spef1 (spef1)


Basic Information

Item Value
gene id spef1
gene name spef1
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 59310306 ~ 59318124 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036980996.1
CAATATATGCACCCTTTGGGGTTCTGAGGACAGAGGGAAACCCTGGCCTAGGGGCTAACTTAGTTTCATTGAGCACTGTCCTGTGGTTGTCAACTAAGAAAAGTTAGTCCAGACAGAAACATGTCATAGCAGTGTTGTTTATATCGGCCCTTGTTCCAGTGATGGCTGCTGAGGTCGTCAAGTATTTCTTTCCCAAACTGGTGGAGCTTCACAACTACACCCCAGCCAACTCTATACAGCAAAAACTCAGCAACTGGGGCACTCTCAACAGgcaagtgtCGTGTTTCCATGTTGACAGGAAGGTGTTCTCCAAGCTGAACTTCCACATCCCAGAGGAGACCGTGAAGAGGATAGTGGTGAGCACTGCTGGAGTAATAGAGCCTGTCCTGTGTTCGCTCCGAGAAAGGATTGACGACAAGAGACAGCAATGCACTGAAGACAcactactgGATGTGGAATACTACAACAACAGAAACCGAGAGAAACCTCTCACAGAGCCACCTCCcaagaagaaagaggagagggcacacgtacaccaacacacagacaAGACTAGcactgtGCTAGGTTCTCAGGTGGACCCAACCATCCGTCTTGTGCTGGAGGAGAAGGAGCAAGCTCTACTTGCCCTACAGGAGACTgtggagatcctgCAGATCAAGGTGAACAGACTGGAACACTTGGTTCAGCTAAAGGACATGAGACTTGAAGACCTGACACGCCATCTGGAGAGATACAAGGCCAGGGCTAACGTGCCTTGATACACACCGAAGCGGACACACTCAGAAACACACAGCAACTCTCAGACACAACTAGAAACAACAAACACACCTCTCCTTTTTATGAACTACATTTTTCTAACAActaatgcttgttttgctatcaGCCTGTACTTTTCTAAAAGTTAGCACTGAATGTTTTGTGAAGTATTTTTTAATTTGTTGCATTTATTAAATCATAACAGATGATATTGtattgagaatgtgtgtgtgttttctatatatAATGTGCTAGATTGAGGGGACTACTAGACTATAAGGTTTGTAGTGTGGATCTTATGTGTGTCTATTGCTGTGCCCTTATAACAGCCATGTGACCACTAACCTCTGAAGCTGTCTAAATAAAACACTGACACTAAA
>XM_036981009.1
ctggggcaAAAAAAACAATATATGCACCCTTTGGGGTTCTGAGGACAGAGGGAAACCCTGGCCTAGGGGCTAACTTAGTGATGGCTGCTGAGGTCGTCAAGTATTTCTTTCCCAAACTGGTGGAGCTTCACAACTACACCCCAGCCAACTCTATACAGCAAAAACTCAGCAACTGGGGCACTCTCAACAGGAAGGTGTTCTCCAAGCTGAACTTCCACATCCCAGAGGAGACCGTGAAGAGGATAGTGGTGAGCACTGCTGGAGTAATAGAGCCTGTCCTGTGTTCGCTCCGAGAAAGGATTGACGACAAGAGACAGCAATGCACTGAAGACAcactactgGATGTGGAATACTACAACAACAGAAACCGAGAGAAACCTCTCACAGAGCCACCTCCcaagaagaaagaggagagggcacacgtacaccaacacacagacaAGACTAGcactgtGCTAGGTTCTCAGGTGGACCCAACCATCCGTCTTGTGCTGGAGGAGAAGGAGCAAGCTCTACTTGCCCTACAGGAGACTgtggagatcctgCAGATCAAGGTGAACAGACTGGAACACTTGGTTCAGCTAAAGGACATGAGACTTGAAGACCTGACACGCCATCTGGAGAGATACAAGGCCAGGGCTAACGTGCCTTGATACACACCGAAGCGGACACACTCAGAAACACACAGCAACTCTCAGACACAACTAGAAACAACAAACACACCTCTCCTTTTTATGAACTACATTTTTCTAACAActaatgcttgttttgctatcaGCCTGTACTTTTCTAAAAGTTAGCACTGAATGTTTTGTGAAGTATTTTTTAATTTGTTGCATTTATTAAATCATAACAGATGATATTGtattgagaatgtgtgtgtgttttctatatatAATGTGCTAGATTGAGGGGACTACTAGACTATAAGGTTTGTAGTGTGGATCTTATGTGTGTCTATTGCTGTGCCCTTATAACAGCCATGTGACCACTAACCTCTGAAGCTGTCTAAATAAAACACTGACACTAAA
