LOC110521558 (LOC106576852)


Basic Information

Item Value
gene id LOC110521558
gene name LOC106576852
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 60374052 ~ 60391626 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021599218.2
TACTTTGTTTTCATTGGCTCCATTCGCTGGTAGAAGTCTCTGAAAGGCTGTTTTCTCTGATGCTGAGTCGGTGTCGTGTTTGATTTAAACAACAAGTCTCCAGAACTAAGAGATCAAGTctctgggagagagaaagagaagaacatGGGAGTCGCTAACTCCAGGGATCACCATCTCTACCACCCCTCACAGTCTCCCATCAAGGTGGTGCTGAAAAGACGCAACGAGCCACTGAAGAAGGAGcgtcttaaatggaagaatgaGTACCCTATGACGGAGGGCCAGCTGAGGTGTAAGAGGGATGAGTTTTGGGACACGGCCCCAGCCTTTGACGGCAGGAAGGAGATTTGGGATGCGCTCCGAGCTGCAGCGGTGGCCGTAGAGCTTAACGACCTGGAAATGGCTCAGGCCATAGTGGACGGAGCCTGCATCACACTACCACATGGTACTCTGACAGAGAGTTATGATGAACTGGGGAACCGCTACCAGCTTCCTGCTTACACTCTAGCCCCTCCCGCCAATCTCATCACTGAACGCACCAATGACAGCGAAGCTCCCGATCAAAAGGAGCCGAAAAAGCCTCCCGCCTTTCCCAAAGAGGAGTTCCAGCTACAAGTTCGACTCTCGTGCGGTAAGGACCTCCGTATAAGCGCCTCCATGTCAGACACCATCTCCCAGCTGAAGACAGTCCTGGAGGGGCAGGAGGACATCGAAGTGGCCCACCAACGCTGGTTCTTTGCCGGTAAACTGCTCACAGACAAGATCCGACTCCAGGACACCAAGATACAGAAAGACTTTGTGGTCCAGGTCATCGTCAACAACTACTTACCAGTTACCAAACTCATGCCAAACTGAGGAGAAATGGAGAAAGATGGATGGGAGAGCAGGAGGAAAGGATTGAGATgaaagggggacagggagaggggtggcgAAAAACTGGGATGGAGTGCAGGCAGAAAAGGATGGGAGAATGTTGGTCAACGCCTTATTTCTCTCCTTTGGAAGTTCAAGCACACCAGGGTCATGATCGTTAGTGCACACCGTAGGAAAACgtaacaaaacattttgcaacatttCTCATTGGTCATGTTCAGATGGTCCGAAATGTGGAAAGACTTTTCTTTCATTTCGTGCCTAGTGAATAGGACACTGGACGGTTGCTGCAATGGAATGTTGGTTGCTGCAACAGAATGTTGTAATTAGTTTGTTTGCTTTTGTATTTCTTATCCTCTTTTTGTATTTTCCTAATAAGCCCACATTGTTACTgagtaaaaataaacaaattctGCATAGCCTGGCAAAGCACTGACAAACTGTATAATGAACGGGAAGAGAATCATGGCATATGGAGAAGAGATATTTCTCCCatgagtctgtctgtctacaaATCATTCCTTGTGAGTTTGTCCTTGTGGAACTTTGAACTGTGGAAAGTGTCCTGCCTGATGGTACAAATATTCTATTGGATCTCTATCTGTACTGAAAGCCAATCGATTTGTACCCTATCGATTGTCTAATCTTTACCTAATGGGAGAGAAGAATATTGACAGATTTATGAACGAAAGTGTATGTACTGTTTCAATACTTGTTGGATCATCATATACAAATATTTGTATATGTTTAACAAACCCCAAATAAATTTTACGTGACAAGGTTCATGAAAAGTCAACGATTTGAGGAAAAAGTGAATATACCGGTTTATAAAGGTGAAAATAGCAGATTTGATTTCCATCTACTGTATTTTTCGAACCAATTATGGAGAAAA

Function

NR:

description
PREDICTED: ubiquitin domain-containing protein 1-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021599218.2 True 1765 mRNA 0.45 4 60374052 60391626

Neighbor

gene id symbol gene type direction distance location
LOC110526060 zdhhc16 coding upstream 3863 60301493 ~ 60370189 (+)
LOC110526075 NA coding upstream 65811 60305769 ~ 60308241 (+)
LOC110526041 LOC106576856 coding upstream 109843 60229471 ~ 60264209 (+)
LOC110526033 LOC106576855 coding upstream 155380 60183215 ~ 60218672 (+)
LOC118966766 NA coding upstream 156790 60217121 ~ 60217262 (+)
rrp12 rrp12 coding downstream 11455 60403081 ~ 60427711 (+)
prdm8 LOC106576848 coding downstream 105344 60496970 ~ 60501618 (+)
LOC110526122 LOC106576844 coding downstream 725624 61117250 ~ 61227125 (+)
LOC110526134 NA coding downstream 738480 61091580 ~ 61132005 (+)
lrrfip2 lrrfip2 coding downstream 950479 61342105 ~ 61401807 (+)
G66375 NA non-coding upstream 53219 60320593 ~ 60320833 (+)
G66372 NA non-coding upstream 57516 60316305 ~ 60316536 (+)
G66370 NA non-coding upstream 61887 60311506 ~ 60312165 (+)
G66310 NA non-coding upstream 193803 60179896 ~ 60180249 (+)
G66308 NA non-coding upstream 197745 60175978 ~ 60176307 (+)
G66435 NA non-coding downstream 103107 60494733 ~ 60495095 (+)
G66475 NA non-coding downstream 113956 60505582 ~ 60505809 (+)
G66480 NA non-coding downstream 120044 60511670 ~ 60512034 (+)
G66487 NA non-coding downstream 132613 60524239 ~ 60559757 (+)
G67445 NA non-coding downstream 616903 61008529 ~ 61008729 (+)
G66188 NA other upstream 431988 59941486 ~ 59942064 (+)
G65442 NA other upstream 1048923 59324636 ~ 59325129 (+)
G64338 NA other upstream 1673673 58699296 ~ 58700379 (+)
G64315 NA other upstream 1708146 58665334 ~ 58665906 (+)
G64292 NA other upstream 1786467 58586858 ~ 58587585 (+)
G67806 LOC106581772 other downstream 923248 61314874 ~ 61315252 (+)
G67930 mcmbp other downstream 1338139 61729765 ~ 61733388 (+)
G70011 NA other downstream 2883337 63274963 ~ 63275296 (+)
LOC110526969 stk32c other downstream 4417963 64809255 ~ 64946164 (+)
LOC110527164 LOC106576754 other downstream 5524109 65915581 ~ 65922285 (+)

Expression


Co-expression Network