lrrc18a (LOC106576925)


Basic Information

Item Value
gene id lrrc18a
gene name LOC106576925
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 59922675 ~ 59927138 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021606405.2
tctggggcagtAACATGGCTATACAGTCCTGGCGCCCTGGACTCCTGTTGCTTAGTAACGTCCTTAAACAACAGAAACCTTTTCCTGCCCACCTCTGtgtagagaaaaagagagtggaagagggaggGTGCAACTGGGGCATTGAGAGTGCATATTTCAGGACTAAACTCAACTCTAAATCTATTCATCCACATATGAAAGGTGTTTTCAAGTTTGATACTACCATAAACTATACTCTAATGGAGTCCACTAACTGAAACATCAGAACGTCTACAGTGTTTTGCAATTGCAAGATACAGCATTGTCTGAAAACGGAATTGTCTATGATTGTAAGGAACATGGTTCTCAGGTGGCAGGGAATGGCCAGTTAGCTGCTGacagacacactacactgctaccAAACTTCCCAGGCCAGATCAACTGGTCGAACCTCTTCACTCTACTGTAGATAAAGCATGCACCATGGCTAAAGGAGGGAAGAAAGGAGGAGGTGCTAAGGGGAAGAAGGTGACTCTGAAGATGGCCAAGAACGCTGTGCGTGTGACCACTGATGGCCACCGCAGACTGGACCTCAGTAATATGGGGATCGCAACCTTCCCCAAGTGTCTCCTCAAACTACCAGACCTCAACGAGCTGGACCTCAGCCGCAACCAACTCAAGAAGCTACCAGACTTCATTGGTGACCTGGTCTCGCTCAGCTGGATGGATCTCCATAGCAACCAGTTGGACGCCATACCGGAGACAGTCAGCCAATTGGTGGCGCTGTCACACCTCAACCTATCCAACAATCGCCTGACCTCTGCAGGTCTACCCCCTTCGCTAGGCAACCTAGCCCGCCTACGGAGCCTCAACCTGGGCATGAACCGCCTGGACACCCTGCCTCCCACCATGGTGGGGCTTTGTAGTCTCCAAGAGCTGGGCCTGTTTGATAACCTGTTCCTCTCCCTGCCTGAGTTTATCAAGGTGTTACCGAGCATTATCAGACTCAACACCAAGAGGAACCCTTTGTCCTACGCTCAGGGAGACTCGGGAGCGACGAGGGGTGAAGGGGGGCTGGAGGAGGGGGTGTACCTGGCTAAGGAGGGAAGTCTGTGTGGGTCCTGTTTGGAGAGTTGCAAGAAGGAGAGGAGCTGGATGctaggagggaggagggatagagaaggTGATGCGGAGAGCAGGGGTGTGCCGTACTCCGGGCTGGTTACACCAAACTCAGTGGCCCAAGCCAATCAGGAACAGTGGAGGTGAGGAGTGACCAATAATGGTCCAGGGAGAGGTTTGACACTCAAGGACAGCCAATGAACAACGGGATATAGTTCTACATAGCCAATGAGCAATTGAGCACAGTTCTATGATGTGATGATTGATTCAAATAGACAGTGCTCAAACCAACAAAATGGACAACAATGTTGCCATTGTAATTTTCTAATGAATATACTTTTCTATTGAAGTCAGGTCATGTCAATATACGTCACAAGGCACTGTGTCACTGTTTGTTTAGGTCGACAATGAACGTTAGCTGAATTTACAGTATTTCTTATTTTACCTGTGAAACAATGATTCCACAGGCCATTAAGAGAGGTTGCCTTCAGTCTTTATGttgtaaaatgtttaaaaataatgTCTTGAAAATTTGCAGTGGGTTCTTTCTGTTTCTTCTATATACATTATCAACCTgttgtatatgtgtatgtgcccaCATTCACCTGGCATTAGTTATGACCTCAGCAATCCCTCTAACGTCACCTCAATGCTGGCACCACTGAACAATGTGTATAGAGAGAGTAGgacgggagaaagagagaggtaaaagggGAAGAAATAACGAGGAGgtgaggtagaaagagagggaaatctctctctctctctctctccctctctctctctctctctctctctctctggtttcctGCGGCAAACGGCAAAGACCTCACACACGTACAGACTGTCTCTCCCAAACAACAGCAGCCCCTCTGTTACAGACAGGCCACTGATCACCACCATACACACATTAGCTTTAACCTggaagagagaggacacagagagtCCGTGTTGCATCATCATCGGAGGACATGACAGTGTACATCAAAGTGGGCTATAAGGCTATAAATATTGAACAAATGAA
>TU73299
GGTGTGCCGTACTCCGGGCTGGTTACACCAAACTCAGTGGCCCAAGCCAATCAGGAACAGTGGAGGTGAGGAGTGACCAATAATGGTCCAGGGAGAGGTTTGACACTCAAGGACAGCCAATGAACAACGGGATATAGTTCTACATAGCCAATGAGCAATTGAGCACAGTTCTATGATGTGATGATTGATTCAAATAGACAGTGCTCAAACCAACAAAATGGACAACAATGTTGCCATTGTAATTTTCTAATGAATATACTTTTCTATTGAAGTCAGGTCATGTCAATATACGTCACAAGGCACTGTGTCACTGTTTGTTTAGGTCGA