>XM_036981000.1
agtgctggggcaAAAAAAACAATATATGCACCCTTTGGGGTTCTGAGGACAGAGGGAAACCCTGGCCTAGGGGCTAACTTAGTGATGGCTGCTGAGGTCGTCAAGTATTTCTTTCCCAAACTGGTGGAGCTTCACAACTACACCCCAGCCAACTCTATACAGCAAAAACTCAGCAACTGGGGCACTCTCAACAGgcaagtgtCGTGTTTCCATGTTGACAGGAAGGTGTTCTCCAAGCTGAACTTCCACATCCCAGAGGAGACCGTGAAGAGGATAGTGGTGAGCACTGCTGGAGTAATAGAGCCTGTCCTGTGTTCGCTCCGAGAAAGGATTGACGACAAGAGACAGCAATGCACTGAAGACAcactactgGATGTGGAATACTACAACAACAGAAACCGAGAGAAACCTCTCACAGAGCCACCTCCcaagaagaaagaggagagggcacacgtacaccaacacacagacaAGACTAGcactgtGCTAGGTTCTCAGGTGGACCCAACCATCCGTCTTGTGCTGGAGGAGAAGGAGCAAGCTCTACTTGCCCTACAGGAGACTgtggagatcctgCAGATCAAGGTGAACAGACTGGAACACTTGGTTCAGCTAAAGGACATGAGACTTGAAGACCTGACACGCCATCTGGAGAGATACAAGGCCAGGGCTAACGTGCCTTGATACACACCGAAGCGGACACACTCAGAAACACACAGCAACTCTCAGACACAACTAGAAACAACAAACACACCTCTCCTTTTTATGAACTACATTTTTCTAACAActaatgcttgttttgctatcaGCCTGTACTTTTCTAAAAGTTAGCACTGAATGTTTTGTGAAGTATTTTTTAATTTGTTGCATTTATTAAATCATAACAGATGATATTGtattgagaatgtgtgtgtgttttctatatatAATGTGCTAGATTGAGGGGACTACTAGACTATAAGGTTTGTAGTGTGGATCTTATGTGTGTCTATTGCTGTGCCCTTATAACAGCCATGTGACCACTAACCTCTGAAGCTGTCTAAATAAAACACTGACACTAAA
>XM_021606204.2
gtagaaatgggcGGGGTTTGGACTTTGTGGCTATGGTAACTAATGACGACCATCGTGggacgctagctagctaacgatacAGGCTAGCTGCAAATCGAAGTGTAAAGTTGTCGGATGAAGGACCGGTATACAGAATGGACAAAGAATTAAACGAAGAAATATTGCAAGACTTGTTTGCCTGGATAGACAAAATACCACTGTCCAGACCTAAGAGGAATATAACAAGAGACTTCAGCGACGGAGTGATGGCTGCTGAGGTCGTCAAGTATTTCTTTCCCAAACTGGTGGAGCTTCACAACTACACCCCAGCCAACTCTATACAGCAAAAACTCAGCAACTGGGGCACTCTCAACAGGAAGGTGTTCTCCAAGCTGAACTTCCACATCCCAGAGGAGACCGTGAAGAGGATAGTGGTGAGCACTGCTGGAGTAATAGAGCCTGTCCTGTGTTCGCTCCGAGAAAGGATTGACGACAAGAGACAGCAATGCACTGAAGACAcactactgGATGTGGAATACTACAACAACAGAAACCGAGAGAAACCTCTCACAGAGCCACCTCCcaagaagaaagaggagagggcacacgtacaccaacacacagacaAGACTAGcactgtGCTAGGTTCTCAGGTGGACCCAACCATCCGTCTTGTGCTGGAGGAGAAGGAGCAAGCTCTACTTGCCCTACAGGAGACTgtggagatcctgCAGATCAAGGTGAACAGACTGGAACACTTGGTTCAGCTAAAGGACATGAGACTTGAAGACCTGACACGCCATCTGGAGAGATACAAGGCCAGGGCTAACGTGCCTTGATACACACCGAAGCGGACACACTCAGAAACACACAGCAACTCTCAGACACAACTAGAAACAACAAACACACCTCTCCTTTTTATGAACTACATTTTTCTAACAActaatgcttgttttgctatcaGCCTGTACTTTTCTAAAAGTTAGCACTGAATGTTTTGTGAAGTATTTTTTAATTTGTTGCATTTATTAAATCATAACAGATGATATTGtattgagaatgtgtgtgtgttttctatatatAATGTGCTAGATTGAGGGGACTACTAGACTATAAGGTTTGTAGTGTGGATCTTATGTGTGTCTATTGCTGTGCCCTTATAACAGCCATGTGACCACTAACCTCTGAAGCTGTCTAAATAAAACACTGACACTAAA
