erlin1 (LOC106576878)


Basic Information

Item Value
gene id erlin1
gene name LOC106576878
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 59284324 ~ 59299682 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021606181.2
GCTTTATAAATTCCGTGACCCGGAAGTACTTCAGTGTTGCTGACGAGGTGCTGATGGGTCGATGTCAACTGGATGAAAATACAAGATCTATCGCTTCAATACACTGgtgaGTTTGGGTGAGGATGACGATGACTCACGTGGGGGCAGTAGTTGGTGCAGTAACTGCAGTGATGGCCATCCTGCTGCACTCCTCCATTCACAAGATAGAGGAGGGGCACCTAGCTGTTTACTACAGAGGAGGAGCTTTGCTAACTGCACCCAACGGCCCTGGATACCACATTATGATGCCCTTTCTTACCACCTACAGATCAGTACAGACGACTCTTCAAACTGATGAGATAAAGAACGTGCCTTGTGGAACTAGTGGGGGAGTGATGATCTACTTTGACCGTATAGAGGTGGTCAACATGCTGGTGCCCTCATCTGtgGTGGACACAGTGAAGAACTATACAGCTGATTATGACAAAACTCTAATTTTCAACAAGATTCACCACGAACTCAACCAATTCTGCAGCGTACACACTTTACAGGAGGTCTACATCGAGCTGTTTGATATCATTGATGAGAACCTGAAAATCGCTCTGCAGAAAGACCTAAACTCTATGGCGCCTGGACTAAcgatacagGCTGTCCGAGTCACCAAGCCCAAAATCCCAGAGGCCATCAGGAGAAACTTTGAGCTCATggagggggagaagactCGTCTGTTGGTAACGGTTCAGACTCAGAAGGTTGTGGAGAAAGAAGCTGAGACTGAGAGGAAGAAAGCCGTCATCGAGGCTCAGAAGGTGGCTGAAGTAGCACAGATTCATTTCCAACAGAAGGTGATGGAGAAAGAGACTGAGAAGAGGATCTCTGaaatagaggACACTGCGTTCTTGGCAAAAATGAAGGCCAGGGCTGATGCAGAGTATTATACAGCCGCTAAGTTTGCTGAAGCTAACAGGTTGAAGTTAACACCCGAGTACCTTGAGTTGATGAAGTACCAGGCGATAGCAGCCAACAGTAAGATCTACTTCGGCCAGGACATCCCTAACATGTTTGTTGAGGGACACAGCCCTACCCAGGACCCTGAGCCCCCGAAAGCCTCTGAACAGGCCAGACACTAAGATCCGagactagctgtctgtctgtctgtcagttgaAGGGTTTGAGGGACAAAGGGAGTTTGAGGAGTCATTCCCCTAATTGGGGTGCGTAAAGGCTTTAGTTTTAATTCTAtcggccagagagagagagggagggagaagggggattGGTAAAgaaggatggggagaggaaggagtgagCGAGAAGCATGGAAAGAGAAATTCAGAAAAAAgtgaggggggggtgggggtcgcagggagagagcgagcgggTCTGTCTACACCTGTGTTGAGCAGGCAGTCGGTGGGAAGGATCAGTAAGAGGCATTAATGCTGATATTTGGCCTGGGTTGAGTGTTAGGCAGGTGGCTCTCAGTCGCCCTGCTCTACATGTGCAGCTTTGCATCGGATGCAACTCTTGGCTTTGTTTTTTGGAATTGtataatttttgttgttgtttgatgctTTATGCAAAATAATGAATTTAAATTGAACTTGAACATTAAGTTCAGCCTTACTGTCTAATTTGTTTTTAGCTTAACTAGAATGTAAAGAAGGCAACACTAATTCTGAACTAAAGGGTTTCtggttctgattctaaatggagTTTGGTGTATTGGTACTCCGGTCTCTTTCTAGTCATCCACAGTTTGTGTGTTTGCACGTGTGAGAGAGCAagaaaggggtgtgtgtgtgtgtgtgtgtgtgagactaagGGAGAGCGAAAGGAAACGAGAAATTGTGTGTGAGCCCATACTCCATTCTTACCCCAGAGCAGATCTGAGCCAGGACAATGAGACACTACAAACCTTCAGTCTGTCTGTCGGCACACATGGGTTGGACTTCTCGTAAGCGCAGAAACACCCAGTGGAACTCCTTAGAACTCTTCTTAGAACCTATGTATGGGGGGGGGGACTGATTAAAAATAGTTTTTCTGTAGAGGGCTGCGAGAGGACTGGCTTGTATTGCCATTCTAAGCTAAAGGGCTTCTGGGTAGTGTAGTCTTGGTGTGTATTTTCAGTCGGGAATCTAGTGTCAGTGGAATAGTTGTAGTTAAATGGGTTGATTCTCTGTTTGAGGCTGAGGTTAAAcaaatgatctaggatcagttaaaCTGGCTGGCAGAAGGACACTGAAGTCAGACTTGCCCTTTATTTTCTTTCTGTTTACTGTGAAACACCTCCAGTAGAgaatacaggactactaatacAAGGGCTGTTGACGGTTTGCCTGGAACCACTACACTGTATGTCAGCCATGTGTGGCTATTGAATGCAAAACCAGACAAACCGGCTCCGACTACATTGACACAGGTAGAGCGGAAGGCCGATGCTTTTCTTGCGCCATCGTTCCGTTCAAACTGAGCTGGCTCTAATATTTTATTCTCACATGGTCCATTTCAAAGTTTTCAGCATAATTCCAGGCCAACAACTATGGttgtgtaaccaggccagctcagtacatctTGATTTTACTTCACTCAGTTCAGCTCAGTAGTTTTTAGTTTGTATTTAGTAGGTAGAGAGGTAGCGTTAGTGTTAACTCTCAGGAAAGAGCTTGAGGCGACTAGTGACTTGGGCAGACAGCGTCATactgtattttttatatatatatatatatgtacacgtGTATATCTCATATACGTGTATATCTATATGGCTTGTATATCCCTATATGGTTCTTTATACAGAATGGCTGTAGTGCCACCTTCAGGCTCAGAAATTACAGGCGTAGGAATTGACAGGCTTACAGAGATAGACTTCGGTTCAGTAAAGCTACTCGGGCACTTCAGTAGATTAACCACCACTAACAGGGAAACTACTCTGGAGGAGTGTAACACAGTGGGTTCACAGAGTTAGCCAGCGAACTTTGAGAAACGCTCAGATGTAGGCTAGCTCTTGAATTTCCGGTTTGTTAAGAAAGAAACTCTATCAGTCGTTTGGAATGTTGAGTGAGTCAGTTACTGTGCCAATTTCAAGTGTATATAAACTTGAACATATGAATCCAGAATATTTAGGAAAGTTAGCTGGCGAACTCCTTCAATCCTGCCCTGTGACGTCACGCTACCGTGCTGCTGTTTACTGTACTTGATCTCACCAATCGTCTTTCTCCTATGGCATTGGTGGTGGGTTTAAATTAGAAAATGCAGAAAAGGATGGAATTAAATTTGTCATGGAAATAATTAACACGTTTTTGTGAATGTTACTTTTGTACAATTTTCATAATTTGAACTGTCTTATTTTAAAAGATTTATATGCAACAAAAAGTTCAAGTTTTGACAATGTTCGAATATGTAAAATAAAACCTATTTTGATACcacaa
>XM_021606193.2
cctcatggcttgatttttgcaactgtgggaccttatgcagacaggtgaGTTTGGGTGAGGATGACGATGACTCACGTGGGGGCAGTAGTTGGTGCAGTAACTGCAGTGATGGCCATCCTGCTGCACTCCTCCATTCACAAGATAGAGGAGGGGCACCTAGCTGTTTACTACAGAGGAGGAGCTTTGCTAACTGCACCCAACGGCCCTGGATACCACATTATGATGCCCTTTCTTACCACCTACAGATCAGTACAGACGACTCTTCAAACTGATGAGATAAAGAACGTGCCTTGTGGAACTAGTGGGGGAGTGATGATCTACTTTGACCGTATAGAGGTGGTCAACATGCTGGTGCCCTCATCTGtgGTGGACACAGTGAAGAACTATACAGCTGATTATGACAAAACTCTAATTTTCAACAAGATTCACCACGAACTCAACCAATTCTGCAGCGTACACACTTTACAGGAGGTCTACATCGAGCTGTTTGATATCATTGATGAGAACCTGAAAATCGCTCTGCAGAAAGACCTAAACTCTATGGCGCCTGGACTAAcgatacagGCTGTCCGAGTCACCAAGCCCAAAATCCCAGAGGCCATCAGGAGAAACTTTGAGCTCATggagggggagaagactCGTCTGTTGGTAACGGTTCAGACTCAGAAGGTTGTGGAGAAAGAAGCTGAGACTGAGAGGAAGAAAGCCGTCATCGAGGCTCAGAAGGTGGCTGAAGTAGCACAGATTCATTTCCAACAGAAGGTGATGGAGAAAGAGACTGAGAAGAGGATCTCTGaaatagaggACACTGCGTTCTTGGCAAAAATGAAGGCCAGGGCTGATGCAGAGTATTATACAGCCGCTAAGTTTGCTGAAGCTAACAGGTTGAAGTTAACACCCGAGTACCTTGAGTTGATGAAGTACCAGGCGATAGCAGCCAACAGTAAGATCTACTTCGGCCAGGACATCCCTAACATGTTTGTTGAGGGACACAGCCCTACCCAGGACCCTGAGCCCCCGAAAGCCTCTGAACAGGCCAGACACTAAGATCCGagactagctgtctgtctgtctgtcagttgaAGGGTTTGAGGGACAAAGGGAGTTTGAGGAGTCATTCCCCTAATTGGGGTGCGTAAAGGCTTTAGTTTTAATTCTAtcggccagagagagagagggagggagaagggggattGGTAAAgaaggatggggagaggaaggagtgagCGAGAAGCATGGAAAGAGAAATTCAGAAAAAAgtgaggggggggtgggggtcgcagggagagagcgagcgggTCTGTCTACACCTGTGTTGAGCAGGCAGTCGGTGGGAAGGATCAGTAAGAGGCATTAATGCTGATATTTGGCCTGGGTTGAGTGTTAGGCAGGTGGCTCTCAGTCGCCCTGCTCTACATGTGCAGCTTTGCATCGGATGCAACTCTTGGCTTTGTTTTTTGGAATTGtataatttttgttgttgtttgatgctTTATGCAAAATAATGAATTTAAATTGAACTTGAACATTAAGTTCAGCCTTACTGTCTAATTTGTTTTTAGCTTAACTAGAATGTAAAGAAGGCAACACTAATTCTGAACTAAAGGGTTTCtggttctgattctaaatggagTTTGGTGTATTGGTACTCCGGTCTCTTTCTAGTCATCCACAGTTTGTGTGTTTGCACGTGTGAGAGAGCAagaaaggggtgtgtgtgtgtgtgtgtgtgtgagactaagGGAGAGCGAAAGGAAACGAGAAATTGTGTGTGAGCCCATACTCCATTCTTACCCCAGAGCAGATCTGAGCCAGGACAATGAGACACTACAAACCTTCAGTCTGTCTGTCGGCACACATGGGTTGGACTTCTCGTAAGCGCAGAAACACCCAGTGGAACTCCTTAGAACTCTTCTTAGAACCTATGTATGGGGGGGGGGACTGATTAAAAATAGTTTTTCTGTAGAGGGCTGCGAGAGGACTGGCTTGTATTGCCATTCTAAGCTAAAGGGCTTCTGGGTAGTGTAGTCTTGGTGTGTATTTTCAGTCGGGAATCTAGTGTCAGTGGAATAGTTGTAGTTAAATGGGTTGATTCTCTGTTTGAGGCTGAGGTTAAAcaaatgatctaggatcagttaaaCTGGCTGGCAGAAGGACACTGAAGTCAGACTTGCCCTTTATTTTCTTTCTGTTTACTGTGAAACACCTCCAGTAGAgaatacaggactactaatacAAGGGCTGTTGACGGTTTGCCTGGAACCACTACACTGTATGTCAGCCATGTGTGGCTATTGAATGCAAAACCAGACAAACCGGCTCCGACTACATTGACACAGGTAGAGCGGAAGGCCGATGCTTTTCTTGCGCCATCGTTCCGTTCAAACTGAGCTGGCTCTAATATTTTATTCTCACATGGTCCATTTCAAAGTTTTCAGCATAATTCCAGGCCAACAACTATGGttgtgtaaccaggccagctcagtacatctTGATTTTACTTCACTCAGTTCAGCTCAGTAGTTTTTAGTTTGTATTTAGTAGGTAGAGAGGTAGCGTTAGTGTTAACTCTCAGGAAAGAGCTTGAGGCGACTAGTGACTTGGGCAGACAGCGTCATactgtattttttatatatatatatatatgtacacgtGTATATCTCATATACGTGTATATCTATATGGCTTGTATATCCCTATATGGTTCTTTATACAGAATGGCTGTAGTGCCACCTTCAGGCTCAGAAATTACAGGCGTAGGAATTGACAGGCTTACAGAGATAGACTTCGGTTCAGTAAAGCTACTCGGGCACTTCAGTAGATTAACCACCACTAACAGGGAAACTACTCTGGAGGAGTGTAACACAGTGGGTTCACAGAGTTAGCCAGCGAACTTTGAGAAACGCTCAGATGTAGGCTAGCTCTTGAATTTCCGGTTTGTTAAGAAAGAAACTCTATCAGTCGTTTGGAATGTTGAGTGAGTCAGTTACTGTGCCAATTTCAAGTGTATATAAACTTGAACATATGAATCCAGAATATTTAGGAAAGTTAGCTGGCGAACTCCTTCAATCCTGCCCTGTGACGTCACGCTACCGTGCTGCTGTTTACTGTACTTGATCTCACCAATCGTCTTTCTCCTATGGCATTGGTGGTGGGTTTAAATTAGAAAATGCAGAAAAGGATGGAATTAAATTTGTCATGGAAATAATTAACACGTTTTTGTGAATGTTACTTTTGTACAATTTTCATAATTTGAACTGTCTTATTTTAAAAGATTTATATGCAACAAAAAGTTCAAGTTTTGACAATGTTCGAATATGTAAAATAAAACCTATTTTGATACcacaa

