LOC110526047 (LOC106576854)


Basic Information

Item Value
gene id LOC110526047
gene name LOC106576854
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 60281672 ~ 60301313 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021606648.2
CCAATGAGGAAAAGTTTTCATAGGTGGAGCGAGCAACAAGTCACGCAGTTGAGTAGGGCAAGGAATAGGGGACCgatagtaaaaaaatatatattggtaGCAAtatcaacaaaaacaaaaaatacagGGACTGTTTCATCAACCAACATTAAACCAAGGGATCCTTCCTTATCTTCGCGAAGAAAGTAATTTCTGTCGCCCTTTCAGGTATTACCACATTTTTAAAAAAGCTGGGATGGACGAGGTGCGGCCTATCATCGGACCAGCAGCAGCCCCTGGGCTGGCGTCAATCTTCCCCCCGGGTCTGCAGGCAATCTACGGGGAATGCAGGCGCCTCTACCCCGACCAGGCCAACCCCTTACAAGTTACAGCCATTGTCAAATACTGGTTAGGGGGTCCTGATCCATTGGACTACATCAGTATGTACCGTAACGTTGGCTGTGCAGCGCAGGATGTACAGGAGCACTGGCACTACATCAGCTTCGGACTCAGTGACCTGTATGGAGACAACCGAGTACATGAGTTTACAGGTCAGGAAGGCCCCAGTGGCTTTGGCTTTGAGCTGACGTTCAGGctgaagagagaggtgggagagaccGCACCCCCTACCTGGCCGGCTGAACTCATGCAGGGCCTGGCCCGCTACGTCTTCCAATCAGAAAACACATTTTGCAGTGGAGACCACATATCCTGGCACAGTCCCCTGGACAACAGTGAGTCTCGTATCCAACACATGCTGCTCACTGAGGACCCCCAGATATCGCCGGTCCACACACCCTTCGGCCTGGTCAACTTCTTGCAGATTGTGGGTGTGTGTACAGAAGAGTTGCAGGCGGCCCAACAGTGGAATGGCCAGGGAATACTGGAGCTTCTCCGAGGGGTCCATGTTGCTGGAGGACCCTGGTTGATAACTgacatgaggagaggagagaccatgtTTGACATCGACCCGCATTTACAACAGGAGCGTGTGGACCagggtatagagacagagggatCCAACCTGAGTGGCGTGAGCGCAAAGTGTGTGTGGGACGACCTCAGCCGGCCGTCCGAGGATGAAGAGGACAGCCGCTCCATCTGTATAGGATCTCAGCCACGAAGACTGTCGGAGAAAGATACAGAGCAGATCAGAGAAGCCCTGAGGAAAGGACTGGAGTTCAACACCAAAGCAGCACTACCCCCTATCAACTCACAGAAACAAGGACACGACAGGCCTCAAAGTCGTAAGGACAGTCTGGAGAGTGAGAGTTCGGCGGCCATCATTCCTCACGAGCTAGTTCGTACCAGACAACTGGAAAGTGTTCATCTGAAATTCAACCAggagtcaggaacactgctgcctctctgtctcagGGGTCGTTTGCTCCATGGTAGACACTTCACCTATAAGAGTATTAATGGAGACACGGCCATCACCTTCGTATCCACTGGAGTAGAGGGGGCCTTTGCTACTGAGGAACACCCATACGCCGCACATGGACCCTGgctacagaTATTGCTGACTGAAGAGTTTGTTGAACAGATGCTTGGAGACCTATCGGAGCTCAACACTCGAGAGGAGACCAAGTTACCAAAGGAATATAGCTGGCCAgagaagaaactgaagatctcggtCCTGCCTGACTCTGTGTTTGACAACCCTCTGCAGTGAGACTGGGATCCACTCCTCTTTTCAGAGTACTCTGGACCTCCTTACACAGTCAGTTCCCATGGATGGACCTATTCACCCAGCCTTTAaatgggtcatgttcattaggacaAATTGTAGCAAAGTGTTTTGCAGCAGAATATGAATACaagttgttttttattttattttattggacaagttcagatagTAGCTCTGGTAACACACGTTTCGGATATTTATCTCTCATTTTGTGCCTACTGAGCACAACCATGCTCTTTTCCAGGGGCTCTGGTCTGCCTTGTATACCCAGGGCGAGAGAGCCTGACCCAGCTACTGCAGGATGTCTTATCACATCTTCCTTTGACTGTAGACTGTTACTGCCTTCTCTGACCTACCCACCTTTTTCTACTGGGTTTTTCAAACCTTTAGAAACATCTGGAAATGTTCTGGAAACCTGTTTTTCCAAATAGCTGCCTTGTTAGATGAGACGTGGTTGCCATGCCTTGTGAATGGGTCAAATGTCTAGTTATAAAGAGACATCCACTAGACCCGATGAGTTTGTAACACAAACAAAGATGCCGGGTCAGTTGATTTAGTTCAAacatatgtttgtttttttagtgGAATTTTGTTTATTTCAATGTTTTCATGAATGTCACTAATTATAACTGGTGaggtaaaaataatgaaaaactataccaaatctattcattttaaaatgttgatcatCTCTCCCtgccattatcattcacctgatgaGATCTTATTTTTATTTTGCCATATTTTGGCAAGGAAAGTTTGAAGACCCCTGCCGACTTCTGTTAAAATCAATCAAACCACATAATCCTCTAATTCTATTCTGTGTCTGTCAAATCTTAGTTGTCCCTCTTTGCCAAGAGAGCCCAATTATTTTATTGAGTAATATTTTCTGTGTGTATCGTTTCCCCTTCATTTGATTTTTAGATCAAGATGACCCTATTCTGTAACTTGCTCATGAAATGTATCTCCTAAAGCTCTACAATGACTTAACTACTATCAGTGGAAAGATTGTGTTTGTAAGAGTTTTTATAAGGGCTGAGAGAGAGTGAAATGTGGGAGAGCGTATCAGAGAACGTCCCATGTGGCCACACAAAGTTAATCAGTGAGAAAGTTAGACCAACAGTTACTGTCGTGTGTTTCTTGTCCTTTAATTGAATCAGAGTTGATCGAACTCACACTAATTCCTCCCATCTCTGTGTTTTGCTTTTTTAGGAAGCCAATAGAACTTGTCAAACCCTTGGTCGACTCCACGTTTCTGATCAATACTTTATTGGAAACTCATTCTTTAGTTTTGATACCAAAGCCAAAACTTGTGATACTTTGTCCTTTATCGCTGTCACAATGCGTGTCCTCAACTGTTACGCTAATGTATTGTGTTCTCGTGGATTGACTCTCGCCGCCGTTTCAGTCCACCGAGGCTTTAATGTTTAGACTCCGTGTATCGTCTAGACTCTCCACTGCCTATCGCTCCTGTGTTTTAATGTACATTAATTTCGATCAAGGACCTCGGTCTTCATACACATACGGCATCCCAGATGTCTCTTAATGCCATGACTGCATTCCATAGCTAGGTAGTCCAGAACAGGAGCTAAGTAACTCTTCTCTTTCTACAGTGGCCTCCTGTTCGGCCATATGTATTTTACTGTGTCTTTCTGGTTTTATTTCCGGGTGAAAATGTAAAAGAGCTTTTATTAGGGCATTTTTGAAAGGTAAGTTTTGTAGTACTGTTATTTTATGAGTGAATGAATTACTTAACTGCCTGTTTCTATGTAATCACAAGTGCATTAAACAAGTGTACATTCAAGTCAGTGTTTTTTGGTCTAATGGTCTATTGACGTACTAAAGTGTAAATAAATGAAAGACATGCTCCGGGA
>XM_021606656.2
CCAATGAGGAAAAGTTTTCATAGGTGGAGCGAGCAACAAGTCACGCAGTTGAGTAGGGCAAGGAATAGGGGACCgatagtaaaaaaatatatattggtaGCAAtatcaacaaaaacaaaaaatacagGGACTGTTTCATCAACCAACATTAAACCAAGGGATCCTTCCTTATCTTCGCGAAGAAAGTAATTTCTGTCGCCCTTTCAGGTATTACCACATTTTTAAAAAAGCTGGGATGGACGAGGTGCGGCCTATCATCGGACCAGCAGCAGCCCCTGGGCTGGCGTCAATCTTCCCCCCGGGTCTGCAGGCAATCTACGGGGAATGCAGGCGCCTCTACCCCGACCAGGCCAACCCCTTACAAGTTACAGCCATTGTCAAATACTGGTTAGGGGGTCCTGATCCATTGGACTACATCAGTATGTACCGTAACGTTGGCTGTGCAGCGCAGGATGTACAGGAGCACTGGCACTACATCAGCTTCGGACTCAGTGACCTGTATGGAGACAACCGAGTACATGAGTTTACAGGTCAGGAAGGCCCCAGTGGCTTTGGCTTTGAGCTGACGTTCAGGctgaagagagaggtgggagagaccGCACCCCCTACCTGGCCGGCTGAACTCATGCAGGGCCTGGCCCGCTACGTCTTCCAATCAGAAAACACATTTTGCAGTGGAGACCACATATCCTGGCACAGTCCCCTGGACAACAGTGAGTCTCGTATCCAACACATGCTGCTCACTGAGGACCCCCAGATATCGCCGGTCCACACACCCTTCGGCCTGGTCAACTTCTTGCAGATTGTGGGTGTGTGTACAGAAGAGTTGCAGGCGGCCCAACAGTGGAATGGCCAGGGAATACTGGAGCTTCTCCGAGGGGTCCATGTTGCTGGAGGACCCTGGTTGATAACTgacatgaggagaggagagaccatgtTTGACATCGACCCGCATTTACAAGAGCGTGTGGACCagggtatagagacagagggatCCAACCTGAGTGGCGTGAGCGCAAAGTGTGTGTGGGACGACCTCAGCCGGCCGTCCGAGGATGAAGAGGACAGCCGCTCCATCTGTATAGGATCTCAGCCACGAAGACTGTCGGAGAAAGATACAGAGCAGATCAGAGAAGCCCTGAGGAAAGGACTGGAGTTCAACACCAAAGCAGCACTACCCCCTATCAACTCACAGAAACAAGGACACGACAGGCCTCAAAGTCGTAAGGACAGTCTGGAGAGTGAGAGTTCGGCGGCCATCATTCCTCACGAGCTAGTTCGTACCAGACAACTGGAAAGTGTTCATCTGAAATTCAACCAggagtcaggaacactgctgcctctctgtctcagGGGTCGTTTGCTCCATGGTAGACACTTCACCTATAAGAGTATTAATGGAGACACGGCCATCACCTTCGTATCCACTGGAGTAGAGGGGGCCTTTGCTACTGAGGAACACCCATACGCCGCACATGGACCCTGgctacagaTATTGCTGACTGAAGAGTTTGTTGAACAGATGCTTGGAGACCTATCGGAGCTCAACACTCGAGAGGAGACCAAGTTACCAAAGGAATATAGCTGGCCAgagaagaaactgaagatctcggtCCTGCCTGACTCTGTGTTTGACAACCCTCTGCAGTGAGACTGGGATCCACTCCTCTTTTCAGAGTACTCTGGACCTCCTTACACAGTCAGTTCCCATGGATGGACCTATTCACCCAGCCTTTAaatgggtcatgttcattaggacaAATTGTAGCAAAGTGTTTTGCAGCAGAATATGAATACaagttgttttttattttattttattggacaagttcagatagTAGCTCTGGTAACACACGTTTCGGATATTTATCTCTCATTTTGTGCCTACTGAGCACAACCATGCTCTTTTCCAGGGGCTCTGGTCTGCCTTGTATACCCAGGGCGAGAGAGCCTGACCCAGCTACTGCAGGATGTCTTATCACATCTTCCTTTGACTGTAGACTGTTACTGCCTTCTCTGACCTACCCACCTTTTTCTACTGGGTTTTTCAAACCTTTAGAAACATCTGGAAATGTTCTGGAAACCTGTTTTTCCAAATAGCTGCCTTGTTAGATGAGACGTGGTTGCCATGCCTTGTGAATGGGTCAAATGTCTAGTTATAAAGAGACATCCACTAGACCCGATGAGTTTGTAACACAAACAAAGATGCCGGGTCAGTTGATTTAGTTCAAacatatgtttgtttttttagtgGAATTTTGTTTATTTCAATGTTTTCATGAATGTCACTAATTATAACTGGTGaggtaaaaataatgaaaaactataccaaatctattcattttaaaatgttgatcatCTCTCCCtgccattatcattcacctgatgaGATCTTATTTTTATTTTGCCATATTTTGGCAAGGAAAGTTTGAAGACCCCTGCCGACTTCTGTTAAAATCAATCAAACCACATAATCCTCTAATTCTATTCTGTGTCTGTCAAATCTTAGTTGTCCCTCTTTGCCAAGAGAGCCCAATTATTTTATTGAGTAATATTTTCTGTGTGTATCGTTTCCCCTTCATTTGATTTTTAGATCAAGATGACCCTATTCTGTAACTTGCTCATGAAATGTATCTCCTAAAGCTCTACAATGACTTAACTACTATCAGTGGAAAGATTGTGTTTGTAAGAGTTTTTATAAGGGCTGAGAGAGAGTGAAATGTGGGAGAGCGTATCAGAGAACGTCCCATGTGGCCACACAAAGTTAATCAGTGAGAAAGTTAGACCAACAGTTACTGTCGTGTGTTTCTTGTCCTTTAATTGAATCAGAGTTGATCGAACTCACACTAATTCCTCCCATCTCTGTGTTTTGCTTTTTTAGGAAGCCAATAGAACTTGTCAAACCCTTGGTCGACTCCACGTTTCTGATCAATACTTTATTGGAAACTCATTCTTTAGTTTTGATACCAAAGCCAAAACTTGTGATACTTTGTCCTTTATCGCTGTCACAATGCGTGTCCTCAACTGTTACGCTAATGTATTGTGTTCTCGTGGATTGACTCTCGCCGCCGTTTCAGTCCACCGAGGCTTTAATGTTTAGACTCCGTGTATCGTCTAGACTCTCCACTGCCTATCGCTCCTGTGTTTTAATGTACATTAATTTCGATCAAGGACCTCGGTCTTCATACACATACGGCATCCCAGATGTCTCTTAATGCCATGACTGCATTCCATAGCTAGGTAGTCCAGAACAGGAGCTAAGTAACTCTTCTCTTTCTACAGTGGCCTCCTGTTCGGCCATATGTATTTTACTGTGTCTTTCTGGTTTTATTTCCGGGTGAAAATGTAAAAGAGCTTTTATTAGGGCATTTTTGAAAGGTAAGTTTTGTAGTACTGTTATTTTATGAGTGAATGAATTACTTAACTGCCTGTTTCTATGTAATCACAAGTGCATTAAACAAGTGTACATTCAAGTCAGTGTTTTTTGGTCTAATGGTCTATTGACGTACTAAAGTGTAAATAAATGAAAGACATGCTCCGGGA