>XM_036980984.1
gtagaaatgggcGGGGTTTGGACTTTGTGGCTATGGTAACTAATGACGACCATCGTGggacgctagctagctaacgatacAGGCTAGCTGCAAATCGAAGTGTAAAGTTGTCGGATGAAGGACCGGTATACAGAATGGACAAAGAATTAAACGAAGAAATATTGCAAGACTTGTTTGCCTGGATAGACAAAATACCACTGTCCAGACCTAAGAGGAATATAACAAGAGACTTCAGCGACGGAGTGATGGCTGCTGAGGTCGTCAAGTATTTCTTTCCCAAACTGGTGGAGCTTCACAACTACACCCCAGCCAACTCTATACAGCAAAAACTCAGCAACTGGGGCACTCTCAACAGgcaagtgtCGTGTTTCCATGTTGACAGGAAGGTGTTCTCCAAGCTGAACTTCCACATCCCAGAGGAGACCGTGAAGAGGATAGTGGTGAGCACTGCTGGAGTAATAGAGCCTGTCCTGTGTTCGCTCCGAGAAAGGATTGACGACAAGAGACAGCAATGCACTGAAGACAcactactgGATGTGGAATACTACAACAACAGAAACCGAGAGAAACCTCTCACAGAGCCACCTCCcaagaagaaagaggagagggcacacgtacaccaacacacagacaAGACTAGcactgtGCTAGGTTCTCAGGTGGACCCAACCATCCGTCTTGTGCTGGAGGAGAAGGAGCAAGCTCTACTTGCCCTACAGGAGACTgtggagatcctgCAGATCAAGGTGAACAGACTGGAACACTTGGTTCAGCTAAAGGACATGAGACTTGAAGACCTGACACGCCATCTGGAGAGATACAAGGCCAGGGCTAACGTGCCTTGATACACACCGAAGCGGACACACTCAGAAACACACAGCAACTCTCAGACACAACTAGAAACAACAAACACACCTCTCCTTTTTATGAACTACATTTTTCTAACAActaatgcttgttttgctatcaGCCTGTACTTTTCTAAAAGTTAGCACTGAATGTTTTGTGAAGTATTTTTTAATTTGTTGCATTTATTAAATCATAACAGATGATATTGtattgagaatgtgtgtgtgttttctatatatAATGTGCTAGATTGAGGGGACTACTAGACTATAAGGTTTGTAGTGTGGATCTTATGTGTGTCTATTGCTGTGCCCTTATAACAGCCATGTGACCACTAACCTCTGAAGCTGTCTAAATAAAACACTGACACTAAA
>XM_036980995.1
gtagaaatgggcGGGGTTTGGACTTTGTGGCTATGGTAACTAATGACGACCATCGTGggacgctagctagctaacgatacAGGCTAGCTGCAAATCGAAGTGTAAAGTTGTCGGATGAAGGACCGGTATACAGAATGGACAAAGAATTAAACGAAGAAATATTGCAAGACTTGTTTGCCTGGATAGACAAAATACCACTGTCCAGACCTAAGAGGAATATAACAAGAGACTTCAGCGACGGAGTGATGGCTGCTGAGGTCGTCAAGTATTTCTTTCCCAAACTGGTGGAGCTTCACAACTACACCCCAGCCAACTCTATACAGCAAAAACTCAGCAACTGGGGCACTCTCAACAGgcaagtgtCGTGTTTCCATGTTGACAGGAAGGTGTTCTCCAAGCTGAACTTCCACATCCCAGAGGAGACCGTGAAGAGGATAGTGGATGTGGAATACTACAACAACAGAAACCGAGAGAAACCTCTCACAGAGCCACCTCCcaagaagaaagaggagagggcacacgtacaccaacacacagacaAGACTAGcactgtGCTAGGTTCTCAGGTGGACCCAACCATCCGTCTTGTGCTGGAGGAGAAGGAGCAAGCTCTACTTGCCCTACAGGAGACTgtggagatcctgCAGATCAAGGTGAACAGACTGGAACACTTGGTTCAGCTAAAGGACATGAGACTTGAAGACCTGACACGCCATCTGGAGAGATACAAGGCCAGGGCTAACGTGCCTTGATACACACCGAAGCGGACACACTCAGAAACACACAGCAACTCTCAGACACAACTAGAAACAACAAACACACCTCTCCTTTTTATGAACTACATTTTTCTAACAActaatgcttgttttgctatcaGCCTGTACTTTTCTAAAAGTTAGCACTGAATGTTTTGTGAAGTATTTTTTAATTTGTTGCATTTATTAAATCATAACAGATGATATTGtattgagaatgtgtgtgtgttttctatatatAATGTGCTAGATTGAGGGGACTACTAGACTATAAGGTTTGTAGTGTGGATCTTATGTGTGTCTATTGCTGTGCCCTTATAACAGCCATGTGACCACTAACCTCTGAAGCTGTCTAAATAAAACACTGACACTAAA
>XM_036981003.1
gtagaaatgggcGGGGTTTGGACTTTGTGGCTATGGTAACTAATGACGACCATCGTGggacgctagctagctaacgatacAGGCTAGCTGCAAATCGAAGTGTAAAGTTGTCGGATGAAGGACCGGTATACAGAATGGACAAAGAATTAAACGAAGAAATATTGCAAGACTTGTTTGCCTGGATAGACAAAATACCACTGTCCAGACCTAAGAGGAATATAACAAGAGACTTCAGCGACGGAGTGATGGCTGCTGAGGTCGTCAAGTATTTCTTTCCCAAACTGGTGGAGCTTCACAACTACACCCCAGCCAACTCTATACAGCAAAAACTCAGCAACTGGGGCACTCTCAACAGGAAGGTGTTCTCCAAGCTGAACTTCCACATCCCAGAGGAGACCGTGAAGAGGATAGTGGATGTGGAATACTACAACAACAGAAACCGAGAGAAACCTCTCACAGAGCCACCTCCcaagaagaaagaggagagggcacacgtacaccaacacacagacaAGACTAGcactgtGCTAGGTTCTCAGGTGGACCCAACCATCCGTCTTGTGCTGGAGGAGAAGGAGCAAGCTCTACTTGCCCTACAGGAGACTgtggagatcctgCAGATCAAGGTGAACAGACTGGAACACTTGGTTCAGCTAAAGGACATGAGACTTGAAGACCTGACACGCCATCTGGAGAGATACAAGGCCAGGGCTAACGTGCCTTGATACACACCGAAGCGGACACACTCAGAAACACACAGCAACTCTCAGACACAACTAGAAACAACAAACACACCTCTCCTTTTTATGAACTACATTTTTCTAACAActaatgcttgttttgctatcaGCCTGTACTTTTCTAAAAGTTAGCACTGAATGTTTTGTGAAGTATTTTTTAATTTGTTGCATTTATTAAATCATAACAGATGATATTGtattgagaatgtgtgtgtgttttctatatatAATGTGCTAGATTGAGGGGACTACTAGACTATAAGGTTTGTAGTGTGGATCTTATGTGTGTCTATTGCTGTGCCCTTATAACAGCCATGTGACCACTAACCTCTGAAGCTGTCTAAATAAAACACTGACACTAAA
>TU72826
TGTTGACAGGAAGGTGTTCTCCAAGCTGAACTTCCACATCCCAGAGGAGACCGTGAAGAGGATAGTGGTGAGCACTGCTGGAGTAATAGAGCCTGTCCTGTGTTCGCTCCGAGAAAGGATTGACGACAAGAGACAGCAATGCACTGAAGACAcactactgGATGTGGAATACTACAACAACAGAAACCGAGAGAAACCTCTCACAGAGCCACCTCCcaagaagaaagaggagagggcacacgtacaccaacacacagacaAGACTAGcactgtGCTAGGTTCTCAGGTGGACCCAACCATCCGTCTTGTGCTGGAGGAGAAGGAGCAAGCTCTACTTGCCCTACAGGAGACTgtggagatcctgCAGATCAAGGTGAACAGACTGGAACACTTGGTTCAGCTAAAGGACATGAGACTTGAAGACCTGACACGCCATCTGGAGAGATACAAGGCCAGGGCTAACGTGCCTTGATACACACCGAAGCGGACACACTCAGAAACACACAGCAACTCTCAGACACAACTAGAAACAACAAACACACCTCTCCTTTTTATGAACTACATTTTTCTAACAActaatgcttgttttgctat

