LOC110526060 (zdhhc16)


Basic Information

Item Value
gene id LOC110526060
gene name zdhhc16
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 60301493 ~ 60370189 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036981500.1
TGCGCCCCTGGAAATAGACACTAAAGTCGACAAACTGTACAAACAATCTAGGCCATTTTTTTGATCTACTGCTCTGCTAACGCTATTAACTATGCCTATGTAACGTGTCTGTAACCAGCTTCTGACAGACATTCACTATGGTGCAtcaagtttgttggaacctctccagcgcgctgacaataaacaatgattaATTTAAGATGGACTTGTactgtccctgtgtaagaatttccacaacaaTTTGGCGTCAATGAACAGGGTCATTGATTCTGCCTGCGGAGCTTTCAAGTGAGCGTCTGCAAGGAAAACCGGTGGTGCATTTTATTAAGCGTGAGGGAAATTCCTGTCTGACTAAAATACGACGAGACTCGCCCAGACCAGAACCTTTCTGTTATCTGCCCAGGAGGAGACACATCATCTGCGAACAATTGAGGGATGGCAACTGATTTCAgagaaGAATGCGGCTGTGCCCCACCTTCCTGCTGCAGCGCTggctgtggttgtgtgtgtgcgccagACAGTGGCACTGCAGAAATGGCAACAACTGCAGACTACCGCTGTGTGTGAGGCAGATATGGGCCTACCTCAGACTGATGGTCGACTCCCTCTATTACAACACCCTCACCAACTCTGATGTCGTCATGGACTCACTGATGGAACCCATCTTATGGATGGTGGACCTACTCACCCGCAGGTTCGGGgcggtgTTTGTATGTCTGTTAGTGATACTGACCACTTCTATTCTGCTGGTAGTCTATGTGGTTATGCTGCCCGTGATCTTCGACACGTACTCTCCATCCTGGATAGCCTGGCACATGAGTTACGGACACTGGAACCTTGTCATGATCGTCTTCCACTATTATAAAGCTACCAATACTGCCCCAGGATACCCCcctacgATGAAAAATTCAATTCCATTTGTGTCCATGTGTAAGAAGTGTATCATCCCCAAACCAGCCAGAACTCACCACTGTGGCATCTGCAACACGTGCATTTTGAAAATGGACCATCATTGTCCGTGGCTGAATAACTGTGTCGGCCATTTTAACCAGCGCTACTTCTTCTGCTTCTGTGTCTCCATGACCCTGGGCTGTGTCTACTGCAGCATCAGTGGCCGGAACCTTTTCCTGGATGCTTATAGTGCTTATAGTGCTATAGAGCGCttcaaacacatggacaaatcaGGTGTACCGGTGACAGGGAAGGGGCAACTCATAGGCATCTTACCTCCTGTGCagAGCACCTACCAGACTCCTCCCTTAACGTTCAGAGACGAGATGTTCCACAAGAGTGTCATTTACATGTGGGTGTTAACCAGCGTGGTGGCTGTATCTCTTGGGGGGCTGACTATCTGGCACGCAGTGCTGATATCCCGAGGAGAGACCAGCATAGAGAGGCACCTCAACAACAAGGAGACCAAACGGATGCGGAAATGTGGCAAGGTGTACAAGAACTCATTTAACTATGGCAGACTGAACAACTGGAAAGTCTTCTTAGGTGTGGAGAAGAAAAGtcaTTGGCTGACGCGAGTCATCCTGCCCTCTGGACATGTCCCCATTGGGAACGGCCTGACCTGGGACATCTATCCATTCAGAAAAGACATGATGCCCGTCTGAGCCAAATACAAAATAACTGAATTGAGACTTCTACAAAATGAGGAAACACCTGATGTCTGTCTGATCACTGACCCCACAGACTCTGTCCACACAGAACTACATCTCCCAGCGGCCCCTGTACCCTACATATACTGATGTCACATGACCAGGTTTTGGAGACGAGCAGGAGAGTGAATACTGGGAGGACAACAGGGAAGAGATGGGGAACGTTTGCTGCTCCTAAGTGAAACAACCCTACAAAATGTTTCAACCCTGGTCCTGGCACAGGGCTTGTGTAATAAAGGCCAACCACACTCCA
>XM_021606664.2
TCATTTTCAGCACTGAGTCTGTAACGTAGAGGAGAAGCGTCTGGGCTAAACTCGCGACAGAGAACATTGTCTCCGTTCAATTGTTAGCTTCCGGATGAATTAAACCTTCTTCACCTTGGTATCATGGCCAGAGATAACACATTTCTCACGGGTGACATGCGATCCTAAGAAAgagaaGAATGCGGCTGTGCCCCACCTTCCTGCTGCAGCGCTggctgtggttgtgtgtgtgcgccagACAGTGGCACTGCAGAAATGGCAACAACTGCAGACTACCGCTGTGTGTGAGGCAGATATGGGCCTACCTCAGACTGATGGTCGACTCCCTCTATTACAACACCCTCACCAACTCTGATGTCGTCATGGACTCACTGATGGAACCCATCTTATGGATGGTGGACCTACTCACCCGCAGGTTCGGGgcggtgTTTGTATGTCTGTTAGTGATACTGACCACTTCTATTCTGCTGGTAGTCTATGTGGTTATGCTGCCCGTGATCTTCGACACGTACTCTCCATCCTGGATAGCCTGGCACATGAGTTACGGACACTGGAACCTTGTCATGATCGTCTTCCACTATTATAAAGCTACCAATACTGCCCCAGGATACCCCcctacgATGAAAAATTCAATTCCATTTGTGTCCATGTGTAAGAAGTGTATCATCCCCAAACCAGCCAGAACTCACCACTGTGGCATCTGCAACACGTGCATTTTGAAAATGGACCATCATTGTCCGTGGCTGAATAACTGTGTCGGCCATTTTAACCAGCGCTACTTCTTCTGCTTCTGTGTCTCCATGACCCTGGGCTGTGTCTACTGCAGCATCAGTGGCCGGAACCTTTTCCTGGATGCTTATAGTGCTTATAGTGCTATAGAGAGCACCTACCAGACTCCTCCCTTAACGTTCAGAGACGAGATGTTCCACAAGAGTGTCATTTACATGTGGGTGTTAACCAGCGTGGTGGCTGTATCTCTTGGGGGGCTGACTATCTGGCACGCAGTGCTGATATCCCGAGGAGAGACCAGCATAGAGAGGCACCTCAACAACAAGGAGACCAAACGGATGCGGAAATGTGGCAAGGTGTACAAGAACTCATTTAACTATGGCAGACTGAACAACTGGAAAGTCTTCTTAGGTGTGGAGAAGAAAAGtcaTTGGCTGACGCGAGTCATCCTGCCCTCTGGACATGTCCCCATTGGGAACGGCCTGACCTGGGACATCTATCCATTCAGAAAAGACATGATGCCCGTCTGAGCCAAATACAAAATAACTGAATTGAGACTTCTACAAAATGAGGAAACACCTGATGTCTGTCTGATCACTGACCCCACAGACTCTGTCCACACAGAACTACATCTCCCAGCGGCCCCTGTACCCTACATATACTGATGTCACATGACCAGGTTTTGGAGACGAGCAGGAGAGTGAATACTGGGAGGACAACAGGGAAGAGATGGGGAACGTTTGCTGCTCCTAAGTGAAACAACCCTACAAAATGTTTCAACCCTGGTCCTGGCACAGGGCTTGTGTAATAAAGGCCAACCACACTCCA
>XM_036981491.1
TCATTTTCAGCACTGAGTCTGTAACGTAGAGGAGAAGCGTCTGGGCTAAACTCGCGACAGAGAACATTGTCTCCGTTCAATTGTTAGCTTCCGGATGAATTAAACCTTCTTCACCTTGGTATCATGGCCAGAGATAACACATTTCTCACGGGTGACATGCGATCCTAAGAAAgagaaGAATGCGGCTGTGCCCCACCTTCCTGCTGCAGCGCTggctgtggttgtgtgtgtgcgccagACAGTGGCACTGCAGAAATGGCAACAACTGCAGACTACCGCTGTGTGTGAGGCAGATATGGGCCTACCTCAGACTGATGGTCGACTCCCTCTATTACAACACCCTCACCAACTCTGATGTCGTCATGGACTCACTGATGGAACCCATCTTATGGATGGTGGACCTACTCACCCGCAGGTTCGGGgcggtgTTTGTATGTCTGTTAGTGATACTGACCACTTCTATTCTGCTGGTAGTCTATGTGGTTATGCTGCCCGTGATCTTCGACACGTACTCTCCATCCTGGATAGCCTGGCACATGAGTTACGGACACTGGAACCTTGTCATGATCGTCTTCCACTATTATAAAGCTACCAATACTGCCCCAGGATACCCCcctacgATGAAAAATTCAATTCCATTTGTGTCCATGTGTAAGAAGTGTATCATCCCCAAACCAGCCAGAACTCACCACTGTGGCATCTGCAACACGTGCATTTTGAAAATGGACCATCATTGTCCGTGGCTGAATAACTGTGTCGGCCATTTTAACCAGCGCTACTTCTTCTGCTTCTGTGTCTCCATGACCCTGGGCTGTGTCTACTGCAGCATCAGTGGCCGGAACCTTTTCCTGGATGCTTATAGTGCTTATAGTGCTATAGAGCGCttcaaacacatggacaaatcaGGTGTACCGGTGACAGGGAAGGGGCAACTCATAGGCATCTTACCTCCTGTGCagAGCACCTACCAGACTCCTCCCTTAACGTTCAGAGACGAGATGTTCCACAAGAGTGTCATTTACATGTGGGTGTTAACCAGCGTGGTGGCTGTATCTCTTGGGGGGCTGACTATCTGGCACGCAGTGCTGATATCCCGAGGAGAGACCAGCATAGAGAGGCACCTCAACAACAAGGAGACCAAACGGATGCGGAAATGTGGCAAGGTGTACAAGAACTCATTTAACTATGGCAGACTGAACAACTGGAAAGTCTTCTTAGGTGTGGAGAAGAAAAGtcaTTGGCTGACGCGAGTCATCCTGCCCTCTGGACATGTCCCCATTGGGAACGGCCTGACCTGGGACATCTATCCATTCAGAAAAGACATGATGCCCGTCTGAGCCAAATACAAAATAACTGAATTGAGACTTCTACAAAATGAGGAAACACCTGATGTCTGTCTGATCACTGACCCCACAGACTCTGTCCACACAGAACTACATCTCCCAGCGGCCCCTGTACCCTACATATACTGATGTCACATGACCAGGTTTTGGAGACGAGCAGGAGAGTGAATACTGGGAGGACAACAGGGAAGAGATGGGGAACGTTTGCTGCTCCTAAGTGAAACAACCCTACAAAATGTTTCAACCCTGGTCCTGGCACAGGGCTTGTGTAATAAAGGCCAACCACACTCCA

