echs1 (echs1)


Basic Information

Item Value
gene id echs1
gene name echs1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 59349556 ~ 59368121 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021606248.2
GTTGTGCCTGTTTACACACGTATCTGCCCGCATTGGCTAAAATGGTCCCGTCTGATGATGCCTCCTCCAGACCGCCTTACATTTGTtaagacatttattttcatttttagaGCCGTTATTAATGGCTAATCTGTGTTGACAATCCTCGGCCACTTATCCGTTTCCGGGTCACGAGTGAGGTTGATTGCAGTGAGAGCTCGTGTTGTGACTTTCAGCGCCAGCAACTTCGTGTTTGAAATGGCCCTGTTCTGCAGAACCGCAACACTGCTATTGAAGCCAGgagctctctcctccactctctctatcGCTCGTCAGTACAGTGCGGgtggtCAGTATGAGTACATCCTGGTGGAGAAGCGTGGAGAGAATCAGGATGTGGGCTACATCCAGTTGAACCGCCCCAAGGCTCTGAACGCTCTGTGTGACGGGCTGATGCTGGAGTTGGGAAAAGCGCTGGATGCATTTGAGGCCGACGGAACAGTGGGTGCCATCGTCCTTACTGGCAGCGACAGGGCCTTCGCAgCTGGGGCTGACATTAAGGAGATGCAGAATCGTACCTTCCAGGAGTGTTATGCCGGGAACTTCCTAGCTCACTGGAACAGAGTCTCTACCACTAGGAAACCAGTCATCGCTGCTGTCAACGGGTTCGCTTTGGGGGGAGGCTGTGAGCTTGCTATGATGTGTGACATCATCTTTGCTGGAGAGAAGGCTCAGTTTGGACAGCCTGAGATCCTTTTGGGAACAATCCCAGGTGCTGGTGGTACTCAGAGACTGACAAGGGCAGTGGGGAAATCTCTCGCCATGGAGATGGTACTGACTGGAGACAGGATCACAGCACAGGAGGCTAAGCAGTCAgGTCTGGTGAGTAAGATCTGTCCAGTAGACCAATTGGTGTCAGAAGCTATTAAGTGTGGGGAGAAGATCGCTGCCAACTCCAAGATCGTGTCTGCCATGGCAAAAGAGGCCGTCAACGCAGCCTACGAGCTGACGCTGGCTGAAGGGAATCGTCTGGAAAAGAGATTATTTCACTCTACCTTTGCCACGGAGGATCGTAAGGAGGGCATGACCGCGTTTGTGGAAAAGAGAAAGGCCAATTTCAAGGACCAGTAGAGGAGCAAAAACAAAACCCAACTGACCAGGATGTGAATCTCCGATCCAAGGGTTCCTGAAGGCTGTGTCCTGACTTGATATCTTGACTCTGATGTTGGCTTAGATGAGATTTAAGTAATCTAAACTGGAGATTATTGTGAAGATCAGACTTTTACATGTAGACCTTAAATTAGGAATTAGCCCTGAATGACACCcggacagacaatttaacagatgctcttatccagagcgatttacttGCCTTATCACAGTTTTATACCCTGTATGCAAACTGTGTTGTATGCTGTATGTGTGCAGTACAGTATAGTGTGTTTGTATGAAAGATGTTTTAGGTCATCGTCCATCATGGAAAAACAAATATCTTGTTGGGTGTAAATGGCAGAGGCCAAGCGATATCAGTCACAACCGCTAACACACACTTAACACAGCCTTTTCACTGTCCAACAGAATCTCACATTTTCTAGAAAAGGAATTTGTCCTGTGTACATTGTGCAAAATAAAGCCGTAGCAAGGTATGTATCTGTCTATTTGAGTTATTCAATCGGTCACATTGTAGGCATTAAGAAGAATAAAGCGAAAAATTCCTGTATAAGATGCATTTTCAGTGGAGATCCATTtagcatgctttttagtccagcgGTAGGTTTAATCTAGGTCCAGGAAACCAGCTCACAATGATCAGGTTTAATGTAACAATACCTTAATCTGTGTTTGGTGATAGACAGCTGTTTAGTTTGATGAAATGTCTATTGGGAAATGAAGTGAATAAAGTTAATAGATGGACGCGA

Function

symbol description
echs1 Predicted to enable enoyl-CoA hydratase activity. Predicted to be involved in fatty acid beta-oxidation. Predicted to be active in mitochondrion. Is expressed in EVL; gut; intestinal bulb; liver; and yolk syncytial layer. Orthologous to human ECHS1 (enoyl-CoA hydratase, short chain 1).

NR:

description
enoyl-CoA hydratase, mitochondrial

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0003824 catalytic activity molecular_function

KEGG:

id description
K07511 ECHS1; enoyl-CoA hydratase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021606248.2 True 1898 mRNA 0.46 8 59349556 59368121

Neighbor

gene id symbol gene type direction distance location
fuom fuom coding downstream 1319 59342322 ~ 59348237 (-)
spef1 spef1 coding downstream 31432 59310306 ~ 59318124 (-)
LOC110525737 LOC100196663 coding downstream 101046 59212580 ~ 59248510 (-)
LOC110525695 LOC106576879 coding downstream 150085 59144373 ~ 59199471 (-)
LOC110525690 LOC106576880 coding downstream 215227 58924580 ~ 59134329 (-)
mtg1 mtg1 coding upstream 11691 59379812 ~ 59398680 (-)
si:dkey-275b16.2 paox coding upstream 38023 59406144 ~ 59422417 (-)
rassf4a rassf4 coding upstream 70464 59438585 ~ 59507068 (-)
tmem72 tmem72 coding upstream 143432 59511553 ~ 59516732 (-)
LOC110532486 LOC106595224 coding upstream 273658 59549868 ~ 59644285 (-)
G65751 NA non-coding downstream 14529 59334780 ~ 59335027 (-)
G65747 NA non-coding downstream 21283 59327995 ~ 59328273 (-)
G65746 NA non-coding downstream 22080 59327148 ~ 59327476 (-)
G65745 NA non-coding downstream 23506 59325850 ~ 59326050 (-)
G65744 NA non-coding downstream 24262 59324636 ~ 59325294 (-)
G65815 NA non-coding upstream 85912 59454033 ~ 59458719 (-)
G65817 NA non-coding upstream 91932 59460053 ~ 59465429 (-)
G65851 NA non-coding upstream 147426 59515547 ~ 59515901 (-)
G65857 NA non-coding upstream 157745 59525866 ~ 59526216 (-)
G65862 NA non-coding upstream 164757 59532878 ~ 59533090 (-)
G65147 NA other downstream 563939 58784742 ~ 58785617 (-)
G63328 NA other downstream 1951068 57397194 ~ 57398488 (-)
G63093 NA other downstream 2286708 57035667 ~ 57062848 (-)
G61978 NA other downstream 2815581 56524970 ~ 56533975 (-)
LOC110526097 LOC106576849 other upstream 1062086 60430184 ~ 60495300 (-)
G68736 NA other upstream 2314157 61682278 ~ 61686308 (-)
LOC110526417 LOC106576819 other upstream 2613610 61981652 ~ 61983330 (-)
G69210 NA other upstream 3043401 62411522 ~ 62418296 (-)
G70013 NA other upstream 3909087 63277208 ~ 63277752 (-)

Expression


Co-expression Network