Function

NR:

description
PREDICTED: leucine-rich repeat-containing protein 18

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021606405.2 False 2125 mRNA 0.48 3 59922675 59927138
TU73299 True 327 lncRNA 0.43 1 59926193 59926519

Neighbor

gene id symbol gene type direction distance location
drgx LOC106576867 coding upstream 128912 59786129 ~ 59793763 (+)
ercc6 ercc6 coding upstream 143938 59725618 ~ 59778737 (+)
cxcl12a cxcl12a coding upstream 294421 59589595 ~ 59631391 (+)
LOC110525860 NA coding upstream 314256 59599905 ~ 59608419 (+)
cxcf1a cxcf1a coding upstream 436793 59483481 ~ 59485882 (+)
si:ch211-223a10.1 LOC106576865 coding downstream 42374 59969512 ~ 59993651 (+)
LOC110525930 LOC106576864 coding downstream 72272 59999410 ~ 60018695 (+)
LOC110526033 LOC106576855 coding downstream 256077 60183215 ~ 60218672 (+)
LOC118966766 NA coding downstream 289983 60217121 ~ 60217262 (+)
LOC110526041 LOC106576856 coding downstream 302333 60229471 ~ 60264209 (+)
G66145 NA non-coding upstream 14686 59907712 ~ 59907989 (+)
G66142 NA non-coding upstream 14974 59907120 ~ 59907701 (+)
G66121 NA non-coding upstream 30809 59891511 ~ 59891866 (+)
G66094 NA non-coding upstream 52857 59869443 ~ 59869818 (+)
G66082 NA non-coding upstream 59408 59863030 ~ 59863267 (+)
G66187 NA non-coding downstream 11420 59938558 ~ 59938812 (+)
G66214 NA non-coding downstream 93339 60020477 ~ 60020701 (+)
G66225 NA non-coding downstream 100099 60027237 ~ 60091030 (+)
G66269 LOC106576859 non-coding downstream 203181 60130319 ~ 60141209 (+)
G66308 NA non-coding downstream 248840 60175978 ~ 60176307 (+)
G65442 NA other upstream 597546 59324636 ~ 59325129 (+)
G64338 NA other upstream 1222296 58699296 ~ 58700379 (+)
G64315 NA other upstream 1256769 58665334 ~ 58665906 (+)
G64292 NA other upstream 1335090 58586858 ~ 58587585 (+)
G63959 fgfr2 other upstream 1699545 58221522 ~ 58223130 (+)
G66188 NA other downstream 14348 59941486 ~ 59942064 (+)
G67806 LOC106581772 other downstream 1387736 61314874 ~ 61315252 (+)
G67930 mcmbp other downstream 1802627 61729765 ~ 61733388 (+)
G70011 NA other downstream 3347825 63274963 ~ 63275296 (+)
LOC110526969 stk32c other downstream 4882451 64809255 ~ 64946164 (+)

Expression


Co-expression Network