LOC110526033 (LOC106576855)


Basic Information

Item Value
gene id LOC110526033
gene name LOC106576855
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 60183215 ~ 60218672 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021606624.2
CTTGTTCCATCAGTGCACGattcacataaaaaaaaataaaaaaaatccccgcAAAGAGCAAGAGTTGTTGCTAAGATGGCGGCGCGGTGGGGAGCAGGCGAGGCGATGTTAACTGCCTGCAACATGGATTTTTTCTCTACAAATACACTGGACGAGGCGGTGATCCTCCATGGGGGCCTGTCTAGTGACAGTCTGGAGCTGGAGACAGGAGAAGCTCTGGAGGCCCTGTGCTGTCTGGACCCCTCCATACTGTCCATATTTGAGGATACAACCACAGGAGAGAATAAAGTTGGACTTGATGAGGATAACGAGGCGACGCTGCTCACAGCTCTGACTGAGATCCTGGATAACGTGGACAACGAGAACCTGTCCCCCTTCGACACACTGCCAGACTCTGATTTACTGACTGGCCAGAAAGGCCGGGAACACTCTCCGCTGAGGAGACTGCTTTGCTTGTCCCACTCGTCTCCAGAGAGTGAGAGACCCTGCAACACGCGACAGTTCTCCACTGGGAAGAGTCTCCCCAGGACACAGGAGTCTGTCCAGAGGAGTGACGGAGAGGAAGAGGACACAGAGGCTTGTTCTCCCTCCCTGAGCCCAGACAGACAACCCTCGTCCCCAGAGCAAGAGCTCCTGACCTGGGGTGGCCTGCCTCTGGAGCAGcacatggatggagagagcatgtCAGTGAGTCTAGGAGAGCTGGTCAGACACATGCACCCctattgcatggcagtgtgcgtGGAGGATGAAGGGGAAGAACGGCTGCTGGCGGAGGAAGGGATACTGCTGGAAGTGGTCGAACATGGAGAGCATGGCGAGACTATATTTGCCATCCCAGATATGGGCATCCCTtatgctcatctctctctctccttgccggGAGTAGAAGACTCATTCAAAGCGGAGCAGAGGGTTCCAGATGAAATTTCTGAAGCGGATATGTTGGAGACGCCAGAGTCTGAGTCGGCGAATGATGTCGTAGTTGATGACGTAGCAAAGGTGGCTGGCCCTTCTGACCCTGCCGAGACCCTGAGGGCAAAAGCAAGTGGTGAGAATGTTATCTACAGGAGACCAAAGGAGGAGACTGTAGAAAGATGTCTGTCTCGAAGGAAAAAGAAACGGAAAAACAAAGTGAAGCGTTCACCTGCTGAGGTCACCCCTGAACCTGCCCAGGCAGAGGGCAGGGTCCTGAGGAGCGCGTCCCATAGGGGCGCCGCCCAGGAAACTTCGGCCCGGAAGCCCATCAAAGAGACGACCAGACCAGAGAAAAAGGACAAAGAGACGTTTTCTTCTGCCATATCTATGGCTGCCCCCGAAGCCCCAAAACAGAAGACGAGAGCAACACATGCTGGCGAAACACAACACGTACAGCGACAGAGCCATGTGGAAGTCACAACCTTAACACTATCCACACACCCCAGCGTTAAGGTCATCCCCGCCTCAGACCATGTGTTGAAGGTCATGGCCTCTGACCTGTTGCCAGTGACTATGACCCCAAAGAAACTCCCCCAAACAGCCACAGGCTGCGAGAAGCCTCAAAGCCTTCTAGCTTCTGCAGCTAACCCAACAGCCCCCCAGGCAATGACAATCAACCCTGCAGCACCCCAGGCGCTTAACCCAAGTGAACGACCTGTGTCAGTGGCCCCCCAGGCAATAATGCAGTCCAACAGTGCCTCTCTAGCGGCCCCCCAGGTGATCCCCAAGCCCATTAAGGCCTCCCAGGCTATTGAGCCCAAGCCTAAGCCCCTGTCCCTCCAGCAGTACCGGCTGCTGCGGCAGCAGAAGAAACCGGCCCCCTTAGAGAGACCAGAGGACCAGAGCACCAAGTGGCCCAGCCTCCCTGATGCCCCTACCGAGTTGCCCCCTATCCCCTGCCTCCCCATCCCCTCTTCCAGAGACCCTCGTcgcccccacccctccccaggGAAAACTGAGGTGGAGGTGAAAGCGGCCTGGCAGCCCATGGGACCAGGAGCACCTCCTACACCTGAAGCTCTGCTTGTGCCTCCTGCTTACATGCTGGCCTCCAAATCATCTTCCCCAAGCAAGGCTTCTAGTGCAAATGCATCCCCTATAACCCCTCCCCAGCAAGCGGCTGTTCCTACTCAACAGCCAGCTAAAGCTAGCCAATCCCCCATCTCCGTTGTGCCTTCATCCAGTACTGTGAGTGTAGTACCCCCACCACCCCAGAACCCTTTTGTGAAGCGTAATATACCCCAGGCCCCCCATCCTGCACTCACGAACCCCCTGCTCCAGTCCCAGCTACCCTCCAAGACTGTGGTCCTTATCAAATCTCAGAGCTCCAGTGGAGCCTCTTCTAAAACCACTACAGCTGCCAACAGGCCCGCCCTAATTGCTACTATAGCCCAAAAACCAACCCCTGTCGCTGGTGCTCTACTTGAGAAAACTTTCAACTGCACCACCAACGCTGCTGCTGTTTCTGTTCAGAAACCTACCCCTCCTTTGAAGGTGGCTACTACTCTCCAGAAGGGAGTAGTAGTTACTCTGCCCCGGCCTAAGATGCCTGAGCTGCCTACAGTCACTCCTGggtctaccccagccaaaccctccaccACCCAGTCCTCCAAACCTGCAGTGAGGTGTACTACAGCCCAGGAGGCCCCCAAAGCCAAGAGCCCTACTCAGGAGCTGATAGAGGCATTCACCAGTGAAATTGGTATTGAAGCTGCTGACCTCACCAGCCTGCTGGAGCAGTTTGAAGAGACTCAAGctAAAGAGGAGCAGTATGTTCTGGAGGTCTCTGGTAGAGCAGCAGCTGTAGGAAACTCTAGTGTGGAGCGGCCATGTGACAGGACAGTTGTGGAGAGAGTCGGCACACATGACCTGGCAAGCACTGCAGGTCTGACCCCTCCAGCTACTCCTCCTCACCAGATGTGGAAGCCCTTGGTCCCTGTGGCACTCCTTGGGAAGAACCGAGTGGCTGAGACCCCCAAACCATCGCCCTCCAAGGCCATCCAGATCAACGCGCGGCCCCTGCCCGCCAACAAGCTCCGAAGCAAGCCTCCCAGCCCCCCTATAACTCCCACCCCCAACACGGTGGCTCTCACCCTGGCTTTCTCAGACCACGACTACTGCCTCCCTCAGAAGGAGCCTGTGGCTATTGCTGAAGAGCCAGGCAAGCGCTGGAATGTCAAACAGCAAGCAGCCATCACCATCAGGACCATCGAGCCGCTTGGCAGCACCACTACCAGGGCACCCCAGAGGATCCCTGCCCCCTCACTCCAGACCCTCATTCCTGCCCTGTGTACGAAGACCCAGCAGGCTCCCCTACCCCTGGATGTAAGGACTGATAGGACTAGCTCTGTGCTGGGTACCCCTGACGCTTCTCCCACCAGGCAGGAGCAACAGGTTGGTGCCCTGGAGATGAGTCCCAAGAAAGGGAGATCCTACCGGGGCCACAACATTACCTGCTCCCCCAGCCCCAGGGAAGAAAAGGGAGGACGCGAGAGGAAAAGGAGAATCCACCATTCCTCCAGCCCTTGTTCTACTGACTCGGAGTCTGACTTTCACTCCTCTTCTTCTCAGTCTAGATCTTGCTCTCCACCCAGGAAGAGgtaCAGGCCTCGTCACTCTAAGAGCAGCTCCAGTTCCTCGTCTTGCTCCTCTCGTTCCTCCTCTCGTTCCTCCTCtcgttcctcctctccttccgtGTCCCGTTCTCCTCCCAGGCGGCGGTATTCCTACTCCTCTTCCCGATCTGGATCCTGGAGTAGGTCCCGTTCCCGCTCTCCCCACAGACGGGCATGGCGCAGAGGCAGTAGTCCACGCAGaCCAGGCTACCGGCCTGAATCTAGAGAAAACAGCCAGGAGGTGAAGAGACTCAAAGAAAAAGCGATCGAGGAGCGTAGGGTTGTTTATGTAGGGCGAATCCGGGGGACAATGACTCGGAAAGAGCTGAGGGAACGCTTCTCTTTGTATGGAGAGATTGAGGAGGTCACTCTACACTTTAGAGACCATGGGGATAACTATGGGTTTGTGACGTACTACGATACGAAGGATGCGTTCACAGCCATCGAGAATGGTGGCAAACTCCGAAAGCCTGACGAACTCCCCTTTGACCTTTGCTTTGGGGGAAGGAGACAGTTCTGCAAGGCCAGCTACGCTGATCTAGaTTCTAACCGCGAGTATGACCCGTCGCCTGCAAAGGGCAAGTTTGATGTACTTGACTTTGACACTTTACTGAAGCAGGCCCAGAAAGGTCTGAAGAGGTAACAGAGGTCAGCCCACTGGGGGCGCCATGCTAAGACTTACCTCAGAGCCGCGGCAGGCTCCTCCCACCTTCAACTCTGCCTTCGCCTTGACCTAGGGGTGGATCGCAACCAATGGTCAAAACGTTAGCCAGCTGACATCGATAAACATACAGATGTAGCTCTTTTCTGGTTCATAAAAGCTACAGTTTAAAGCTGCAATCTGGAAAATAACCTTAGATTTTGGGTTATAAGAGTAAGGCATTGTAAGAAGCTCATAGGGCATTTAAGTTACGTTCAAGTCGATGGAATCAATGTCATCAATTGAATCAAATGCATCAGAATCTATCATTAATTGAAAATGGTTGGATGGCAGGAAGTCTAGCTTTTTATATGGATTGTTTTAAGTTTTAAATCATTTATCCCATGTTCATTTCAAGCTTGTCTTTATGAACTCAAATGTTATTTCTGAATAATTTGAAGTGACAGCTGGCTAACGGGTTGTCCTGCATTGTGACAGAGCTACCGGTCTTTATTTAGGtaggtttttttttgtgtgtttttgtttctgCAAGCTTACACCTTCTATTGAAGTGAAGATTTGTATGAAAAGATTaaaagcaaaaaaagaaatgaaaTGGAAAACTTTTTAACCGGAAAGAATTTATTTAAATGTGTAATCAGATTTTCCACAATATATGGGgggaaaaaatatgttttagaaaTGGGGATACTAAAGTGAATATTCCCTGATATTTGGGAGAAAGTGGAACTACATTGCTGAAATGTACCGCAAACCTAAATAAACCAAACTTTTTAAACTGG