Function

NR:

description
suppressor of fused homolog isoform X2

GO: NA

KEGG:

id description
K06229 SUFU; suppressor of fused

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021606648.2 False 3546 mRNA 0.45 12 60281672 60301313
XM_021606656.2 True 3543 mRNA 0.45 12 60281672 60301313

Neighbor

gene id symbol gene type direction distance location
LOC110525977 LOC106576859 coding downstream 109130 60130315 ~ 60172542 (-)
LOC110525964 LOC106576862 coding downstream 157530 60089990 ~ 60124142 (-)
LOC110525944 LOC106576863 coding downstream 216766 60027218 ~ 60064906 (-)
LOC118964951 NA coding downstream 257088 60016544 ~ 60024584 (-)
LOC110532486 LOC106595224 coding downstream 637387 59549868 ~ 59644285 (-)
LOC110532500 NA coding upstream 33671 60334984 ~ 60336221 (-)
LOC110526081 NA coding upstream 41276 60342589 ~ 60349309 (-)
LOC110526097 LOC106576849 coding upstream 128871 60430184 ~ 60495300 (-)
gdf10a LOC106576847 coding upstream 224106 60525419 ~ 60538921 (-)
LOC110519525 LOC106576846 coding upstream 359154 60660467 ~ 60695525 (-)
G66922 NA non-coding downstream 17471 60261877 ~ 60264201 (-)
G66905 NA non-coding downstream 65139 60207483 ~ 60216533 (-)
G66880 NA non-coding downstream 101467 60179933 ~ 60180205 (-)
G66878 NA non-coding downstream 103727 60177677 ~ 60177945 (-)
G66876 NA non-coding downstream 105370 60175960 ~ 60176302 (-)
G66967 NA non-coding upstream 7332 60308645 ~ 60308903 (-)
G66966 NA non-coding upstream 11497 60312810 ~ 60313056 (-)
G66969 NA non-coding upstream 14725 60316038 ~ 60316240 (-)
G67011 NA non-coding upstream 68484 60369797 ~ 60371381 (-)
G67056 rrp12 non-coding upstream 115981 60417294 ~ 60421548 (-)
LOC110525695 LOC106576879 other downstream 1126527 59144373 ~ 59199471 (-)
G65147 NA other downstream 1496055 58784742 ~ 58785617 (-)
G63328 NA other downstream 2883184 57397194 ~ 57398488 (-)
G63093 NA other downstream 3218824 57035667 ~ 57062848 (-)
G61978 NA other downstream 3747697 56524970 ~ 56533975 (-)
G68736 NA other upstream 1380965 61682278 ~ 61686308 (-)
LOC110526417 LOC106576819 other upstream 1680418 61981652 ~ 61983330 (-)
G69210 NA other upstream 2110209 62411522 ~ 62418296 (-)
G70013 NA other upstream 2975895 63277208 ~ 63277752 (-)

Expression


Co-expression Network