rrp12 (rrp12)


Basic Information

Item Value
gene id rrp12
gene name rrp12
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 60403081 ~ 60427711 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021606709.2
aagaattggGCGAACGCATCCCCGCAACGTCATCAGGAGAGCGACAGAGCTACTTGCGACAAATGCTTTGCTGAGCCAGAGTGGTTTGTATTATTTGAAAATATGGTGAAATCTGGAAAATTAAAATCTGGGACCGCATCAAAACTGAAGCGATGGAAAAAGGGACACAGCAGCGACTCGAACCCCCAGACGAGCCGATTCAGACAGGCTGCCAAAAGCCGTTTCTTCAGCCGCCCCTCGGaGAAGAGTGACCTGACAGTTGATGCACTCAAGCTGCACAACGAGCTGCAGGCAGGAACCCTGGAGAGGGGTGCGGGTGACCGGGGAGATGCCTGTATGGAGGAGACGGCAGAGCAGGCCCTTTCAGAGAGGAGCGCAGGGACCTTCCTCAGCGGGTTGTCGGACTGCTCTAACCTCACCTTCAGAAAGGTGCAGCGCTTCTGGGAGTCCAACTCAGCTGCCCATAAAGAGATATGTGCAGTGCTGGCTGCGGTGACTGAGGTGATTCGATctcagggagggaaggagacggAAACAGAGTACTTTGCAGCTCTGATGACCACCCTGGAGGCAGTGGATTCAGGGGAGTCTCTGGCTGCTGTAGCCTACCTCCTCAACCTGGTTATGAAACGGGTTCCAGCACCAGTGTTGATTTGTAAGTTCTCTGACACGGCCAAAGCTCTGATGGACGTCATGTCCACCCTGGCCAGCTCAGAGTCCGCCTCCGCACTCagatggATCCTGTCGTGCCTCTCCACTCTTTTGCGGAAGCAGGATGTTACAGTGTGGAGTTACCCGTCTACTCTGCAGACATACCACGGTCTACTCAGCTTCACTGTCCACAGCAAGCCCAAGATCCGTAAAGCAGCGCAGCACGGTGTGTGTTCCATCCTGAGAGGCAGTGACTTACTGTTTACAGACAACGCCCCGACCCACCACCCTGCTGCCGCGATGGCCGCCAAGTTCTGCATCAAAGAGATTGAACAGGCAGGAGgCAGTAAGGAGGACACCACCACCCTGCACGTCCTGGGTCTCCTGAAGGACCTCATGGTCACCTTCCCTCTCAATGCCGTCAAGTCCTGCTGTGAGACTCTGCTCAGGGTGATGACCCTCAGCCACGTGttGGTGACAGCATGTGCCATGCAGGCCTTCCATAAGCTGTTCAGTGGGAAACCCAACCCTGTTACCCTGTCTGCTGAACTCAATGCTCAGATCATCACGGCCCTGTATGACTACCTGCCCAGTGAGAATGACTTGCAGCCTCTACTAGCCTGGCTGGCTGTCATGGAGAAAGCCCACGTTCACCTGGCCGGtgttcAGTCATCTCTAAGTCTGGGTCATCTCCCTCGTCTCTTCTCCACAGCCATGTCCTGCCTCCTGTCACCTCACCCACAAGTCGTCTCTGCTGCCACCAATACACTCAAGACTTTGCTGTCGGAGTGTGTGGCTCCTCGCATGGAGGAGATCGGCCCCGTCAGCCCCACCGCTTCCTCTGGAAACCCTTCCTACGTCTGCAAGATGTTCCGtatcgTGGAGGAGGGTCTGTCGTATCGTTTCCACGCCTCCTGGCCGTTTGTTCTGCAGTTGCTGGGCTGTTTCTACAGAGCAgcagggaaacacacacacccggTCATGACCAAGtctctccagtctctagcGGACCTGCGCTCCACCCCCCGGTTCCCGTTCTGTGGTGAGCTGGACCTGGCTGTAGGTGGCGCTGTAGAGAGCATGGGACCTGAAGTACTGCTGACCGCTGTACCGCTCAACATCACTGGACTGGAagACAATCTGGAGTTCCCTCGTAGTTGGTTGATCCCTGTCATACGGGATCACGTTAAGAACACGCAACTGGCTTACTACACATCATATCTCCTGCCGCTCGCTGCCACGCTCCGACAGAGAGCTGAGGAGCTGGAGAAGGCTGGACAGAAACTGGAGGCTAAAGTCTACAAGACACTCCAGCTGCAGATCTGGACCATGCTGCCAGGGTTCTGTGTGGGGCCCTTGGACCTGCTGGTGTCGTTTAAAGGTGTAGCAAGGGCACTGGGCATGGCCATCAACGAACGGCCTGACCTACGACTGACCATCTGCCAGGCCATACGCACACTCATCACCAAGAGCTGTAACACCGAAGAGGAGAAGGCGGAGGTGGGGCGTTTTGCTAAGAACTTCCTGCCCATCCTGTTCAACGTGTTCAGCCAGCAGCCTGCTCCTGGAGACATTGCCCCCTACAGGATGGCTGTCCTAGACACCATTAAAGTCTACCTGACTGTCACAGACCCACAGATGGTGTGTACCTTCCTATCGAAAGCTACAGAAAGACTCAGCAGCCCAGACAGCACTGAGTTCATACGGTTGTCTGTCATGGACCTGATGGTTGCCATGGCACCCTGTGTAGATGAGGTCACAATGAGTCAGACCTTTGAGCTGATTAGGCCATACCTGGAGAAtaaggagccacacatgcagAAGAAGGCATACCGCGTATTGGAGGAGATGTgcggtggagagagggaggagtgtagATCTTTCGTTCTCTCTCACCTAGAGACGCTCAAACACGTTCTGCTGGGGACACTGAAGAATGCTTCATCTCCCGCCAAGAGGCCCAGACTAAAGTGTCTTATCCACATTGTGAAACAGCTTAGTGATGAACACAGAGACTTCATCACTGCCCTGCTACCagagGTGATCATATGTACTAAGGAGGTGTCAGTGGGAGCTCGTAAAAGCGCCTACACTCTACTGGTGGAGATAGGAAACGCTTTTATCAGGTTCTGTGGAGATGCCAAAGAAGCCTTGGAGCAGTACCTACTGTTGGTCTACGTGGGGCTGACCGGCTCGGTCACGATGATCACATGTACAGTCCTGGCTCTCACCAGACTGGTCTTTGAGTACAAAGacTCTATAGACATGGGATCGATGGAGCACCTCCTACACAACGTGTGCCTGCTGCTGACGTCTCGGACCAGGGAGATTGTGAAAGCAGCGCTCAGCTTTGTCAAGGTCATCCTCTTCGTCATGGATCCCAAGACACTGGCTGGACACGTCACTGTGATGatggaggGTGTTGGGAACATCAAGGATGACGTTAGAAGACACTTCAGGACGAAACTGAAAAACATTTTCACCAAGTTCATCAGGAAGTTTGGGTTTGAGTTGGTGAAAAGCAAGCTGCCTGTGGAGCATCATAAGGTGTTGGTGAACATCCGTAAGGCTGAGGCCAGAACCAAGAGATCGAGACTGGCGGACGAAGACCACGACGACTCAGACAGCGGGGACGACAAGCCAAAAGCCCGGGGAGCGAGtATTGAGGAGATCTTGGCCGAGTCGGACTCTGATATGTCAGATGACGAAAGGCCTAAGGGCGCTAAGACCCAGAAGAAGCCCACAAAGCAGAAGGGGCGGGCCTGGCTGAAGGAGGGACAAGGAGACGAACCACTCAACTTCCTGGATCCCACTGTCTCCCAGAGGGTCTTGGccacCAACCCAGACATGAAGAAGAGGGCAAAAGTTCAGCACAACTTCAAGGTCACGTCAGACGGAAGACTCATCATCAAAGAGGACAATGACGAGGGAGACAAGACTAAAGATgatgagggagagatgaaagACATTCTGGAGGAGGCTGGAGTCAAGAGTataAAGACTAAGAGGAGGACATTCCGGGATGGTCACTACGATGATGACATGGAGATTGAACCCCAGCTGAAATACAAAGCTGGAGGCTCGGGGATCCACAGACCTCTGGGTGGGAGCAGAGACCTGGGGGGAGACTACAAGGCCAAGAAGGGTAAAGGAGATGtgaagaggaaaggaaaggtTGATCCATATGCCTACATCCCTCTGAGGAAAGCACAGCTCAACCGCAGgaagAAAGCAAAGATGCAGGGCCAGTTTAAAGGCATGGTGAGAGGGGCCCAGAAGGGAGCGCAGTCTGGGAAGAGGATGCAAAGGAACAAGAGGAGGGCCTGAAAAGTTTACATCCCAATGGTTGAATGTGTGTCCTTCTGCCTGTTTTCCAAGAGGGTCTGTGCATAGAAATCTAATTAAAGCTAATTCTATGGGTCTGAGTCTATGCAGTTTATTGCTCAGGCATACCCCCCCTGAACAAGCAGTCCATGTATGTCTGCGAGAAACAGAATGGGAGAAGGAACGAGAAGAGGATTTGAAAAGGTCTTCAAATGGATCTGTAGATTTCTCTTTTGGGGGGTCTTGCCTAATTCCCATTGTTATCAATGGATACAATCAGGCATACACATGAAACTTTAGCTTTATAGGTGTGTTCAATTAAAATGTGTAAAGATGGATAAACatctgtttttaaatgtatttatgttcCCTACTTTAAAGGATGGGAAAAAAAATGTTGATGGTGTGAAAATTAAGAATGACTTGTTATTGCTCTgtttgaccactagatggtggtCTAGATTGCGGTTGAATATAAACAAGAGTTGGTTAAAATTCATATTCCAGCGCATGAAATTAGGATTACTGTTTGAATGTATTAAACTATTGATTCATCAGACTTAAA