Function

NR:

description
unnamed protein product

GO: NA

KEGG:

id description
K17963 PPRC1, PRC; peroxisome proliferator-activated receptor gamma coactivator-related protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021606624.2 True 5036 mRNA 0.53 14 60183215 60218672

Neighbor

gene id symbol gene type direction distance location
LOC110525930 LOC106576864 coding upstream 164520 59999410 ~ 60018695 (+)
si:ch211-223a10.1 LOC106576865 coding upstream 189564 59969512 ~ 59993651 (+)
lrrc18a LOC106576925 coding upstream 256077 59922675 ~ 59927138 (+)
drgx LOC106576867 coding upstream 389452 59786129 ~ 59793763 (+)
ercc6 ercc6 coding upstream 404478 59725618 ~ 59778737 (+)
LOC110526041 LOC106576856 coding downstream 10799 60229471 ~ 60264209 (+)
LOC110526060 zdhhc16 coding downstream 82821 60301493 ~ 60370189 (+)
LOC110526075 NA coding downstream 87097 60305769 ~ 60308241 (+)
LOC110521558 LOC106576852 coding downstream 155380 60374052 ~ 60391626 (+)
rrp12 rrp12 coding downstream 184409 60403081 ~ 60427711 (+)
G66310 NA non-coding upstream 2966 60179896 ~ 60180249 (+)
G66308 NA non-coding upstream 6908 60175978 ~ 60176307 (+)
G66269 LOC106576859 non-coding upstream 42006 60130319 ~ 60141209 (+)
G66225 NA non-coding upstream 92185 60027237 ~ 60091030 (+)
G66214 NA non-coding upstream 162514 60020477 ~ 60020701 (+)
G66370 NA non-coding downstream 92834 60311506 ~ 60312165 (+)
G66372 NA non-coding downstream 97633 60316305 ~ 60316536 (+)
G66375 NA non-coding downstream 101921 60320593 ~ 60320833 (+)
G66435 NA non-coding downstream 276061 60494733 ~ 60495095 (+)
G66475 NA non-coding downstream 286910 60505582 ~ 60505809 (+)
G66188 NA other upstream 241151 59941486 ~ 59942064 (+)
G65442 NA other upstream 858086 59324636 ~ 59325129 (+)
G64338 NA other upstream 1482836 58699296 ~ 58700379 (+)
G64315 NA other upstream 1517309 58665334 ~ 58665906 (+)
G64292 NA other upstream 1595630 58586858 ~ 58587585 (+)
G67806 LOC106581772 other downstream 1096202 61314874 ~ 61315252 (+)
G67930 mcmbp other downstream 1511093 61729765 ~ 61733388 (+)
G70011 NA other downstream 3056291 63274963 ~ 63275296 (+)
LOC110526969 stk32c other downstream 4590917 64809255 ~ 64946164 (+)
LOC110527164 LOC106576754 other downstream 5697063 65915581 ~ 65922285 (+)

Expression


Co-expression Network