATGAGCCTAAAGCTGACCAGATCCTCAGCCTCACCAACAACATGCTGCTACTCATACGCTCCCAGACCCCCATCACCAAGAGACTCATCAAGAGCTATTCCACAGAGGTTTCCCTGGACCCAGAGACAGCGCACCCTAAGCTGATAATTTCCCCACGCGGTGACAGTGCCACCTACACAGACACCTGGCAGGAACTACCAGAGCTCCCGGGCCGCTTTGACACCACCCTCAACGTGATCAGCCTGCAGGGTTTCAGCTCTGGGCGTCACTACTGGGAGATAGATGTGGCTGGTAAGACGTACTGGGAGCTGGGCCTCACCTACCCCACCATCTCCCGCAAGGGCAGAGCTGAGGACTGTTGGCTGGGCCGTGGCTCTGACTCCTGGGCTGTGGAGTTCTTTGATGGGGAGTACACAGCCTGGCACAGTGGGGTGCCCCACCAGCTGCCTGTCACAAAACACTTCAGCCGTATTGGGGTGCTATGTAGTTTCCCAGGGGGCCTGGTGTCTTTCCTGGGGGCGGACAGCATGACCCCTCTGTTCTCATTCTGCGCAGGGGCTTTCAGGGACTGTCTCCACCTGGCGTTGTGCTCAGGTCACGATCACAATGGTACAAACACCAAACCCATTGTGATCTGTAACGCACCTCCTAGTGCTTTCCAGAATGCCCAGGAATGCTGACTCTGCTTCTTATGATGCTCCTACTGACTCTTAAAGGCTTTATCATTGGATCATCAGCATTTAGTCAGCGATGTTATTTGACAATTTCTCATGTTGCTGCTCTTTTATCTATACAAGTACTTAAATATGCATTATGTAATCTATTAATGACTGGATTTAAGGTGCTGTTTCGAGGTAGAAGGGGAGGATCAAGATCCTTTTAAATGTATTGTGGTTCCAGTTTTAGAGAAGTCCATATCGTTCTAACCAAAGTATTAGTGGTTTTAGCtatcaaataaatatatatatatatatatatatatatatatattgctgcTCTGTaaaccagacagggccacagaAGGAAGATTTGCCGTAAAATAAACTTCATGCCCCTGGAGAGTAGCCTACACAGCTAACATGTGATGTGAATCCAAAGTCTACACTCAAACAAAAAACAATCTCTCTTTGTAAATAGGATCTCTGAGCTCTAATGGTAATATCCAATAGTAAATGACTAGTCCTATGTGCTAACTATATTTTCACAAACAATCTAGGTCAGTGTTGCCTGAATTGATGAATCACTTACTGTTAGAGTTGCAGATaatgtgtatgtttgtttattataTGTGTTTTAAGGTAAGCTCTctttaaatgaaaaaaaaaactctgaCACCTCTGACACCCCCTTAGTCAATAGAACGGTAGTGAGCGGTGAGAGACCTAGATGCCAAAGCACTCTGTGCATACAAAGGTTAGTCTTCCCACACAAATGGTTGGGAAATGATGTGGGTGATCTGACAGAATTACTCTTCTAGCCGCACACAATCACTGCCATCATGAACTCCAAGCCTCTTTTCTTCTGCCTCTTCCTTGTATTGCTAATTCTACCTGTTCAAGTAGG
>XM_021605982.2
aggctCATAGAAGGCCTATAGTTTTGAAGTATGGTATGAATCAAAGTATGAATGGAGAAAACACAGTGTTGCTAAAGATTATCTGTGTATCAAACTGGATAGAACATCTCTGTTAGCTTATAGCCTGCTTACAGCACCTCATACCATGAATGTAAACATATTATTTACAGTAATTTGCCAGGGATCAATTTACACAAGTATATTCAATGTTATAAAGTGCGTATAGGGttggtttcccggacacagattaaccCTAGTCCTGGATTAAATAGCATGGTCAATGGAGAGCTGTGACATCAGGATGGATGTCACATTGTCGTCTAGTGATTTCCATTGGCAAAGGTTGACCAATCCAAAGCTAGAATAATGGAAAAGGGTTACAACAATGACACTGGAACTTAGAAGACAGATGCCTGATGACCTGTATGGTCTGTCTGGAGTAATTTACAGGATAGCGTGTTTGAGTGAGTTGGACAGACAGCTCAAGGTGAATACTTTCCAAGGCAGAGAAAAAGGGATCCACTGAcataaccatagaaatagaatgactagaatggatAATCCCCTCAGACCACAGCAATTTGATAGCACCCTCATGGATACACCCAATCTGGCTCAATGAATGGGCCATGTCTGTTCTAGTGATTCTATTTATACGGACACAACACTATCCACTATGCTCTGGCACCTAACCTTGTGACACTAGAGGGCCAGGTGCCTGTGTCTTAAATCACTCTGCTGCTCCAGAGGTATGGTATGTATGAGACAGGCCATTCTataaacagaggaagagagacacatgcagacagacacaagagATGGACGTGAATGAGAGTAGTCTCTACTGATTTAAGACTAACTGACACAGGACTAAAAGTCTTTGGCTTATTACAACTTCACTTGGCAGCATCATTAGCCGAGCTCTTCGTCATTGGTATAACTGATCATCTCCCTTAGAGTAAGACCATGGAGATGAAGACCCAGGCTCAGGAGATGCTGTTGAAGCACCAGGAATGTCTGAAGAGGCAAAGAGAAGCGGTGAAGTTCCGAATGAAGAAATTAAGCACAAAGCAAACTGAAATCACTAAAAAGTCATCAGCAATGAGGGAGAGTATAAGGAAGAAGTATGAGGACATCCAGAGGGTTCTGGATGAGGACCTGGGGATGACTCTAACCCacctggagatggaggagagagctgCAGTCACAGCCCTGGAGGACCTGATGGAGAAGAACTGCACCATCATTCAGGAGATAGAGCAGGATCTGGCCAGGCTCACAGCTGAGCTGGCCCAGAAGGACTTTCTACTGCCTTATTCACTGGACACTGAGATAGTTGGCAGAGTGATAGATCTGCTGAGCAGGACAGATCCCAGCAAAGTGAACTTGGATGAGCCTAAAGCTGACCAGATCCTCAGCCTCACCAACAACATGCTGCTACTCATACGCTCCCAGACCCCCATCACCAAGAGACTCATCAAGAGCTATTCCACAGAGGTTTCCCTGGACCCAGAGACAGCGCACCCTAAGCTGATAATTTCCCCACGCGGTGACAGTGCCACCTACACAGACACCTGGCAGGAACTACCAGAGCTCCCGGGCCGCTTTGACACCACCCTCAACGTGATCAGCCTGCAGGGTTTCAGCTCTGGGCGTCACTACTGGGAGATAGATGTGGCTGGTAAGACGTACTGGGAGCTGGGCCTCACCTACCCCACCATCTCCCGCAAGGGCAGAGCTGAGGACTGTTGGCTGGGCCGTGGCTCTGACTCCTGGGCTGTGGAGTTCTTTGATGGGGAGTACACAGCCTGGCACAGTGGGGTGCCCCACCAGCTGCCTGTCACAAAACACTTCAGCCGTATTGGGGTGCTATGTAGTTTCCCAGGGGGCCTGGTGTCTTTCCTGGGGGCGGACAGCATGACCCCTCTGTTCTCATTCTGCGCAGGGGCTTTCAGGGACTGTCTCCACCTGGCGTTGTGCTCAGGTCACGATCACAATGGTACAAACACCAAACCCATTGTGATCTGTAACGCACCTCCTAGTGCTTTCCAGAATGCCCAGGAATGCTGACTCTGCTTCTTATGATGCTCCTACTGACTCTTAAAGGCTTTATCATTGGATCATCAGCATTTAGTCAGCGATGTTATTTGACAATTTCTCATGTTGCTGCTCTTTTATCTATACAAGTACTTAAATATGCATTATGTAATCTATTAATGACTGGATTTAAGGTGCTGTTTCGAGGTAGAAGGGGAGGATCAAGATCCTTTTAAATGTATTGTGGTTCCAGTTTTAGAGAAGTCCATATCGTTCTAACCAAAGTATTAGTGGTTTTAGCtatcaaataaatatatatatatatatatatatatatatatattgctgcTCTGTaaaccagacagggccacagaAGGAAGATTTGCCGTAAAATAAACTTCATGCCCCTGGAGAGTAGCCTACACAGCTAACATGTGATGTGAATCCAAAGTCTACACTCAAACAAAAAACAATCTCTCTTTGTAAATAGGATCTCTGAGCTCTAATGGTAATATCCAATAGTAAATGACTAGTCCTATGTGCTAACTATATTTTCACAAACAATCTAGGTCAGTGTTGCCTGAATTGATGAATCACTTACTGTTAGAGTTGCAGATaatgtgtatgtttgtttattataTGTGTTTTAAGGTAAGCTCTctttaaatgaaaaaaaaaactctgaCACCTCTGACACCCCCTTAGTCAATAGAACGGTAGTGAGCGGTGAGAGACCTAGATGCCAAAGCACTCTGTGCATACAAAGGTTAGTCTTCCCACACAAATGGTTGGGAAATGATGTGGGTGATCTGACAGAATTACTCTTCTAGCCGCACACAATCACTGCCATCATGAACTCCAAGCCTCTTTTCTTCTGCCTCTTCCTTGTATTGCTAATTCTACCTGTTCAAGTAGG

