cxcf1a (cxcf1a)


Basic Information

Item Value
gene id cxcf1a
gene name cxcf1a
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 59483481 ~ 59485882 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>NM_001281351.1
ATgaactctgtcctgtctgtctacctgctgGCGAGTCTGTCACTTTACTGCCTACTGCTTACAGTGGGTAAAGGTGAGGGGCAGTTTGTTCCAGGGAGGTGTGAGTGTTATGACACAAAGATAACTGTCAGAGGACCACTGTCTGACCTCAAAGTCACACTCAAAGGCCTCACCTGCAACACTGACCAAATCATagTGGTAATGAAGAGGACcagtgagcctgtgtgtgtgaatCCAATGGGAGAACTGGGAAAACAGCTACTGCGCTGCTGGAAGAAaacCAACGGATTGGATAAGAAGAGGTGtctgagaaggaggagagggcaggggaaACGAGGACAGAAACAGAGGAAACTCAGGGGGCAATCTAAAGAGAGCAAAAGAAGGGCAACACCAATCCCTGCCTTAGGGTGA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
NM_001281351.1 True 414 mRNA 0.50 4 59483481 59485882

Neighbor

gene id symbol gene type direction distance location
si:ch211-217g15.3 LOC106576876 coding upstream 141205 59340539 ~ 59342276 (+)
erlin1 LOC106576878 coding upstream 183799 59284324 ~ 59299682 (+)
LOC110525756 NA coding upstream 271306 59210006 ~ 59212175 (+)
trnaa-ugc NA coding upstream 421601 59061807 ~ 59061880 (+)
fam160b1 fam160b1 coding upstream 645282 58808370 ~ 58838199 (+)
cxcl12a cxcl12a coding downstream 103782 59589595 ~ 59631391 (+)
LOC110525860 NA coding downstream 114023 59599905 ~ 59608419 (+)
ercc6 ercc6 coding downstream 239736 59725618 ~ 59778737 (+)
drgx LOC106576867 coding downstream 300247 59786129 ~ 59793763 (+)
lrrc18a LOC106576925 coding downstream 436793 59922675 ~ 59927138 (+)
G65519 rassf4 non-coding upstream 35673 59439236 ~ 59447808 (+)
G65488 NA non-coding upstream 90991 59391152 ~ 59392490 (+)
G65458 echs1 non-coding upstream 115463 59355120 ~ 59368018 (+)
G65456 NA non-coding upstream 134824 59348355 ~ 59348657 (+)
G65448 NA non-coding upstream 152156 59331101 ~ 59331325 (+)
G65572 NA non-coding downstream 49521 59535403 ~ 59535961 (+)
G65724 NA non-coding downstream 318372 59804254 ~ 59826592 (+)
G66057 NA non-coding downstream 352009 59837891 ~ 59838094 (+)
G66081 NA non-coding downstream 376830 59862712 ~ 59862927 (+)
G65442 NA other upstream 158352 59324636 ~ 59325129 (+)
G64338 NA other upstream 783102 58699296 ~ 58700379 (+)
G64315 NA other upstream 817575 58665334 ~ 58665906 (+)
G64292 NA other upstream 895896 58586858 ~ 58587585 (+)
G63959 fgfr2 other upstream 1260351 58221522 ~ 58223130 (+)
G66188 NA other downstream 455604 59941486 ~ 59942064 (+)
G67806 LOC106581772 other downstream 1828992 61314874 ~ 61315252 (+)
G67930 mcmbp other downstream 2243883 61729765 ~ 61733388 (+)
G70011 NA other downstream 3789081 63274963 ~ 63275296 (+)
LOC110526969 stk32c other downstream 5323707 64809255 ~ 64946164 (+)

Expression


Co-expression Network