Function

symbol description
spef1 Predicted to enable microtubule binding activity. Predicted to be involved in regulation of cytoskeleton organization. Predicted to be active in axoneme.

NR:

description
sperm flagellar protein 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036980996.1 False 1139 mRNA 0.45 7 59310306 59314571
XM_036981009.1 False 1031 mRNA 0.45 7 59310306 59314586
XM_036981000.1 False 1062 mRNA 0.45 7 59310306 59314590
XM_021606204.2 False 1196 mRNA 0.45 7 59310306 59318124
XM_036980984.1 False 1223 mRNA 0.45 7 59310306 59318124
XM_036980995.1 False 1130 mRNA 0.44 7 59310306 59318124
XM_036981003.1 False 1103 mRNA 0.44 7 59310306 59318124
TU72826 True 594 lncRNA 0.54 5 59310562 59312366

Neighbor

gene id symbol gene type direction distance location
LOC110525737 LOC100196663 coding downstream 61796 59212580 ~ 59248510 (-)
LOC110525695 LOC106576879 coding downstream 110835 59144373 ~ 59199471 (-)
LOC110525690 LOC106576880 coding downstream 175977 58924580 ~ 59134329 (-)
LOC110525667 LOC106576882 coding downstream 395959 58838261 ~ 58914347 (-)
ablim1a LOC106576884 coding downstream 549765 58614154 ~ 58760541 (-)
fuom fuom coding upstream 24198 59342322 ~ 59348237 (-)
echs1 echs1 coding upstream 31432 59349556 ~ 59368121 (-)
mtg1 mtg1 coding upstream 61688 59379812 ~ 59398680 (-)
si:dkey-275b16.2 paox coding upstream 88020 59406144 ~ 59422417 (-)
rassf4a rassf4 coding upstream 120461 59438585 ~ 59507068 (-)
G65433 NA non-coding downstream 5129 59304846 ~ 59305177 (-)
G65420 NA non-coding downstream 27709 59282324 ~ 59282597 (-)
G65419 NA non-coding downstream 28117 59281990 ~ 59282189 (-)
G65373 NA non-coding downstream 41922 59179972 ~ 59268384 (-)
G65397 NA non-coding downstream 81566 59227958 ~ 59228740 (-)
G65743 NA non-coding upstream 1925 59320049 ~ 59320271 (-)
G65744 NA non-coding upstream 6512 59324636 ~ 59325294 (-)
G65745 NA non-coding upstream 7726 59325850 ~ 59326050 (-)
G65746 NA non-coding upstream 9024 59327148 ~ 59327476 (-)
G65747 NA non-coding upstream 9871 59327995 ~ 59328273 (-)
G65147 NA other downstream 524689 58784742 ~ 58785617 (-)
G63328 NA other downstream 1911818 57397194 ~ 57398488 (-)
G63093 NA other downstream 2247458 57035667 ~ 57062848 (-)
G61978 NA other downstream 2776331 56524970 ~ 56533975 (-)
LOC110526097 LOC106576849 other upstream 1112083 60430184 ~ 60495300 (-)
G68736 NA other upstream 2364154 61682278 ~ 61686308 (-)
LOC110526417 LOC106576819 other upstream 2663607 61981652 ~ 61983330 (-)
G69210 NA other upstream 3093398 62411522 ~ 62418296 (-)
G70013 NA other upstream 3959084 63277208 ~ 63277752 (-)

Expression


Co-expression Network