Function

NR:

description
probable E3 ubiquitin-protein ligase TRIML1 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021605977.2 False 3040 mRNA 0.45 5 58599160 58613936
XM_021605982.2 True 2953 mRNA 0.45 6 58599160 58613936

Neighbor

gene id symbol gene type direction distance location
LOC110525605 LOC106576888 coding downstream 29913 58565230 ~ 58569247 (-)
LOC110532479 ate1 coding downstream 64064 58353645 ~ 58535096 (-)
LOC110525582 fgfr2 coding downstream 316355 58166565 ~ 58282805 (-)
cdh23 cdh23 coding downstream 1038736 56904609 ~ 57560442 (-)
smoc2 smoc2 coding downstream 1725776 56791621 ~ 56873384 (-)
ablim1a LOC106576884 coding upstream 218 58614154 ~ 58760541 (-)
LOC110525667 LOC106576882 coding upstream 224325 58838261 ~ 58914347 (-)
LOC110525690 LOC106576880 coding upstream 310644 58924580 ~ 59134329 (-)
LOC110525695 LOC106576879 coding upstream 530437 59144373 ~ 59199471 (-)
LOC110525737 LOC100196663 coding upstream 598644 59212580 ~ 59248510 (-)
G64988 NA non-coding downstream 12482 58585286 ~ 58586678 (-)
G64938 NA non-coding downstream 169710 58429150 ~ 58429450 (-)
G64748 NA non-coding downstream 247416 58347293 ~ 58351744 (-)
G64891 NA non-coding downstream 262080 58336727 ~ 58337080 (-)
G64886 NA non-coding downstream 269204 58329735 ~ 58329956 (-)
G65057 NA non-coding upstream 50014 58663950 ~ 58664149 (-)
G65058 NA non-coding upstream 50471 58664407 ~ 58664627 (-)
G65060 NA non-coding upstream 55598 58669534 ~ 58671224 (-)
G65072 NA non-coding upstream 74091 58688027 ~ 58688267 (-)
G65074 NA non-coding upstream 79313 58693249 ~ 58693465 (-)
G63328 NA other downstream 1200672 57397194 ~ 57398488 (-)
G63093 NA other downstream 1536312 57035667 ~ 57062848 (-)
G61978 NA other downstream 2065185 56524970 ~ 56533975 (-)
G61715 NA other downstream 2445242 56153430 ~ 56153918 (-)
G61563 NA other downstream 2765800 55832825 ~ 55833928 (-)
G65147 NA other upstream 170806 58784742 ~ 58785617 (-)
LOC110526097 LOC106576849 other upstream 1816271 60430184 ~ 60495300 (-)
G68736 NA other upstream 3068342 61682278 ~ 61686308 (-)
LOC110526417 LOC106576819 other upstream 3367795 61981652 ~ 61983330 (-)

Expression


Co-expression Network