Function

symbol description
zdhhc16 Enables palmitoyltransferase activity. Involved in protein palmitoylation. Predicted to be located in endoplasmic reticulum membrane. Predicted to be integral component of membrane. Predicted to be active in Golgi apparatus.

NR:

description
probable palmitoyltransferase ZDHHC16

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016021 integral component of membrane cellular_component
GO:0016746 transferase activity, transferring acyl groups molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K18932 ZDHHC; palmitoyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036981500.1 False 1914 mRNA 0.49 11 60301493 60370189
XM_021606664.2 False 1557 mRNA 0.49 10 60349392 60370189
XM_036981491.1 True 1635 mRNA 0.49 11 60349392 60370189

Neighbor

gene id symbol gene type direction distance location
LOC110526041 LOC106576856 coding upstream 37284 60229471 ~ 60264209 (+)
LOC110526033 LOC106576855 coding upstream 82821 60183215 ~ 60218672 (+)
LOC118966766 NA coding upstream 84231 60217121 ~ 60217262 (+)
LOC110525930 LOC106576864 coding upstream 282798 59999410 ~ 60018695 (+)
si:ch211-223a10.1 LOC106576865 coding upstream 307842 59969512 ~ 59993651 (+)
LOC110521558 LOC106576852 coding downstream 3863 60374052 ~ 60391626 (+)
rrp12 rrp12 coding downstream 32892 60403081 ~ 60427711 (+)
prdm8 LOC106576848 coding downstream 126781 60496970 ~ 60501618 (+)
LOC110526122 LOC106576844 coding downstream 747061 61117250 ~ 61227125 (+)
LOC110526134 NA coding downstream 759917 61091580 ~ 61132005 (+)
G66310 NA non-coding upstream 121244 60179896 ~ 60180249 (+)
G66308 NA non-coding upstream 125186 60175978 ~ 60176307 (+)
G66269 LOC106576859 non-coding upstream 160284 60130319 ~ 60141209 (+)
G66225 NA non-coding upstream 210463 60027237 ~ 60091030 (+)
G66214 NA non-coding upstream 280792 60020477 ~ 60020701 (+)
G66435 NA non-coding downstream 124544 60494733 ~ 60495095 (+)
G66475 NA non-coding downstream 135393 60505582 ~ 60505809 (+)
G66480 NA non-coding downstream 141481 60511670 ~ 60512034 (+)
G66487 NA non-coding downstream 154050 60524239 ~ 60559757 (+)
G67445 NA non-coding downstream 638340 61008529 ~ 61008729 (+)
G66188 NA other upstream 359429 59941486 ~ 59942064 (+)
G65442 NA other upstream 976364 59324636 ~ 59325129 (+)
G64338 NA other upstream 1601114 58699296 ~ 58700379 (+)
G64315 NA other upstream 1635587 58665334 ~ 58665906 (+)
G64292 NA other upstream 1713908 58586858 ~ 58587585 (+)
G67806 LOC106581772 other downstream 944685 61314874 ~ 61315252 (+)
G67930 mcmbp other downstream 1359576 61729765 ~ 61733388 (+)
G70011 NA other downstream 2904774 63274963 ~ 63275296 (+)
LOC110526969 stk32c other downstream 4439400 64809255 ~ 64946164 (+)
LOC110527164 LOC106576754 other downstream 5545546 65915581 ~ 65922285 (+)

Expression


Co-expression Network