Function

symbol description
rrp12 Predicted to be involved in rRNA processing. Predicted to be located in membrane and nucleus. Predicted to be integral component of membrane. Predicted to be active in nucleolus. Is expressed in several structures, including alar plate midbrain region; digestive system; intestinal bulb primordium; musculature system; and nervous system. Orthologous to human RRP12 (ribosomal RNA processing 12 homolog).

NR:

description
RRP12-like protein

GO: NA

KEGG:

id description
K14794 RRP12; ribosomal RNA-processing protein 12

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021606709.2 True 4540 mRNA 0.52 34 60403081 60427711

Neighbor

gene id symbol gene type direction distance location
LOC110521558 LOC106576852 coding upstream 11455 60374052 ~ 60391626 (+)
LOC110526060 zdhhc16 coding upstream 32892 60301493 ~ 60370189 (+)
LOC110526075 NA coding upstream 94840 60305769 ~ 60308241 (+)
LOC110526041 LOC106576856 coding upstream 138872 60229471 ~ 60264209 (+)
LOC110526033 LOC106576855 coding upstream 184409 60183215 ~ 60218672 (+)
prdm8 LOC106576848 coding downstream 69259 60496970 ~ 60501618 (+)
LOC110526122 LOC106576844 coding downstream 689539 61117250 ~ 61227125 (+)
LOC110526134 NA coding downstream 702395 61091580 ~ 61132005 (+)
lrrfip2 lrrfip2 coding downstream 914394 61342105 ~ 61401807 (+)
LOC110526206 fam83h coding downstream 1009896 61437607 ~ 61488427 (+)
G66375 NA non-coding upstream 82248 60320593 ~ 60320833 (+)
G66372 NA non-coding upstream 86545 60316305 ~ 60316536 (+)
G66370 NA non-coding upstream 90916 60311506 ~ 60312165 (+)
G66310 NA non-coding upstream 222832 60179896 ~ 60180249 (+)
G66308 NA non-coding upstream 226774 60175978 ~ 60176307 (+)
G66435 NA non-coding downstream 67022 60494733 ~ 60495095 (+)
G66475 NA non-coding downstream 77871 60505582 ~ 60505809 (+)
G66480 NA non-coding downstream 83959 60511670 ~ 60512034 (+)
G66487 NA non-coding downstream 96528 60524239 ~ 60559757 (+)
G67445 NA non-coding downstream 580818 61008529 ~ 61008729 (+)
G66188 NA other upstream 461017 59941486 ~ 59942064 (+)
G65442 NA other upstream 1077952 59324636 ~ 59325129 (+)
G64338 NA other upstream 1702702 58699296 ~ 58700379 (+)
G64315 NA other upstream 1737175 58665334 ~ 58665906 (+)
G64292 NA other upstream 1815496 58586858 ~ 58587585 (+)
G67806 LOC106581772 other downstream 887163 61314874 ~ 61315252 (+)
G67930 mcmbp other downstream 1302054 61729765 ~ 61733388 (+)
G70011 NA other downstream 2847252 63274963 ~ 63275296 (+)
LOC110526969 stk32c other downstream 4381878 64809255 ~ 64946164 (+)
LOC110527164 LOC106576754 other downstream 5488024 65915581 ~ 65922285 (+)

Expression


Co-expression Network