Function

NR:

description
PREDICTED: erlin-1

GO:

id name namespace
GO:0005789 endoplasmic reticulum membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K23341 ERLIN; erlin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021606181.2 False 3410 mRNA 0.44 12 59284324 59299682
XM_021606193.2 True 3348 mRNA 0.44 12 59287855 59299682

Neighbor

gene id symbol gene type direction distance location
LOC110525756 NA coding upstream 72149 59210006 ~ 59212175 (+)
trnaa-ugc NA coding upstream 222444 59061807 ~ 59061880 (+)
fam160b1 fam160b1 coding upstream 446125 58808370 ~ 58838199 (+)
LOC110525578 NA coding upstream 1320501 57961716 ~ 57963823 (+)
wdr11 wdr11 coding upstream 1346336 57806134 ~ 57940604 (+)
si:ch211-217g15.3 LOC106576876 coding downstream 40857 59340539 ~ 59342276 (+)
cxcf1a cxcf1a coding downstream 183799 59483481 ~ 59485882 (+)
cxcl12a cxcl12a coding downstream 289982 59589595 ~ 59631391 (+)
LOC110525860 NA coding downstream 300223 59599905 ~ 59608419 (+)
ercc6 ercc6 coding downstream 425936 59725618 ~ 59778737 (+)
G64718 NA non-coding upstream 4011 59275245 ~ 59280313 (+)
G64716 NA non-coding upstream 11833 59272211 ~ 59272491 (+)
G64645 LOC100196663 non-coding upstream 49759 59212441 ~ 59234565 (+)
G64577 NA non-coding upstream 236065 59047544 ~ 59048259 (+)
G64440 NA non-coding upstream 422318 58858828 ~ 58862006 (+)
G65432 NA non-coding downstream 5084 59304766 ~ 59304983 (+)
G65441 NA non-coding downstream 21122 59320804 ~ 59321015 (+)
G65446 NA non-coding downstream 27974 59327656 ~ 59327869 (+)
G65448 NA non-coding downstream 31419 59331101 ~ 59331325 (+)
G65456 NA non-coding downstream 48673 59348355 ~ 59348657 (+)
G64338 NA other upstream 583945 58699296 ~ 58700379 (+)
G64315 NA other upstream 618418 58665334 ~ 58665906 (+)
G64292 NA other upstream 696739 58586858 ~ 58587585 (+)
G63959 fgfr2 other upstream 1061194 58221522 ~ 58223130 (+)
G63958 NA other upstream 1116146 58166565 ~ 58168178 (+)
G65442 NA other downstream 24954 59324636 ~ 59325129 (+)
G66188 NA other downstream 641804 59941486 ~ 59942064 (+)
G67806 LOC106581772 other downstream 2015192 61314874 ~ 61315252 (+)
G67930 mcmbp other downstream 2430083 61729765 ~ 61733388 (+)
G70011 NA other downstream 3975281 63274963 ~ 63275296 (+)

Expression


Co-expression Network